Legend: The document presents the genetic associations for metabolites and SCD-related diseases and mendelian randomization analysis results. SNPs (effect alleles) are the lead variants in each gene region identified for their strong association (P < 5.0 × 10−5) with a given metabolite in GWASes of metabolite levels in Europe-ancestry individuals (Shin et al., Nature Genetics, 2014, n=7,824; Long et al., Nature Genetics, 2017, n=1,960). Association effect size with SCD-related diseases in the CSSCD are log odds ratios from logistic regression.
Abbreviations and symbols: *:Variants identified to be pleiotropic by Phenoscanner queries and were excluded from model 2 (Methods); EAF: Effect allele frequency; BETA: Regression effect size or log(odd ratio); P Value: Significance value; N:GWAS sample size; F = F-statistic; I2 = I square; Q=Cochrane Q; nSNP=number of SNPs; CI=confidence interval; Var_ex=variance explained; IVW(re)= Inverse variance weighted (multiplicative random effect).
Association of Variant with… (EAF, Beta, P Value, N)
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SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Painful Crises (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, 0.59, P = 0.24, N = 1101) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.47, -0.12, P = 0.31, N = 1101) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.88, -0.12, P = 0.49, N = 1101) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.17, -0.021, P = 0.89, N = 1101) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.76, -0.052, P = 0.7, N = 1101) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.4, -0.018, P = 0.88, N = 1101) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.01, 0.16, P = 0.78, N = 1101) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.12, -0.12, P = 0.5, N = 1101) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, 0.29, P = 0.074, N = 1101) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.15, -0.061, P = 0.71, N = 1101) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.035, 0.24, P = 0.45, N = 1101) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, -0.11, P = 0.42, N = 1101) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.045, 0.093, P = 0.74, N = 1101) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, -0.026, P = 0.88, N = 1101) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.94, 0.25, P = 0.32, N = 1101) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.14, -0.32, P = 0.049, N = 1101) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.27, 0.013, P = 0.92, N = 1101) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.044, 0.25, P = 0.4, N = 1101) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.13, -0.0023, P = 0.99, N = 1101) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.64, 0.11, P = 0.36, N = 1101) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.3, 0.037, P = 0.77, N = 1101) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.18, -0.12, P = 0.43, N = 1101) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.77, -0.11, P = 0.43, N = 1101) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.042, 0.057, P = 0.85, N = 1101) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.72, -0.17, P = 0.17, N = 1101) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.19, 0.031, P = 0.84, N = 1101) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.87, -0.17, P = 0.33, N = 1101) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.025, 0.15, P = 0.69, N = 1101) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, 0.15, P = 0.37, N = 1101) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.22, -0.11, P = 0.45, N = 1101) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.47, -0.0083, P = 0.94, N = 1101) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.23, -0.32, P = 0.023, N = 1101) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.56, -0.12, P = 0.31, N = 1101) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.75, 0.056, P = 0.67, N = 1101) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.079, -0.18, P = 0.42, N = 1101) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, 0.082, P = 0.71, N = 1101) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.09, 0.24, P = 0.25, N = 1101) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.17, -0.031, P = 0.84, N = 1101) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.54, -0.064, P = 0.59, N = 1101) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.51, 0.052, P = 0.66, N = 1101) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.095, 0.42, P = 0.04, N = 1101) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.34, -0.091, P = 0.45, N = 1101) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.49, 0.092, P = 0.42, N = 1101) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.82, -0.16, P = 0.29, N = 1101) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.76, -0.14, P = 0.3, N = 1101) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.71, -0.18, P = 0.17, N = 1101) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, -0.0076, P = 0.96, N = 1101) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, 0.037, P = 0.79, N = 1101) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.43, -0.073, P = 0.54, N = 1101) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.056, -0.11, P = 0.67, N = 1101) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.027, 0.68, P = 0.06, N = 1101) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | -0.21 (-0.46- 0.03) P=0.086 | 12 | 30 | 0.000128 (0- 62.6) | NA | NA | 0.016 P=0.56 |
MR-Egger | 51 | -0.27 (-0.61- 0.064) P=0.12 | 12 | 30 | 0.000128 (0- 62.6) | 41 | 0.8 | 0.016 P=0.56 |
Weighted median | 51 | -0.26 (-0.63- 0.11) P=0.17 | 12 | 30 | 0.000128 (0- 62.6) | NA | NA | 0.016 P=0.56 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.21 | 0.12 | -1.72 | 0.09 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
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---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | -0.38 (-0.65- -0.12) P=0.0048 | 16 | 22 | 0 (0- 58.4) | NA | NA | -0.021 P=0.58 |
MR-Egger | 27 | -0.31 (-0.73- 0.11) P=0.16 | 16 | 22 | 0 (0- 58.4) | 17 | 0.88 | -0.021 P=0.58 |
Weighted median | 27 | -0.32 (-0.71- 0.084) P=0.12 | 16 | 22 | 0 (0- 58.4) | NA | NA | -0.021 P=0.58 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.38 | 0.14 | -2.82 | 0.01 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Cholecystectomy (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, -0.66, P = 0.25, N = 1084) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.47, -0.08, P = 0.56, N = 1084) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.88, -0.07, P = 0.74, N = 1084) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.17, 0.26, P = 0.15, N = 1084) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.76, -0.098, P = 0.53, N = 1084) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.4, 0.042, P = 0.76, N = 1084) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.01, 0.34, P = 0.63, N = 1084) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.12, -0.52, P = 0.01, N = 1084) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, -0.4, P = 0.033, N = 1084) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.15, -0.0037, P = 0.98, N = 1084) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.035, 0.2, P = 0.57, N = 1084) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, 0.21, P = 0.2, N = 1084) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.044, -0.24, P = 0.48, N = 1084) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, 0.1, P = 0.61, N = 1084) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.94, -0.22, P = 0.46, N = 1084) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.14, 0.043, P = 0.82, N = 1084) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.27, -0.21, P = 0.18, N = 1084) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.044, -0.3, P = 0.37, N = 1084) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.13, 0.14, P = 0.5, N = 1084) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.64, 0.086, P = 0.55, N = 1084) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.3, 0.25, P = 0.086, N = 1084) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.18, -0.19, P = 0.27, N = 1084) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.76, 0.041, P = 0.79, N = 1084) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.042, -0.47, P = 0.16, N = 1084) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.73, -0.12, P = 0.4, N = 1084) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.19, -0.058, P = 0.75, N = 1084) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.87, -0.16, P = 0.42, N = 1084) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.025, 0.11, P = 0.8, N = 1084) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, 0.12, P = 0.53, N = 1084) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.22, -0.12, P = 0.48, N = 1084) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.47, 0.12, P = 0.37, N = 1084) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.23, -0.16, P = 0.33, N = 1084) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.56, -0.14, P = 0.29, N = 1084) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.75, 0.23, P = 0.13, N = 1084) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.078, 0.12, P = 0.65, N = 1084) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, -0.14, P = 0.59, N = 1084) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.09, -0.32, P = 0.2, N = 1084) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.18, 0.027, P = 0.88, N = 1084) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.54, 0.054, P = 0.69, N = 1084) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.51, -0.36, P = 0.0077, N = 1084) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.095, 0.46, P = 0.059, N = 1084) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.33, 0.092, P = 0.51, N = 1084) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.49, 0.0036, P = 0.98, N = 1084) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.82, -0.1, P = 0.54, N = 1084) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.76, -0.13, P = 0.39, N = 1084) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.71, 0.03, P = 0.84, N = 1084) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, 0.22, P = 0.19, N = 1084) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, -0.23, P = 0.16, N = 1084) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.43, -0.075, P = 0.58, N = 1084) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.056, -0.23, P = 0.44, N = 1084) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.026, -0.083, P = 0.85, N = 1084) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | -0.06 (-0.39- 0.27) P=0.72 | 12 | 30 | 0 (0- 98) | NA | NA | -0.051 P=0.13 |
MR-Egger | 51 | 0.13 (-0.27- 0.54) P=0.52 | 12 | 30 | 0 (0- 98) | 53 | 0.33 | -0.051 P=0.13 |
Weighted median | 51 | -0.097 (-0.54- 0.35) P=0.67 | 12 | 30 | 0 (0- 98) | NA | NA | -0.051 P=0.13 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.06 | 0.17 | -0.36 | 0.72 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | -0.17 (-0.56- 0.22) P=0.39 | 16 | 22 | 0 (0- 96.8) | NA | NA | -0.041 P=0.38 |
MR-Egger | 27 | -0.027 (-0.53- 0.48) P=0.92 | 16 | 22 | 0 (0- 96.8) | 27 | 0.36 | -0.041 P=0.38 |
Weighted median | 27 | -0.25 (-0.78- 0.28) P=0.36 | 16 | 22 | 0 (0- 96.8) | NA | NA | -0.041 P=0.38 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.17 | 0.2 | -0.87 | 0.39 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Retinopathy (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.98, 0.8, P = 0.1, N = 566) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.48, 0.096, P = 0.47, N = 566) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.88, 0.094, P = 0.63, N = 566) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.18, -0.17, P = 0.3, N = 566) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.76, -0.09, P = 0.54, N = 566) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.4, -0.13, P = 0.31, N = 566) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.011, 0.31, P = 0.63, N = 566) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.11, 0.41, P = 0.046, N = 566) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.17, 0.23, P = 0.19, N = 566) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.16, -0.24, P = 0.16, N = 566) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.037, -0.36, P = 0.28, N = 566) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.8, 0.081, P = 0.6, N = 566) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.039, 0.16, P = 0.63, N = 566) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, 0.16, P = 0.41, N = 566) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.95, 0.2, P = 0.48, N = 566) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.14, 0.088, P = 0.63, N = 566) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.27, -0.4, P = 0.0062, N = 566) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.042, -0.33, P = 0.31, N = 566) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.13, 0.36, P = 0.065, N = 566) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.63, 0.06, P = 0.66, N = 566) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.31, -0.2, P = 0.15, N = 566) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.19, 0.026, P = 0.87, N = 566) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.77, -0.2, P = 0.17, N = 566) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.04, -0.068, P = 0.84, N = 566) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.72, 0.028, P = 0.84, N = 566) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.18, 0.019, P = 0.91, N = 566) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.9, -0.11, P = 0.58, N = 566) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.027, 0.51, P = 0.2, N = 566) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, 0.12, P = 0.54, N = 566) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.21, -0.033, P = 0.83, N = 566) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.48, -0.076, P = 0.55, N = 566) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.24, 0.078, P = 0.6, N = 566) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.55, -0.049, P = 0.69, N = 566) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.73, -0.36, P = 0.012, N = 566) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.073, -0.12, P = 0.62, N = 566) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, -0.28, P = 0.24, N = 566) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.087, -0.38, P = 0.09, N = 566) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.17, 0.29, P = 0.081, N = 566) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.53, 0.074, P = 0.57, N = 566) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.5, -0.076, P = 0.54, N = 566) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.092, -0.36, P = 0.11, N = 566) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.33, -0.09, P = 0.51, N = 566) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.49, 0.14, P = 0.29, N = 566) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.81, -0.16, P = 0.34, N = 566) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.74, -0.035, P = 0.81, N = 566) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.72, 0.089, P = 0.53, N = 566) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, -0.096, P = 0.54, N = 566) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, 0.21, P = 0.16, N = 566) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.44, 0.15, P = 0.25, N = 566) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.057, -0.067, P = 0.8, N = 566) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.033, 0.43, P = 0.24, N = 566) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | -0.073 (-0.4- 0.25) P=0.66 | 12 | 30 | 4.6 (0- 97.4) | NA | NA | 0.022 P=0.5 |
MR-Egger | 51 | -0.16 (-0.57- 0.25) P=0.45 | 12 | 30 | 4.6 (0- 97.4) | 61 | 0.12 | 0.022 P=0.5 |
Weighted median | 51 | -0.2 (-0.66- 0.26) P=0.4 | 12 | 30 | 4.6 (0- 97.4) | NA | NA | 0.022 P=0.5 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.07 | 0.17 | -0.44 | 0.66 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | 0.15 (-0.25- 0.54) P=0.46 | 16 | 22 | 5.05 (0- 97.5) | NA | NA | 0.014 P=0.77 |
MR-Egger | 27 | 0.1 (-0.42- 0.62) P=0.71 | 16 | 22 | 5.05 (0- 97.5) | 32 | 0.16 | 0.014 P=0.77 |
Weighted median | 27 | 0.21 (-0.31- 0.72) P=0.43 | 16 | 22 | 5.05 (0- 97.5) | NA | NA | 0.014 P=0.77 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.15 | 0.2 | 0.74 | 0.46 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Priapism (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, -0.11, P = 0.88, N = 556) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.48, 0.13, P = 0.45, N = 556) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.89, 0.21, P = 0.44, N = 556) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.17, -0.014, P = 0.95, N = 556) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.77, -0.069, P = 0.72, N = 556) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.4, 0.098, P = 0.56, N = 556) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.013, 0.073, P = 0.93, N = 556) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.11, 0.031, P = 0.9, N = 556) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.15, -0.17, P = 0.46, N = 556) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.15, -0.19, P = 0.43, N = 556) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.031, -0.19, P = 0.68, N = 556) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, 0.065, P = 0.76, N = 556) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.044, 0.17, P = 0.69, N = 556) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, -0.27, P = 0.3, N = 556) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.95, 0.71, P = 0.072, N = 556) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.15, -0.052, P = 0.83, N = 556) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.26, -0.0017, P = 0.99, N = 556) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.042, -0.39, P = 0.35, N = 556) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.12, -0.18, P = 0.48, N = 556) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.64, 0.029, P = 0.87, N = 556) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.3, 0.035, P = 0.85, N = 556) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.18, 0.24, P = 0.27, N = 556) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.78, 0.034, P = 0.86, N = 556) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.048, -0.15, P = 0.7, N = 556) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.72, -0.12, P = 0.51, N = 556) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.2, 0.21, P = 0.33, N = 556) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.87, -0.19, P = 0.47, N = 556) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.018, 0.3, P = 0.63, N = 556) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, 0.3, P = 0.22, N = 556) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.21, 0.23, P = 0.24, N = 556) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.47, 0.1, P = 0.53, N = 556) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.23, 0.21, P = 0.32, N = 556) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.56, 0.031, P = 0.85, N = 556) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.74, -0.18, P = 0.34, N = 556) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.08, 0.13, P = 0.68, N = 556) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, 0.24, P = 0.45, N = 556) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.095, -0.08, P = 0.79, N = 556) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.18, -0.014, P = 0.95, N = 556) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.54, -0.13, P = 0.47, N = 556) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.51, 0.12, P = 0.46, N = 556) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.1, -0.18, P = 0.53, N = 556) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.33, -0.13, P = 0.47, N = 556) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.48, -0.17, P = 0.33, N = 556) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.81, -0.3, P = 0.16, N = 556) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.75, -0.12, P = 0.53, N = 556) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.71, -0.0019, P = 0.99, N = 556) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, 0.056, P = 0.79, N = 556) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.25, -0.19, P = 0.35, N = 556) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.43, 0.054, P = 0.75, N = 556) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.058, -0.11, P = 0.76, N = 556) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.029, 0.079, P = 0.87, N = 556) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | 0.034 (-0.24- 0.31) P=0.81 | 12 | 30 | 0 (0- 0) | NA | NA | -0.014 P=0.73 |
MR-Egger | 51 | 0.087 (-0.41- 0.58) P=0.73 | 12 | 30 | 0 (0- 0) | 25 | 1 | -0.014 P=0.73 |
Weighted median | 51 | 0.13 (-0.42- 0.67) P=0.65 | 12 | 30 | 0 (0- 0) | NA | NA | -0.014 P=0.73 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.03 | 0.14 | 0.24 | 0.81 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | 0.091 (-0.25- 0.43) P=0.6 | 16 | 22 | 0 (0- 0) | NA | NA | -0.029 P=0.6 |
MR-Egger | 27 | 0.19 (-0.41- 0.8) P=0.54 | 16 | 22 | 0 (0- 0) | 13 | 0.97 | -0.029 P=0.6 |
Weighted median | 27 | 0.21 (-0.45- 0.87) P=0.53 | 16 | 22 | 0 (0- 0) | NA | NA | -0.029 P=0.6 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.09 | 0.17 | 0.52 | 0.61 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Leg Ulcer (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, -0.91, P = 0.11, N = 1155) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.47, 0.095, P = 0.47, N = 1155) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.88, -0.088, P = 0.66, N = 1155) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.17, -0.36, P = 0.034, N = 1155) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.76, -0.22, P = 0.14, N = 1155) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.4, 0.098, P = 0.47, N = 1155) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.011, -0.62, P = 0.42, N = 1155) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.12, -0.02, P = 0.92, N = 1155) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, -0.16, P = 0.39, N = 1155) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.15, 0.019, P = 0.92, N = 1155) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.035, 0.33, P = 0.31, N = 1155) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, -0.0017, P = 0.99, N = 1155) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.044, 0.58, P = 0.071, N = 1155) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, 0.29, P = 0.13, N = 1155) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.94, -0.12, P = 0.69, N = 1155) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.14, -0.014, P = 0.94, N = 1155) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.28, -0.15, P = 0.31, N = 1155) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.045, 0.03, P = 0.93, N = 1155) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.13, 0.06, P = 0.77, N = 1155) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.64, -0.16, P = 0.24, N = 1155) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.3, -0.089, P = 0.53, N = 1155) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.18, 0.069, P = 0.68, N = 1155) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.77, -0.26, P = 0.075, N = 1155) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.042, -0.39, P = 0.23, N = 1155) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.72, 0.0027, P = 0.98, N = 1155) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.19, -0.024, P = 0.89, N = 1155) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.87, 0.17, P = 0.39, N = 1155) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.026, -0.53, P = 0.23, N = 1155) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, 0.23, P = 0.23, N = 1155) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.22, -0.091, P = 0.56, N = 1155) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.47, 0.18, P = 0.16, N = 1155) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.23, 0.0032, P = 0.98, N = 1155) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.56, 0.07, P = 0.58, N = 1155) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.75, 0.11, P = 0.46, N = 1155) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.077, 0.16, P = 0.53, N = 1155) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, -0.032, P = 0.9, N = 1155) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.089, -0.057, P = 0.81, N = 1155) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.17, -0.14, P = 0.4, N = 1155) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.54, 0.025, P = 0.85, N = 1155) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.51, 0.067, P = 0.61, N = 1155) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.098, 0.14, P = 0.56, N = 1155) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.34, 0.051, P = 0.7, N = 1155) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.49, -0.14, P = 0.28, N = 1155) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.82, -0.075, P = 0.64, N = 1155) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.76, -0.063, P = 0.66, N = 1155) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.72, 0.24, P = 0.1, N = 1155) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, 0.059, P = 0.71, N = 1155) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, -0.13, P = 0.4, N = 1155) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.43, -0.15, P = 0.25, N = 1155) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.056, 0.54, P = 0.064, N = 1155) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.026, 0.26, P = 0.53, N = 1155) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | 0.091 (-0.19- 0.38) P=0.53 | 12 | 30 | 0.332 (0- 49.2) | NA | NA | 0.0017 P=0.96 |
MR-Egger | 51 | 0.084 (-0.29- 0.46) P=0.66 | 12 | 30 | 0.332 (0- 49.2) | 45 | 0.64 | 0.0017 P=0.96 |
Weighted median | 51 | -0.034 (-0.47- 0.41) P=0.88 | 12 | 30 | 0.332 (0- 49.2) | NA | NA | 0.0017 P=0.96 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.09 | 0.15 | 0.62 | 0.54 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | 0.17 (-0.13- 0.48) P=0.26 | 16 | 22 | 0 (0- 28.3) | NA | NA | -0.0013 P=0.98 |
MR-Egger | 27 | 0.18 (-0.29- 0.65) P=0.46 | 16 | 22 | 0 (0- 28.3) | 18 | 0.83 | -0.0013 P=0.98 |
Weighted median | 27 | 0.091 (-0.41- 0.59) P=0.72 | 16 | 22 | 0 (0- 28.3) | NA | NA | -0.0013 P=0.98 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.17 | 0.16 | 1.12 | 0.27 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | eGFR (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, -0.12, P = 0.56, N = 859) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.47, -0.0057, P = 0.91, N = 859) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.88, -0.022, P = 0.77, N = 859) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.17, 0.093, P = 0.14, N = 859) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.76, 0.04, P = 0.47, N = 859) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.4, -0.021, P = 0.67, N = 859) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.011, -0.093, P = 0.69, N = 859) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.12, -0.13, P = 0.078, N = 859) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, -0.075, P = 0.25, N = 859) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.15, -0.057, P = 0.37, N = 859) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.037, -0.18, P = 0.15, N = 859) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, 0.093, P = 0.12, N = 859) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.042, 0.063, P = 0.6, N = 859) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, -0.075, P = 0.3, N = 859) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.95, 0.089, P = 0.4, N = 859) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.14, -0.0097, P = 0.89, N = 859) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.28, 0.021, P = 0.7, N = 859) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.041, -0.011, P = 0.93, N = 859) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.12, -0.014, P = 0.85, N = 859) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.64, -0.0076, P = 0.88, N = 859) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.3, -0.036, P = 0.5, N = 859) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.18, 0.15, P = 0.015, N = 859) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.76, 0.041, P = 0.46, N = 859) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.039, -0.056, P = 0.66, N = 859) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.72, -0.12, P = 0.019, N = 859) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.18, 0.034, P = 0.58, N = 859) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.87, -0.064, P = 0.37, N = 859) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.025, -0.1, P = 0.51, N = 859) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, -0.071, P = 0.3, N = 859) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.22, -0.027, P = 0.64, N = 859) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.47, 0.081, P = 0.085, N = 859) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.23, 0.0063, P = 0.91, N = 859) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.56, -0.0017, P = 0.97, N = 859) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.76, 0.09, P = 0.11, N = 859) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.075, 0.14, P = 0.12, N = 859) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, 0.031, P = 0.74, N = 859) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.088, 0.061, P = 0.48, N = 859) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.17, -0.065, P = 0.3, N = 859) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.54, 0.13, P = 0.012, N = 859) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.51, -0.035, P = 0.46, N = 859) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.095, 0.067, P = 0.42, N = 859) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.34, 0.021, P = 0.67, N = 859) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.5, -0.025, P = 0.6, N = 859) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.81, -0.02, P = 0.74, N = 859) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.75, -0.017, P = 0.76, N = 859) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.72, 0.016, P = 0.77, N = 859) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.21, -0.014, P = 0.82, N = 859) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, -0.0071, P = 0.9, N = 859) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.43, -0.065, P = 0.18, N = 859) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.053, 0.065, P = 0.54, N = 859) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.027, 0.057, P = 0.7, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | 0.027 (-0.085- 0.14) P=0.64 | 12 | 30 | 5.42 (0- 57.8) | NA | NA | -0.0089 P=0.44 |
MR-Egger | 51 | 0.061 (-0.08- 0.2) P=0.4 | 12 | 30 | 5.42 (0- 57.8) | 50 | 0.43 | -0.0089 P=0.44 |
Weighted median | 51 | 0.015 (-0.15- 0.18) P=0.85 | 12 | 30 | 5.42 (0- 57.8) | NA | NA | -0.0089 P=0.44 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.03 | 0.06 | 0.47 | 0.64 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | -0.026 (-0.18- 0.13) P=0.74 | 16 | 22 | 17 (0- 95.4) | NA | NA | -0.011 P=0.56 |
MR-Egger | 27 | 0.012 (-0.19- 0.21) P=0.91 | 16 | 22 | 17 (0- 95.4) | 33 | 0.12 | -0.011 P=0.56 |
Weighted median | 27 | -0.0049 (-0.2- 0.19) P=0.96 | 16 | 22 | 17 (0- 95.4) | NA | NA | -0.011 P=0.56 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.03 | 0.08 | -0.34 | 0.74 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Aseptic Necrosis (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, 0.37, P = 0.5, N = 1155) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.47, -0.098, P = 0.45, N = 1155) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.88, 0.17, P = 0.39, N = 1155) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.17, -0.19, P = 0.27, N = 1155) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.76, 0.096, P = 0.52, N = 1155) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.4, 0.053, P = 0.69, N = 1155) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.011, -0.51, P = 0.4, N = 1155) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.12, -0.011, P = 0.96, N = 1155) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, -0.12, P = 0.5, N = 1155) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.15, -0.057, P = 0.75, N = 1155) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.035, -0.29, P = 0.39, N = 1155) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, -0.011, P = 0.94, N = 1155) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.044, 0.14, P = 0.65, N = 1155) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, -0.28, P = 0.15, N = 1155) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.94, 0.12, P = 0.67, N = 1155) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.14, -0.3, P = 0.092, N = 1155) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.28, -0.41, P = 0.0053, N = 1155) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.045, -0.2, P = 0.53, N = 1155) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.13, 0.14, P = 0.49, N = 1155) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.64, -0.13, P = 0.32, N = 1155) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.3, -0.063, P = 0.65, N = 1155) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.18, -0.2, P = 0.23, N = 1155) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.77, -0.022, P = 0.88, N = 1155) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.042, -0.33, P = 0.31, N = 1155) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.72, -0.36, P = 0.0085, N = 1155) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.19, -0.077, P = 0.64, N = 1155) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.87, 0.049, P = 0.8, N = 1155) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.026, -0.65, P = 0.13, N = 1155) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, 0.06, P = 0.74, N = 1155) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.22, -0.067, P = 0.66, N = 1155) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.47, -0.14, P = 0.27, N = 1155) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.23, -0.21, P = 0.16, N = 1155) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.56, -0.074, P = 0.56, N = 1155) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.75, 0.15, P = 0.31, N = 1155) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.077, -0.12, P = 0.62, N = 1155) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, -0.23, P = 0.34, N = 1155) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.089, 0.19, P = 0.42, N = 1155) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.17, -0.25, P = 0.14, N = 1155) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.54, 0.0018, P = 0.99, N = 1155) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.51, -0.15, P = 0.23, N = 1155) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.098, 0.17, P = 0.47, N = 1155) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.34, -0.094, P = 0.48, N = 1155) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.49, 0.066, P = 0.6, N = 1155) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.82, -0.38, P = 0.023, N = 1155) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.76, 0.0033, P = 0.98, N = 1155) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.72, -0.042, P = 0.77, N = 1155) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, 0.16, P = 0.32, N = 1155) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, 0.11, P = 0.46, N = 1155) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.43, -0.099, P = 0.45, N = 1155) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.056, -0.098, P = 0.73, N = 1155) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.026, 0.91, P = 0.026, N = 1155) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | -0.12 (-0.44- 0.19) P=0.44 | 12 | 30 | 2.53 (0- 98.6) | NA | NA | -0.024 P=0.45 |
MR-Egger | 51 | -0.031 (-0.43- 0.37) P=0.88 | 12 | 30 | 2.53 (0- 98.6) | 55 | 0.25 | -0.024 P=0.45 |
Weighted median | 51 | -0.095 (-0.52- 0.33) P=0.67 | 12 | 30 | 2.53 (0- 98.6) | NA | NA | -0.024 P=0.45 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.12 | 0.16 | -0.77 | 0.45 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | -0.16 (-0.5- 0.19) P=0.37 | 16 | 22 | 3.47 (0- 65.3) | NA | NA | -0.048 P=0.26 |
MR-Egger | 27 | 0.012 (-0.45- 0.47) P=0.96 | 16 | 22 | 3.47 (0- 65.3) | 22 | 0.61 | -0.048 P=0.26 |
Weighted median | 27 | -0.24 (-0.78- 0.29) P=0.37 | 16 | 22 | 3.47 (0- 65.3) | NA | NA | -0.048 P=0.26 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.16 | 0.18 | -0.9 | 0.38 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Painful Crises (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, 0.073, P = 0.92, N = 387) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.47, -0.32, P = 0.061, N = 387) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.89, 0.032, P = 0.9, N = 387) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.16, -0.025, P = 0.91, N = 387) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.75, 0.03, P = 0.88, N = 387) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.38, -0.14, P = 0.42, N = 387) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.01, -0.14, P = 0.87, N = 387) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.13, 0.31, P = 0.22, N = 387) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, 0.37, P = 0.13, N = 387) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.16, -0.34, P = 0.15, N = 387) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.047, 0.23, P = 0.55, N = 387) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, -0.24, P = 0.26, N = 387) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.041, 0.67, P = 0.12, N = 387) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, -0.18, P = 0.49, N = 387) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.95, 0.27, P = 0.49, N = 387) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.16, -0.34, P = 0.14, N = 387) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.26, -0.03, P = 0.88, N = 387) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.039, 0.82, P = 0.066, N = 387) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.11, -0.021, P = 0.94, N = 387) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.63, 0.066, P = 0.72, N = 387) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.32, 0.0033, P = 0.99, N = 387) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.17, -0.055, P = 0.8, N = 387) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.76, -0.11, P = 0.57, N = 387) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.039, -0.064, P = 0.89, N = 387) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.73, -0.36, P = 0.053, N = 387) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.18, 0.083, P = 0.71, N = 387) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.89, -0.17, P = 0.51, N = 387) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.018, 0.016, P = 0.98, N = 387) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, -0.12, P = 0.61, N = 387) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.21, 0.081, P = 0.7, N = 387) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.46, 0.0034, P = 0.98, N = 387) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.22, -0.34, P = 0.098, N = 387) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.52, -0.12, P = 0.47, N = 387) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.73, -0.16, P = 0.39, N = 387) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.074, -0.21, P = 0.52, N = 387) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, 0.14, P = 0.65, N = 387) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.087, 0.47, P = 0.12, N = 387) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.18, 0.16, P = 0.46, N = 387) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.52, -0.24, P = 0.16, N = 387) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.51, 0.17, P = 0.32, N = 387) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.078, 0.5, P = 0.13, N = 387) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.32, 0.19, P = 0.27, N = 387) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.5, 0.18, P = 0.28, N = 387) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.8, -0.3, P = 0.15, N = 387) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.75, -0.0072, P = 0.97, N = 387) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.73, -0.3, P = 0.11, N = 387) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, -0.045, P = 0.83, N = 387) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, 0.058, P = 0.77, N = 387) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.45, -0.19, P = 0.26, N = 387) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.049, 0.23, P = 0.55, N = 387) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.026, -0.35, P = 0.52, N = 387) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | -0.26 (-0.64- 0.12) P=0.18 | 12 | 30 | 7.65 (0- 50.6) | NA | NA | 0.017 P=0.68 |
MR-Egger | 51 | -0.33 (-0.83- 0.17) P=0.2 | 12 | 30 | 7.65 (0- 50.6) | 46 | 0.6 | 0.017 P=0.68 |
Weighted median | 51 | -0.25 (-0.86- 0.35) P=0.42 | 12 | 30 | 7.65 (0- 50.6) | NA | NA | 0.017 P=0.68 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.26 | 0.19 | -1.35 | 0.18 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | -0.56 (-1- -0.082) P=0.022 | 16 | 22 | 0.000116 (0- 97.8) | NA | NA | -0.05 P=0.38 |
MR-Egger | 27 | -0.38 (-1- 0.24) P=0.24 | 16 | 22 | 0.000116 (0- 97.8) | 25 | 0.47 | -0.05 P=0.38 |
Weighted median | 27 | -0.71 (-1.4- -0.049) P=0.035 | 16 | 22 | 0.000116 (0- 97.8) | NA | NA | -0.05 P=0.38 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.56 | 0.24 | -2.3 | 0.03 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Cholecystectomy (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, -0.96, P = 0.17, N = 378) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.46, -0.24, P = 0.15, N = 378) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.88, -0.16, P = 0.54, N = 378) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.16, 0.54, P = 0.017, N = 378) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.75, -0.17, P = 0.37, N = 378) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.38, 0.0079, P = 0.96, N = 378) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.13, -0.45, P = 0.069, N = 378) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, -0.22, P = 0.34, N = 378) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.16, -0.14, P = 0.55, N = 378) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.046, -0.19, P = 0.62, N = 378) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, 0.084, P = 0.68, N = 378) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.04, -0.076, P = 0.86, N = 378) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, -0.041, P = 0.87, N = 378) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.95, -0.16, P = 0.67, N = 378) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.16, 0.18, P = 0.43, N = 378) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.26, -0.19, P = 0.34, N = 378) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.04, 0.039, P = 0.93, N = 378) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.12, 0.34, P = 0.21, N = 378) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.63, 0.11, P = 0.54, N = 378) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.31, 0.18, P = 0.31, N = 378) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.17, -0.33, P = 0.12, N = 378) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.76, 0.14, P = 0.47, N = 378) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.04, -0.61, P = 0.15, N = 378) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.74, -0.0048, P = 0.98, N = 378) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.18, 0.18, P = 0.4, N = 378) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.88, -0.05, P = 0.85, N = 378) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.017, -0.083, P = 0.9, N = 378) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.15, 0.28, P = 0.25, N = 378) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.21, -0.19, P = 0.36, N = 378) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.46, 0.16, P = 0.32, N = 378) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.22, -0.25, P = 0.2, N = 378) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.52, -0.048, P = 0.77, N = 378) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.73, 0.24, P = 0.19, N = 378) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.074, -0.16, P = 0.61, N = 378) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, -0.57, P = 0.07, N = 378) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.085, -0.51, P = 0.093, N = 378) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.18, -0.23, P = 0.29, N = 378) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.52, 0.14, P = 0.41, N = 378) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.52, -0.16, P = 0.33, N = 378) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.078, 0.79, P = 0.016, N = 378) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.31, 0.062, P = 0.72, N = 378) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.5, 0.14, P = 0.41, N = 378) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.8, -0.065, P = 0.75, N = 378) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.75, -0.18, P = 0.33, N = 378) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.73, 0.03, P = 0.87, N = 378) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, 0.31, P = 0.13, N = 378) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, -0.25, P = 0.23, N = 378) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.45, -0.0087, P = 0.96, N = 378) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.049, -0.17, P = 0.67, N = 378) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.025, -0.54, P = 0.34, N = 378) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 50 | 0.15 (-0.26- 0.56) P=0.47 | 12 | 30 | 5.78 (0- 71.1) | NA | NA | -0.06 P=0.14 |
MR-Egger | 50 | 0.39 (-0.12- 0.9) P=0.14 | 12 | 30 | 5.78 (0- 71.1) | 51 | 0.34 | -0.06 P=0.14 |
Weighted median | 50 | -0.039 (-0.64- 0.57) P=0.9 | 12 | 30 | 5.78 (0- 71.1) | NA | NA | -0.06 P=0.14 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.15 | 0.21 | 0.72 | 0.47 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | -0.13 (-0.61- 0.36) P=0.61 | 16 | 22 | 0 (0- 77.1) | NA | NA | -0.037 P=0.53 |
MR-Egger | 27 | 0.0062 (-0.63- 0.64) P=0.98 | 16 | 22 | 0 (0- 77.1) | 27 | 0.36 | -0.037 P=0.53 |
Weighted median | 27 | -0.12 (-0.81- 0.57) P=0.73 | 16 | 22 | 0 (0- 77.1) | NA | NA | -0.037 P=0.53 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.17 | 0.2 | -0.87 | 0.39 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Retinopathy (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, 1.1, P = 0.14, N = 268) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.48, 0.29, P = 0.13, N = 268) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.89, -0.25, P = 0.42, N = 268) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.17, -0.53, P = 0.033, N = 268) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.75, -0.23, P = 0.29, N = 268) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.39, -0.076, P = 0.7, N = 268) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.013, 0.23, P = 0.8, N = 268) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.13, 0.64, P = 0.023, N = 268) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, -0.011, P = 0.97, N = 268) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.17, 0.037, P = 0.88, N = 268) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.05, -0.53, P = 0.21, N = 268) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, 0.033, P = 0.88, N = 268) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.037, 0.63, P = 0.21, N = 268) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, -0.065, P = 0.82, N = 268) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.95, 0.24, P = 0.57, N = 268) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.15, -0.19, P = 0.46, N = 268) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.26, -0.42, P = 0.06, N = 268) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.041, -0.19, P = 0.7, N = 268) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.12, 0.45, P = 0.14, N = 268) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.64, 0.011, P = 0.96, N = 268) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.34, -0.27, P = 0.16, N = 268) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.17, -0.21, P = 0.37, N = 268) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.76, -0.19, P = 0.37, N = 268) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.034, -0.32, P = 0.54, N = 268) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.75, 0.063, P = 0.77, N = 268) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.17, 0.27, P = 0.27, N = 268) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.9, 0.024, P = 0.94, N = 268) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.021, -0.027, P = 0.97, N = 268) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, 0.4, P = 0.14, N = 268) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.21, -0.15, P = 0.52, N = 268) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.49, -0.2, P = 0.28, N = 268) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.23, 0.06, P = 0.78, N = 268) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.54, -0.12, P = 0.49, N = 268) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.72, -0.35, P = 0.092, N = 268) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.073, -0.23, P = 0.52, N = 268) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, 0.015, P = 0.97, N = 268) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.093, 0.037, P = 0.91, N = 268) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.18, 0.26, P = 0.29, N = 268) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.52, 0.12, P = 0.52, N = 268) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.52, -0.02, P = 0.91, N = 268) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.073, -0.46, P = 0.22, N = 268) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.33, 0.0037, P = 0.98, N = 268) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.5, 0.13, P = 0.47, N = 268) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.81, -0.26, P = 0.26, N = 268) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.73, -0.27, P = 0.18, N = 268) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.74, 0.16, P = 0.43, N = 268) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, -0.2, P = 0.39, N = 268) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, 0.072, P = 0.75, N = 268) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.45, 0.11, P = 0.55, N = 268) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.06, -0.07, P = 0.86, N = 268) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.026, 0.96, P = 0.1, N = 268) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | -0.39 (-0.81- 0.027) P=0.067 | 12 | 30 | 0.000154 (0- 74.8) | NA | NA | -0.015 P=0.73 |
MR-Egger | 51 | -0.33 (-0.88- 0.21) P=0.24 | 12 | 30 | 0.000154 (0- 74.8) | 47 | 0.56 | -0.015 P=0.73 |
Weighted median | 51 | -0.42 (-1- 0.19) P=0.18 | 12 | 30 | 0.000154 (0- 74.8) | NA | NA | -0.015 P=0.73 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.39 | 0.21 | -1.83 | 0.07 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | -0.066 (-0.49- 0.36) P=0.76 | 16 | 22 | 0 (0- 29.4) | NA | NA | -0.052 P=0.41 |
MR-Egger | 27 | 0.12 (-0.56- 0.8) P=0.73 | 16 | 22 | 0 (0- 29.4) | 16 | 0.91 | -0.052 P=0.41 |
Weighted median | 27 | -0.055 (-0.75- 0.64) P=0.88 | 16 | 22 | 0 (0- 29.4) | NA | NA | -0.052 P=0.41 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.15 | 0.2 | 0.74 | 0.46 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Priapism (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, -0.31, P = 0.76, N = 167) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.48, 0.2, P = 0.44, N = 167) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.89, 0.32, P = 0.44, N = 167) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.13, -0.91, P = 0.014, N = 167) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.76, -0.2, P = 0.49, N = 167) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.39, 0.42, P = 0.11, N = 167) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.13, 0.12, P = 0.77, N = 167) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, -0.45, P = 0.22, N = 167) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.18, -0.11, P = 0.75, N = 167) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.048, -0.053, P = 0.93, N = 167) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.8, 0.095, P = 0.77, N = 167) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.045, 0.56, P = 0.4, N = 167) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.14, -0.66, P = 0.076, N = 167) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.94, 0.95, P = 0.1, N = 167) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.15, -0.18, P = 0.62, N = 167) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.21, -0.74, P = 0.043, N = 167) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.042, 0.11, P = 0.86, N = 167) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.11, 0.053, P = 0.91, N = 167) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.62, 0.095, P = 0.72, N = 167) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.31, 0.35, P = 0.23, N = 167) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.14, 0.12, P = 0.75, N = 167) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.77, 0.2, P = 0.48, N = 167) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.042, -0.5, P = 0.43, N = 167) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.73, -0.069, P = 0.8, N = 167) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.2, 0.21, P = 0.53, N = 167) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.91, -0.28, P = 0.53, N = 167) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, 0.59, P = 0.11, N = 167) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.2, 0.51, P = 0.092, N = 167) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.45, 0.19, P = 0.41, N = 167) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.23, 0.11, P = 0.74, N = 167) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.53, 0.015, P = 0.95, N = 167) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.7, -0.66, P = 0.013, N = 167) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.078, 0.16, P = 0.75, N = 167) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, -0.19, P = 0.69, N = 167) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.11, -0.7, P = 0.093, N = 167) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.19, -0.076, P = 0.83, N = 167) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.52, -0.088, P = 0.74, N = 167) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.52, 0.54, P = 0.038, N = 167) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.075, -0.54, P = 0.31, N = 167) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.29, 0.1, P = 0.7, N = 167) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.5, -0.035, P = 0.9, N = 167) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.8, -0.65, P = 0.043, N = 167) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.73, -0.15, P = 0.57, N = 167) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.72, -0.1, P = 0.71, N = 167) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.21, 0.087, P = 0.79, N = 167) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.23, 0.071, P = 0.83, N = 167) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.46, 0.023, P = 0.93, N = 167) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.045, -0.54, P = 0.39, N = 167) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.027, 0.42, P = 0.58, N = 167) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 49 | -0.29 (-0.93- 0.35) P=0.38 | 12 | 28 | 1.25e-05 (0- 95.1) | NA | NA | -0.062 P=0.33 |
MR-Egger | 49 | -0.047 (-0.85- 0.76) P=0.91 | 12 | 28 | 1.25e-05 (0- 95.1) | 52 | 0.3 | -0.062 P=0.33 |
Weighted median | 49 | -0.1 (-1- 0.82) P=0.83 | 12 | 28 | 1.25e-05 (0- 95.1) | NA | NA | -0.062 P=0.33 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.29 | 0.33 | -0.89 | 0.38 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 26 | -0.16 (-0.87- 0.56) P=0.67 | 15 | 20 | 0 (0- 84.1) | NA | NA | -0.19 P=0.036 |
MR-Egger | 26 | 0.51 (-0.44- 1.5) P=0.3 | 15 | 20 | 0 (0- 84.1) | 18 | 0.8 | -0.19 P=0.036 |
Weighted median | 26 | 0.012 (-1- 1) P=0.98 | 15 | 20 | 0 (0- 84.1) | NA | NA | -0.19 P=0.036 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.13 | 0.18 | 0.71 | 0.49 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Leg Ulcer (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, -0.66, P = 0.33, N = 394) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.46, 0.13, P = 0.41, N = 394) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.88, -0.18, P = 0.47, N = 394) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.16, -0.47, P = 0.031, N = 394) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.74, -0.26, P = 0.17, N = 394) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.38, 0.2, P = 0.22, N = 394) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.01, -0.94, P = 0.31, N = 394) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.12, -0.25, P = 0.28, N = 394) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, -0.19, P = 0.39, N = 394) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.16, 0.29, P = 0.21, N = 394) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.046, 0.26, P = 0.49, N = 394) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, -0.28, P = 0.15, N = 394) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.041, 0.058, P = 0.89, N = 394) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, 0.39, P = 0.1, N = 394) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.95, -0.15, P = 0.69, N = 394) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.16, 0.14, P = 0.51, N = 394) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.26, 0.059, P = 0.75, N = 394) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.039, 0.22, P = 0.59, N = 394) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.12, 0.23, P = 0.38, N = 394) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.63, -0.11, P = 0.53, N = 394) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.31, 0.073, P = 0.67, N = 394) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.17, -0.078, P = 0.7, N = 394) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.76, -0.11, P = 0.56, N = 394) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.038, -0.54, P = 0.2, N = 394) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.73, -0.12, P = 0.48, N = 394) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.18, -0.048, P = 0.82, N = 394) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.89, 0.076, P = 0.76, N = 394) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.019, -1, P = 0.085, N = 394) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, 0.25, P = 0.27, N = 394) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.21, -0.2, P = 0.3, N = 394) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.46, 0.16, P = 0.3, N = 394) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.22, 0.054, P = 0.77, N = 394) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.53, -0.073, P = 0.64, N = 394) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.73, 0.0054, P = 0.98, N = 394) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.074, 0.1, P = 0.74, N = 394) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, 0.082, P = 0.78, N = 394) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.088, 0.029, P = 0.92, N = 394) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.18, -0.49, P = 0.019, N = 394) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.52, 0.057, P = 0.72, N = 394) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.52, 0.085, P = 0.6, N = 394) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.077, 0.53, P = 0.091, N = 394) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.32, -0.08, P = 0.63, N = 394) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.5, -0.25, P = 0.13, N = 394) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.8, 0.012, P = 0.95, N = 394) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.75, -0.11, P = 0.53, N = 394) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.73, 0.34, P = 0.057, N = 394) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, 0.062, P = 0.75, N = 394) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, -0.21, P = 0.29, N = 394) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.45, -0.11, P = 0.49, N = 394) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.048, 0.47, P = 0.2, N = 394) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.025, 0.56, P = 0.29, N = 394) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | -0.022 (-0.4- 0.36) P=0.91 | 12 | 30 | 0 (0- 70.1) | NA | NA | -0.045 P=0.24 |
MR-Egger | 51 | 0.15 (-0.32- 0.63) P=0.53 | 12 | 30 | 0 (0- 70.1) | 50 | 0.42 | -0.045 P=0.24 |
Weighted median | 51 | -0.3 (-0.81- 0.2) P=0.24 | 12 | 30 | 0 (0- 70.1) | NA | NA | -0.045 P=0.24 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.02 | 0.19 | -0.12 | 0.91 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | 0.054 (-0.4- 0.5) P=0.81 | 16 | 22 | 0.000147 (0- 94) | NA | NA | -0.053 P=0.32 |
MR-Egger | 27 | 0.24 (-0.34- 0.83) P=0.42 | 16 | 22 | 0.000147 (0- 94) | 25 | 0.48 | -0.053 P=0.32 |
Weighted median | 27 | -0.29 (-0.93- 0.35) P=0.37 | 16 | 22 | 0.000147 (0- 94) | NA | NA | -0.053 P=0.32 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.17 | 0.16 | 1.12 | 0.27 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | eGFR (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.98, 0.37, P = 0.23, N = 365) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.46, -0.044, P = 0.54, N = 365) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.88, -0.092, P = 0.43, N = 365) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.16, 0.0081, P = 0.94, N = 365) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.74, 0.059, P = 0.5, N = 365) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.39, -0.087, P = 0.26, N = 365) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.011, -0.44, P = 0.22, N = 365) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.12, -0.025, P = 0.83, N = 365) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, -0.039, P = 0.71, N = 365) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.17, 0.094, P = 0.32, N = 365) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.049, 0.023, P = 0.89, N = 365) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, 0.1, P = 0.27, N = 365) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.041, 0.088, P = 0.63, N = 365) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.12, 0.08, P = 0.48, N = 365) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.95, -0.22, P = 0.18, N = 365) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.15, 0.0076, P = 0.94, N = 365) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.26, -0.12, P = 0.15, N = 365) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.041, 0.15, P = 0.43, N = 365) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.12, -0.065, P = 0.58, N = 365) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.63, -0.17, P = 0.032, N = 365) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.31, 0.061, P = 0.44, N = 365) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.16, 0.18, P = 0.06, N = 365) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.76, -0.097, P = 0.24, N = 365) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.038, -0.15, P = 0.46, N = 365) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.74, -0.078, P = 0.34, N = 365) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.18, 0.29, P = 0.0023, N = 365) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.88, -0.011, P = 0.93, N = 365) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.021, -0.45, P = 0.086, N = 365) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.15, -0.022, P = 0.83, N = 365) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.21, -0.04, P = 0.65, N = 365) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.46, 0.12, P = 0.1, N = 365) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.23, 0.0076, P = 0.93, N = 365) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.54, -0.14, P = 0.061, N = 365) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.73, 0.023, P = 0.78, N = 365) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.071, 0.27, P = 0.064, N = 365) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, -0.15, P = 0.28, N = 365) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.088, 0.086, P = 0.52, N = 365) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.18, -0.014, P = 0.89, N = 365) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.52, 0.048, P = 0.52, N = 365) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.52, -0.082, P = 0.25, N = 365) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.078, -0.0094, P = 0.95, N = 365) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.32, -0.02, P = 0.79, N = 365) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.5, -0.019, P = 0.8, N = 365) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.8, -0.036, P = 0.69, N = 365) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.74, -0.017, P = 0.84, N = 365) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.73, 0.071, P = 0.39, N = 365) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.21, -0.038, P = 0.67, N = 365) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, -0.035, P = 0.69, N = 365) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.45, 0.058, P = 0.45, N = 365) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.051, 0.11, P = 0.53, N = 365) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.025, 0.047, P = 0.85, N = 365) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | 0.064 (-0.11- 0.24) P=0.48 | 12 | 30 | 3e-04 (0- 83.2) | NA | NA | -0.011 P=0.52 |
MR-Egger | 51 | 0.11 (-0.11- 0.33) P=0.34 | 12 | 30 | 3e-04 (0- 83.2) | 52 | 0.35 | -0.011 P=0.52 |
Weighted median | 51 | 0.11 (-0.14- 0.37) P=0.39 | 12 | 30 | 3e-04 (0- 83.2) | NA | NA | -0.011 P=0.52 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.06 | 0.09 | 0.71 | 0.48 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | 0.046 (-0.18- 0.27) P=0.69 | 16 | 22 | 3.26 (0- 98.9) | NA | NA | -0.016 P=0.55 |
MR-Egger | 27 | 0.1 (-0.19- 0.4) P=0.5 | 16 | 22 | 3.26 (0- 98.9) | 31 | 0.2 | -0.016 P=0.55 |
Weighted median | 27 | 0.074 (-0.22- 0.37) P=0.62 | 16 | 22 | 3.26 (0- 98.9) | NA | NA | -0.016 P=0.55 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.03 | 0.08 | -0.34 | 0.74 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-glutamine (Shin et al/Long et al) | Aseptic Necrosis (CSSCD) |
rs524219(G)/1:100821493 | CDC14A | (0.93, -0.28, P = 4.7e-06, N = 1958) | (0.99, 0.95, P = 0.19, N = 394) |
rs11166473(T)/1:101010015* | GPR88 | (0.92, -0.36, P = 9.3e-08, N = 1958) | (0.46, -0.1, P = 0.53, N = 394) |
rs2811981(A)/1:23950147* | MDS2 | (0.89, -0.12, P = 3.8e-06, N = 1958) | (0.88, 0.27, P = 0.3, N = 394) |
rs3127550(A)/1:49431909* | AGBL4 | (0.49, 0.19, P = 5.7e-06, N = 1958) | (0.16, -0.19, P = 0.41, N = 394) |
rs7394051(T)/10:122008026* | intergenic | (0.7, 0.0055, P = 2.2e-06, N = 7372) | (0.74, -0.083, P = 0.67, N = 394) |
rs10762121(T)/10:68708291 | CTNNA3 | (0.18, -0.0094, P = 3.1e-05, N = 1768) | (0.38, 0.15, P = 0.39, N = 394) |
rs11596604(A)/10:87141944* | intergenic | (0.024, 0.032, P = 2.5e-06, N = 1768) | (0.01, -0.31, P = 0.71, N = 394) |
rs7078003(T)/10:99359412* | HOGA1 | (0.17, 0.0087, P = 1.8e-06, N = 7372) | (0.12, 0.16, P = 0.52, N = 394) |
rs7131407(T)/11:128431418 | ETS1 | (0.13, 0.0082, P = 3.2e-05, N = 7372) | (0.16, -0.072, P = 0.76, N = 394) |
rs10431159(A)/11:70967219 | SHANK2 | (0.65, -0.0047, P = 4.8e-05, N = 7372) | (0.16, 0.27, P = 0.25, N = 394) |
rs17666239(A)/12:47194757* | SLC38A4 | (0.078, 0.0092, P = 1.7e-05, N = 7372) | (0.046, -0.1, P = 0.79, N = 394) |
rs735246(A)/12:52547743 | intergenic | (0.83, 0.0083, P = 4.8e-05, N = 7372) | (0.81, 0.2, P = 0.32, N = 394) |
rs774044(T)/12:56837979* | TIMELESS | (0.055, -0.015, P = 5.6e-07, N = 7372) | (0.041, 0.16, P = 0.71, N = 394) |
rs7313455(A)/12:56853231* | MIP | (0.44, 0.0062, P = 2.1e-08, N = 7372) | (0.13, -0.0075, P = 0.98, N = 394) |
rs2657879(A)/12:56865338* | GLS2 | (0.82, 0.015, P = 6.1e-18, N = 7372) | (0.95, -0.41, P = 0.28, N = 394) |
rs12232026(A)/12:56960766* | RBMS2 | (0.12, -0.0097, P = 4.4e-06, N = 7372) | (0.16, -0.16, P = 0.49, N = 394) |
rs941893(T)/14:100542061* | EVL | (0.74, -0.0049, P = 4.1e-05, N = 7372) | (0.26, -0.4, P = 0.038, N = 394) |
rs144325715(A)/14:95948631 | intergenic | (0.021, -0.74, P = 5.3e-06, N = 1958) | (0.039, 0.12, P = 0.78, N = 394) |
rs11636988(A)/15:26822814* | GABRB3 | (0.57, -0.16, P = 6.5e-06, N = 1958) | (0.12, -0.021, P = 0.94, N = 394) |
rs1910151(A)/15:38158699* | intergenic | (0.64, 0.0048, P = 2.2e-05, N = 7372) | (0.63, -0.045, P = 0.8, N = 394) |
rs35150605(TAAC)/15:88047276 | RP11-648K4.2 | (0.25, -0.15, P = 6.3e-06, N = 1958) | (0.31, -0.3, P = 0.1, N = 394) |
rs2560409(C)/16:24099496 | PRKCB | (0.51, 0.26, P = 1.4e-06, N = 1958) | (0.17, -0.31, P = 0.14, N = 394) |
rs16977047(T)/16:27924612* | GSG1L | (0.7, -0.0056, P = 1.1e-06, N = 7372) | (0.76, -0.14, P = 0.46, N = 394) |
rs12447776(T)/16:84053027 | SLC38A8 | (0.019, 0.029, P = 4.1e-05, N = 1768) | (0.038, -0.049, P = 0.91, N = 394) |
rs9912445(A)/17:37202603 | LRRC37A11P | (0.79, 0.0052, P = 1.7e-05, N = 7372) | (0.73, -0.33, P = 0.071, N = 394) |
rs8069305(A)/17:53638670 | CTD-2033D24.2 | (0.68, -0.0047, P = 4.9e-05, N = 7372) | (0.18, -0.08, P = 0.72, N = 394) |
rs4798682(G)/18:8738265 | SOGA2 | (0.74, 0.15, P = 5e-06, N = 1958) | (0.89, 0.18, P = 0.5, N = 394) |
rs73971292(C)/2:161821810 | intergenic | (0.023, -0.65, P = 5.1e-06, N = 1958) | (0.019, -0.89, P = 0.13, N = 394) |
rs780093(T)/2:27742603* | GCKR | (0.4, -0.0058, P = 1.9e-07, N = 7372) | (0.14, -0.24, P = 0.32, N = 394) |
rs2199619(T)/2:28854958* | PLB1 | (0.28, 0.0054, P = 5.2e-06, N = 7372) | (0.21, 0.12, P = 0.55, N = 394) |
rs992580(C)/20:15246472* | MACROD2 | (0.44, 0.15, P = 6.2e-06, N = 1958) | (0.46, -0.18, P = 0.28, N = 394) |
rs6137021(A)/20:20375560* | RALGAPA2 | (0.67, -0.0083, P = 4.5e-05, N = 1768) | (0.22, -0.28, P = 0.16, N = 394) |
rs2425059(C)/20:33912371* | UQCC1 | (0.38, 0.15, P = 5.6e-06, N = 1958) | (0.53, 0.0086, P = 0.96, N = 394) |
rs2948828(A)/3:124811942 | SLC12A8 | (0.56, 0.0053, P = 2.2e-05, N = 7372) | (0.73, 0.023, P = 0.9, N = 394) |
rs73168973(T)/3:151691599 | intergenic | (0.21, -0.23, P = 4e-07, N = 1958) | (0.074, -0.17, P = 0.6, N = 394) |
rs4699183(A)/4:106444435 | AC004066.2 | (0.9, -0.27, P = 6.2e-06, N = 1958) | (0.92, -0.36, P = 0.25, N = 394) |
rs138354882(A)/4:171429817 | intergenic | (0.028, -0.36, P = 4.5e-06, N = 1958) | (0.088, 0.05, P = 0.87, N = 394) |
rs7667615(C)/4:182921992* | AC108142.1 | (0.26, -0.17, P = 6.1e-06, N = 1958) | (0.18, -0.37, P = 0.093, N = 394) |
rs542300(A)/6:12252237 | intergenic | (0.51, -0.13, P = 7.2e-06, N = 1958) | (0.52, -0.022, P = 0.9, N = 394) |
rs9478369(A)/6:153269698* | intergenic | (0.25, 0.0049, P = 4.1e-05, N = 7372) | (0.52, -0.17, P = 0.32, N = 394) |
rs71569656(C)/6:22903627 | RP1-209A6.1 | (0.28, -0.14, P = 8.9e-06, N = 1958) | (0.077, 0.51, P = 0.13, N = 394) |
rs2748991(T)/6:52596516 | intergenic | (0.45, -0.007, P = 2.3e-06, N = 5604) | (0.32, -0.15, P = 0.38, N = 394) |
rs1582256(C)/7:126634804 | GRM8 | (0.51, -0.18, P = 8.5e-06, N = 1958) | (0.5, -0.046, P = 0.79, N = 394) |
rs767772939(CT)/7:128350744 | FAM71F1 | (0.096, 0.26, P = 4.1e-06, N = 1958) | (0.8, -0.31, P = 0.13, N = 394) |
rs17837468(A)/7:138309274 | SVOPL | (0.88, 0.0088, P = 3.8e-05, N = 7372) | (0.75, 0.06, P = 0.74, N = 394) |
rs17152416(T)/7:25765238 | AC003090.1 | (0.76, 0.0049, P = 3.9e-05, N = 7372) | (0.73, -0.016, P = 0.93, N = 394) |
rs4722699(T)/7:27456500* | intergenic | (0.27, -0.0048, P = 3.8e-05, N = 7372) | (0.2, 0.21, P = 0.31, N = 394) |
rs1799211(T)/7:76240677 | UPK3B | (0.41, -0.0082, P = 4.2e-06, N = 1768) | (0.24, 0.15, P = 0.45, N = 394) |
rs9314463(A)/8:2525166 | RP11-134O21.1 | (0.19, 0.27, P = 9.1e-07, N = 1958) | (0.45, -0.29, P = 0.087, N = 394) |
rs112508772(A)/9:140016354 | snoU13 | (0.025, 0.48, P = 7e-07, N = 1958) | (0.048, -0.17, P = 0.65, N = 394) |
rs7848854(C)/9:7766733* | intergenic | (0.11, 0.0083, P = 2.4e-05, N = 7372) | (0.025, 0.097, P = 0.86, N = 394) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 51 | -0.12 (-0.49- 0.26) P=0.53 | 12 | 30 | 3.44 (0- 41.6) | NA | NA | 0.0033 P=0.93 |
MR-Egger | 51 | -0.13 (-0.62- 0.36) P=0.6 | 12 | 30 | 3.44 (0- 41.6) | 45 | 0.62 | 0.0033 P=0.93 |
Weighted median | 51 | -0.14 (-0.73- 0.45) P=0.64 | 12 | 30 | 3.44 (0- 41.6) | NA | NA | 0.0033 P=0.93 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.12 | 0.19 | -0.62 | 0.54 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | -0.21 (-0.69- 0.26) P=0.38 | 16 | 22 | 8.21 (0- 64.5) | NA | NA | -0.029 P=0.61 |
MR-Egger | 27 | -0.11 (-0.73- 0.51) P=0.72 | 16 | 22 | 8.21 (0- 64.5) | 26 | 0.42 | -0.029 P=0.61 |
Weighted median | 27 | -0.19 (-0.91- 0.54) P=0.61 | 16 | 22 | 8.21 (0- 64.5) | NA | NA | -0.029 P=0.61 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.16 | 0.18 | -0.9 | 0.38 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Pyroglutamine (Shin et al/Long et al) | Painful Crises (CSSCD) |
rs7512221(T)/1:220601623* | AC096644.1 | (0.95, -0.04, P = 5e-06, N = 7354) | (0.58, 0.18, P = 0.13, N = 1101) |
rs7556040(T)/1:220626220* | RP11-410C4.1 | (0.95, -0.041, P = 3.4e-06, N = 7354) | (0.83, -0.37, P = 0.014, N = 1101) |
rs9662967(T)/1:244957186 | intergenic | (0.7, -0.019, P = 7.4e-07, N = 7354) | (0.38, -0.041, P = 0.74, N = 1101) |
rs12098127(G)/1:48967002* | RP11-329A14.2 | (0.18, 0.2, P = 2.6e-06, N = 1956) | (0.26, 0.035, P = 0.79, N = 1101) |
rs56713017(C)/10:129008570 | DOCK1 | (0.11, 0.2, P = 5.4e-06, N = 1956) | (0.18, 0.053, P = 0.72, N = 1101) |
rs11007183(A)/10:28939852* | RNU4ATAC6P | (0.11, -0.025, P = 9.8e-06, N = 7354) | (0.12, -0.056, P = 0.74, N = 1101) |
rs2512652(C)/11:131259195 | RNU6ATAC12P | (0.7, -0.052, P = 5.8e-06, N = 1764) | (0.88, -0.061, P = 0.72, N = 1101) |
rs11223638(T)/11:133819222 | IGSF9B | (0.14, -0.25, P = 3.7e-07, N = 1956) | (0.33, -0.052, P = 0.68, N = 1101) |
rs11613331(A)/12:351467* | SLC6A13 | (0.55, 0.037, P = 2.2e-25, N = 7354) | (0.28, 0.26, P = 0.044, N = 1101) |
rs4140962(A)/12:475579* | KDM5A | (0.41, -0.033, P = 1.2e-19, N = 7354) | (0.64, -0.25, P = 0.042, N = 1101) |
rs11116175(A)/12:84431621 | intergenic | (0.16, 0.15, P = 7.1e-06, N = 1956) | (0.035, -0.13, P = 0.68, N = 1101) |
rs9547116(C)/13:85845121 | intergenic | (0.45, 0.16, P = 5.2e-06, N = 1956) | (0.11, -0.13, P = 0.49, N = 1101) |
rs9547119(G)/13:85846010 | intergenic | (0.45, 0.16, P = 4e-06, N = 1956) | (0.11, -0.14, P = 0.48, N = 1101) |
rs1600760(A)/14:85104707* | intergenic | (0.66, -0.022, P = 5.1e-09, N = 7354) | (0.43, -0.1, P = 0.38, N = 1101) |
rs12905776(T)/15:55170012 | intergenic | (0.53, 0.11, P = 4e-06, N = 1956) | (0.27, 0.081, P = 0.53, N = 1101) |
rs2551453(T)/18:53699500 | CTD-2008L17.2 | (0.26, -0.02, P = 7.3e-06, N = 7354) | (0.063, -0.15, P = 0.53, N = 1101) |
rs6511763(C)/19:12186857* | ZNF844 | (0.15, -0.15, P = 8.7e-06, N = 1956) | (0.67, -0.13, P = 0.3, N = 1101) |
rs1132054(T)/19:49102399* | SULT2B1 | (0.57, 0.02, P = 2.3e-06, N = 5590) | (0.25, -0.00082, P = 1, N = 1101) |
rs715(T)/2:211543055* | CPS1 | (0.71, 0.036, P = 2.5e-16, N = 7354) | (0.82, -0.11, P = 0.45, N = 1101) |
rs2371015(T)/2:211549609* | intergenic | (0.34, 0.021, P = 2.2e-08, N = 7354) | (0.37, 0.1, P = 0.39, N = 1101) |
rs11687290(A)/2:211647954* | intergenic | (0.73, -0.017, P = 7.4e-06, N = 7354) | (0.83, -0.082, P = 0.6, N = 1101) |
rs79740025(T)/2:27677763* | IFT172 | (0.19, 0.2, P = 2.9e-06, N = 1956) | (0.024, -0.15, P = 0.7, N = 1101) |
rs239019(G)/21:17699639* | LINC00478 | (0.97, 0.41, P = 9.1e-06, N = 1956) | (0.39, -0.08, P = 0.5, N = 1101) |
rs80164931(G)/21:17705595 | LINC00478 | (0.032, 0.43, P = 1.8e-06, N = 1956) | (0.014, -0.4, P = 0.39, N = 1101) |
rs139049(T)/22:44323597* | PNPLA3 | (0.41, 0.11, P = 3.9e-06, N = 1956) | (0.36, -0.047, P = 0.7, N = 1101) |
rs13057977(T)/22:49047339 | FAM19A5 | (0.15, 0.21, P = 9.9e-06, N = 1956) | (0.32, 0.2, P = 0.1, N = 1101) |
rs77502708(C)/3:181192900 | SOX2-OT | (0.026, 0.48, P = 2e-06, N = 1956) | (0.099, 0.2, P = 0.32, N = 1101) |
rs2159892(T)/3:45383676* | intergenic | (0.64, -0.02, P = 3.6e-08, N = 7354) | (0.6, -0.043, P = 0.71, N = 1101) |
rs17279437(A)/3:45814094* | SLC6A20 | (0.095, 0.059, P = 1.3e-20, N = 7354) | (0.013, -0.0023, P = 1, N = 1101) |
rs4071(C)/4:101319165* | EMCN | (0.76, -0.15, P = 8.9e-06, N = 1956) | (0.84, 0.091, P = 0.57, N = 1101) |
rs17776892(A)/4:137356574 | intergenic | (0.3, 0.035, P = 4e-06, N = 1764) | (0.16, -0.076, P = 0.63, N = 1101) |
rs73863916(T)/4:169462085 | PALLD | (0.021, 0.57, P = 4.5e-06, N = 1956) | (0.17, -0.029, P = 0.85, N = 1101) |
rs11729049(A)/4:180719585 | intergenic | (0.63, 0.017, P = 3.7e-06, N = 7354) | (0.87, -0.26, P = 0.13, N = 1101) |
rs17250948(C)/4:182771958* | intergenic | (0.4, 0.14, P = 4.5e-06, N = 1956) | (0.28, -0.12, P = 0.34, N = 1101) |
rs1203809(G)/4:2449545 | RP11-503N18.3 | (0.38, 0.09, P = 2.1e-06, N = 1956) | (0.2, 0.15, P = 0.3, N = 1101) |
rs73221060(T)/4:31439776 | intergenic | (0.051, -0.28, P = 1.8e-06, N = 1956) | (0.34, -0.017, P = 0.89, N = 1101) |
rs12233879(A)/4:54263624* | FIP1L1 | (0.14, -0.027, P = 4.5e-07, N = 7354) | (0.046, -0.22, P = 0.44, N = 1101) |
rs77471043(G)/4:75060135 | MTHFD2L | (0.01, 0.91, P = 2e-06, N = 1956) | (0.16, 0.15, P = 0.33, N = 1101) |
rs11727631(T)/4:77576975 | SHROOM3 | (0.29, 0.017, P = 5.2e-06, N = 7354) | (0.47, -0.067, P = 0.57, N = 1101) |
rs252984(T)/5:106752337 | EFNA5 | (0.19, -0.02, P = 7.6e-06, N = 7354) | (0.23, 0.17, P = 0.2, N = 1101) |
rs1449167(T)/5:119998008* | PRR16 | (0.64, 0.035, P = 5.4e-06, N = 1764) | (0.72, -0.1, P = 0.42, N = 1101) |
rs199639973(A)/5:97107215 | intergenic | (0.052, 0.28, P = 1.3e-06, N = 1956) | (0.057, 0.41, P = 0.11, N = 1101) |
rs9346808(C)/6:160532652* | RP11-288H12.4 | (0.23, -0.21, P = 7.5e-06, N = 1956) | (0.3, -0.083, P = 0.52, N = 1101) |
rs12670725(A)/7:119577292* | intergenic | (0.81, 0.021, P = 6.2e-06, N = 7354) | (0.76, -0.049, P = 0.72, N = 1101) |
rs5882739(GT)/7:20429461 | ITGB8 | (0.24, -0.06, P = 6.2e-06, N = 1956) | (0.68, 0.16, P = 0.21, N = 1101) |
rs56142483(T)/8:41334474 | intergenic | (0.088, -0.24, P = 8e-07, N = 1956) | (0.17, -0.059, P = 0.7, N = 1101) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 46 | 1.1 (0.94- 1.4) P=0.21 | 11 | 24 | 0 (0- 74.8) | NA | NA | 0.014 P=0.62 |
MR-Egger | 46 | 1.1 (0.84- 1.4) P=0.54 | 11 | 24 | 0 (0- 74.8) | 40 | 0.64 | 0.014 P=0.62 |
Weighted median | 46 | 1.1 (0.85- 1.5) P=0.37 | 11 | 24 | 0 (0- 74.8) | NA | NA | 0.014 P=0.62 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.12 | 0.1 | 1.26 | 0.21 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 23 | 1.2 (0.97- 1.4) P=0.093 | 14 | 16 | 0 (0- 65.2) | NA | NA | -0.033 P=0.45 |
MR-Egger | 23 | 1.3 (0.94- 1.7) P=0.13 | 14 | 16 | 0 (0- 65.2) | 15 | 0.82 | -0.033 P=0.45 |
Weighted median | 23 | 1.2 (0.84- 1.6) P=0.35 | 14 | 16 | 0 (0- 65.2) | NA | NA | -0.033 P=0.45 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.16 | 0.1 | 1.68 | 0.11 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | cis-Aconitic acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs35324600(T)/11:22530939 | intergenic | (0.49, 0.15, P = 3.1e-06, N = 1947) | (0.28, 0.076, P = 0.16, N = 859) |
rs6539223(G)/12:106007537 | intergenic | (0.61, -0.1, P = 3.4e-06, N = 1947) | (0.89, -0.14, P = 0.065, N = 859) |
rs138450783(CA)/14:63994788* | PPP2R5E | (0.061, -0.33, P = 3.1e-06, N = 1947) | (0.061, 0.042, P = 0.67, N = 859) |
rs11648258(T)/16:82677875 | CDH13 | (0.11, 0.16, P = 4.4e-06, N = 1947) | (0.039, 0.27, P = 0.03, N = 859) |
rs4798545(C)/18:7258907 | intergenic | (0.63, 0.15, P = 8.2e-07, N = 1947) | (0.4, -0.00023, P = 1, N = 859) |
rs2302891(T)/2:217064533 | XRCC5 | (0.24, 0.14, P = 2.3e-06, N = 1947) | (0.3, -0.063, P = 0.24, N = 859) |
rs77430920(A)/3:1496695 | intergenic | (0.097, -0.26, P = 6.5e-07, N = 1947) | (0.024, -0.37, P = 0.017, N = 859) |
rs67411255(A)/3:162259082 | intergenic | (0.29, 0.18, P = 2.3e-06, N = 1947) | (0.45, -0.042, P = 0.37, N = 859) |
rs7662761(G)/4:182654376* | intergenic | (0.85, 0.19, P = 3.8e-06, N = 1947) | (0.81, -0.11, P = 0.066, N = 859) |
rs7719640(A)/5:3752812* | intergenic | (0.58, 0.18, P = 4.8e-06, N = 1947) | (0.31, -0.023, P = 0.65, N = 859) |
rs233947(A)/6:132324555* | RP11-69I8.3 | (0.18, 0.13, P = 4.5e-06, N = 1947) | (0.62, -0.026, P = 0.61, N = 859) |
rs55753187(C)/6:132717587 | MOXD1 | (0.29, 0.16, P = 8.2e-06, N = 1947) | (0.4, 0.027, P = 0.58, N = 859) |
rs62572814(A)/9:83198655 | intergenic | (0.072, 0.33, P = 9.4e-06, N = 1947) | (0.019, 0.02, P = 0.91, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 13 | -0.013 (-0.28- 0.26) P=0.92 | 20 | 13 | 29.6 (0- 89.6) | NA | NA | 0.043 P=0.67 |
MR-Egger | 13 | -0.26 (-1.4- 0.88) P=0.66 | 20 | 13 | 29.6 (0- 89.6) | 22 | 0.025 | 0.043 P=0.67 |
Weighted median | 13 | -0.13 (-0.41- 0.15) P=0.37 | 20 | 13 | 29.6 (0- 89.6) | NA | NA | 0.043 P=0.67 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.01 | 0.14 | -0.09 | 0.93 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 9 | 0.15 (-0.22- 0.52) P=0.43 | 19 | 8.9 | 52.9 (0- 92.3) | NA | NA | 0.018 P=0.92 |
MR-Egger | 9 | 0.043 (-1.9- 2) P=0.97 | 19 | 8.9 | 52.9 (0- 92.3) | 17 | 0.018 | 0.018 P=0.92 |
Weighted median | 9 | 0.024 (-0.33- 0.38) P=0.89 | 19 | 8.9 | 52.9 (0- 92.3) | NA | NA | 0.018 P=0.92 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.15 | 0.19 | 0.79 | 0.45 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Decanoylcarnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs2336566(T)/1:12085097* | MIIP | (0.81, -0.021, P = 3.5e-05, N = 7824) | (0.9, -0.049, P = 0.53, N = 859) |
rs332765(T)/1:174655782* | RABGAP1L | (0.36, 0.13, P = 2.4e-06, N = 1950) | (0.9, -0.075, P = 0.34, N = 859) |
rs1434889(A)/1:213511231* | intergenic | (0.69, -0.017, P = 5e-05, N = 7824) | (0.26, 0.089, P = 0.11, N = 859) |
rs7552404(A)/1:76135946* | intergenic | (0.7, 0.056, P = 3.3e-43, N = 7824) | (0.83, -0.12, P = 0.061, N = 859) |
rs699683(A)/1:76172512* | RP4-682C21.5 | (0.068, 0.038, P = 1e-06, N = 7824) | (0.024, 0.036, P = 0.82, N = 859) |
rs12130832(T)/1:76234294* | ACADM | (0.71, -0.037, P = 2.8e-19, N = 7824) | (0.79, 0.0095, P = 0.87, N = 859) |
rs56352044(T)/1:76248706 | RABGGTB | (0.23, -0.3, P = 9.1e-15, N = 1950) | (0.14, 0.15, P = 0.033, N = 859) |
rs1144337(T)/1:76278877 | MSH4 | (0.1, 0.034, P = 1.5e-07, N = 7824) | (0.19, -0.061, P = 0.31, N = 859) |
rs1796810(T)/1:76403305 | intergenic | (0.29, 0.034, P = 8.6e-17, N = 7824) | (0.32, -0.0091, P = 0.86, N = 859) |
rs3762410(A)/1:97189288* | PTBP2 | (0.3, -0.018, P = 2.8e-05, N = 7824) | (0.15, -0.042, P = 0.53, N = 859) |
rs12255398(C)/10:122875878 | intergenic | (0.21, -0.19, P = 3.6e-06, N = 1950) | (0.028, -0.04, P = 0.78, N = 859) |
rs7894167(C)/10:47556919* | intergenic | (0.38, 0.17, P = 3.8e-06, N = 1950) | (0.52, 0.1, P = 0.037, N = 859) |
rs11212307(A)/11:107506922* | ELMOD1 | (0.95, -0.04, P = 3.7e-05, N = 7824) | (0.94, -0.019, P = 0.85, N = 859) |
rs7116229(T)/11:113998407* | ZBTB16 | (0.036, 0.048, P = 1.8e-05, N = 7824) | (0.22, -0.036, P = 0.53, N = 859) |
rs12787276(T)/11:20313272* | intergenic | (0.25, 0.02, P = 3.3e-05, N = 7824) | (0.071, -0.16, P = 0.081, N = 859) |
rs11828392(A)/11:21413243* | NELL1 | (0.055, -0.045, P = 4.2e-05, N = 7824) | (0.012, -0.047, P = 0.83, N = 859) |
rs10769307(T)/11:47923603* | RP11-793I11.1 | (0.86, 0.024, P = 1.5e-05, N = 7824) | (0.74, 0.013, P = 0.8, N = 859) |
rs7130402(A)/11:48115606* | PTPRJ | (0.93, 0.034, P = 2.4e-05, N = 7824) | (0.91, -0.013, P = 0.88, N = 859) |
rs12289557(A)/11:8344945* | intergenic | (0.43, -0.18, P = 5.3e-06, N = 1950) | (0.028, 0.12, P = 0.42, N = 859) |
rs11225932(T)/11:97160858 | intergenic | (0.072, -0.35, P = 8.4e-06, N = 1950) | (0.013, 0.25, P = 0.24, N = 859) |
rs7973509(A)/12:40354147* | SLC2A13 | (0.27, -0.018, P = 2.2e-05, N = 7824) | (0.097, 0.042, P = 0.61, N = 859) |
rs6538742(A)/12:97203085* | C12orf55 | (0.72, -0.017, P = 4.4e-05, N = 7824) | (0.95, 0.044, P = 0.7, N = 859) |
rs1557093(T)/13:108378235* | FAM155A | (0.89, -0.25, P = 2.6e-06, N = 1950) | (0.79, 0.096, P = 0.095, N = 859) |
rs1220578(A)/13:24730147* | SPATA13 | (0.078, -0.032, P = 6.9e-06, N = 7824) | (0.098, 0.098, P = 0.22, N = 859) |
rs9546715(T)/13:85064464* | intergenic | (0.83, -0.021, P = 3.1e-05, N = 7824) | (0.88, -0.01, P = 0.89, N = 859) |
rs8003176(T)/14:88760692* | KCNK10 | (0.77, 0.036, P = 2e-05, N = 7824) | (0.9, 0.076, P = 0.34, N = 859) |
rs11848217(G)/14:93048314* | RIN3 | (0.24, -0.18, P = 7.1e-06, N = 1950) | (0.33, -0.029, P = 0.58, N = 859) |
rs2062541(A)/16:16127235* | ABCC1 | (0.61, 0.022, P = 2.9e-08, N = 7824) | (0.47, 0.048, P = 0.32, N = 859) |
rs45512591(C)/16:16147264* | ABCC1 | (0.28, -0.23, P = 4.7e-08, N = 1950) | (0.37, -0.056, P = 0.26, N = 859) |
rs12932433(T)/16:7114043* | RBFOX1 | (0.71, 0.019, P = 6.3e-06, N = 7824) | (0.59, 0.004, P = 0.94, N = 859) |
rs11657401(A)/17:12762029* | ARHGAP44 | (0.77, -0.022, P = 4.4e-05, N = 7824) | (0.91, -0.097, P = 0.24, N = 859) |
rs4889820(A)/17:78089762* | GAA | (0.99, 0.091, P = 3.5e-05, N = 7824) | (0.86, -0.06, P = 0.4, N = 859) |
rs8076629(A)/17:8024808* | HES7 | (0.074, -0.033, P = 2.8e-05, N = 7824) | (0.2, -0.02, P = 0.75, N = 859) |
rs948386(C)/18:19998810* | CTAGE1 | (0.58, 0.017, P = 3.3e-05, N = 7824) | (0.5, -0.051, P = 0.29, N = 859) |
rs3914856(C)/18:2413983 | intergenic | (0.12, -0.025, P = 1.7e-05, N = 7824) | (0.041, 0.21, P = 0.08, N = 859) |
rs2156436(T)/18:57457267* | intergenic | (0.031, 0.14, P = 1.7e-06, N = 7824) | (0.23, -0.027, P = 0.64, N = 859) |
rs7257107(T)/19:35462829* | intergenic | (0.61, 0.018, P = 3.6e-05, N = 7824) | (0.77, -0.2, P = 0.00062, N = 859) |
rs2239510(A)/19:36611284* | TBCB | (0.33, 0.018, P = 1.9e-05, N = 7824) | (0.23, 0.022, P = 0.7, N = 859) |
rs2140779(T)/2:121302719* | AC073257.2 | (0.15, -0.025, P = 9.9e-06, N = 7824) | (0.027, 0.11, P = 0.44, N = 859) |
rs10191469(G)/2:149419648* | EPC2 | (0.78, 0.17, P = 8.6e-06, N = 1950) | (0.36, -0.013, P = 0.79, N = 859) |
rs10203979(C)/2:179022751* | intergenic | (0.23, 0.18, P = 3.4e-06, N = 1950) | (0.36, -0.074, P = 0.14, N = 859) |
rs4675009(A)/2:226660503* | intergenic | (0.82, 0.21, P = 3.6e-06, N = 1950) | (0.82, -0.094, P = 0.14, N = 859) |
rs2290101(C)/2:33952055* | MYADML | (0.34, 0.017, P = 4.4e-05, N = 7824) | (0.44, -0.11, P = 0.025, N = 859) |
rs10495981(T)/2:49883809* | intergenic | (0.94, -0.034, P = 4.4e-05, N = 7824) | (0.99, -0.24, P = 0.25, N = 859) |
rs1203869(T)/20:22533223* | LINC00261 | (0.015, 0.099, P = 2.8e-05, N = 7824) | (0.15, -0.056, P = 0.39, N = 859) |
rs2298450(T)/21:37623447* | DOPEY2 | (0.37, -0.017, P = 2.2e-05, N = 7824) | (0.55, 0.0059, P = 0.9, N = 859) |
rs5755595(T)/22:35518839* | CTA-714B7.5 | (0.27, 0.24, P = 3.3e-06, N = 1950) | (0.055, 0.1, P = 0.35, N = 859) |
rs331869(T)/3:255395 | CHL1 | (0.98, -0.13, P = 2.8e-06, N = 7824) | (0.81, -0.061, P = 0.32, N = 859) |
rs2700436(T)/3:41573511* | ULK4 | (0.76, -0.018, P = 4.4e-05, N = 7824) | (0.9, -0.0033, P = 0.97, N = 859) |
rs6537038(A)/4:142166712* | RP11-586L23.1 | (0.4, -0.019, P = 4.9e-06, N = 7824) | (0.32, -0.012, P = 0.81, N = 859) |
rs35055965(T)/4:159193901* | RP11-597D13.7 | (0.24, -0.23, P = 3.6e-09, N = 1950) | (0.16, -0.023, P = 0.72, N = 859) |
rs8396(T)/4:159630817* | PPID | (0.7, 0.053, P = 8.7e-38, N = 7824) | (0.65, 0.014, P = 0.78, N = 859) |
rs10857319(T)/4:159729794* | FNIP2 | (0.35, 0.02, P = 1.1e-06, N = 7824) | (0.061, -0.071, P = 0.49, N = 859) |
rs10003821(T)/4:159877388* | C4orf45 | (0.36, -0.029, P = 1.6e-12, N = 7824) | (0.35, -0.0021, P = 0.97, N = 859) |
rs595580(A)/4:24023919* | intergenic | (0.14, 0.022, P = 4.8e-05, N = 7824) | (0.13, 0.11, P = 0.13, N = 859) |
rs9790569(T)/4:46734416* | COX7B2 | (0.18, -0.2, P = 9.3e-06, N = 1950) | (0.14, -0.096, P = 0.17, N = 859) |
rs6848595(A)/4:66601246* | intergenic | (0.8, 0.021, P = 2.4e-05, N = 7824) | (0.86, -0.015, P = 0.83, N = 859) |
rs17157494(A)/5:104409021* | CTD-2374C24.1 | (0.074, 0.035, P = 2.2e-06, N = 7824) | (0.03, -0.16, P = 0.25, N = 859) |
rs10036208(T)/5:131571323* | P4HA2 | (0.34, 0.02, P = 1.5e-06, N = 7824) | (0.22, 0.038, P = 0.51, N = 859) |
rs1392171(A)/5:135631449* | TRPC7 | (0.89, 0.024, P = 3.5e-05, N = 7824) | (0.87, -0.0074, P = 0.92, N = 859) |
rs371846(T)/5:142188049* | ARHGAP26 | (0.083, -0.03, P = 4.2e-05, N = 7824) | (0.25, -0.019, P = 0.73, N = 859) |
rs447983(G)/5:155986075* | SGCD | (0.18, 0.22, P = 9.8e-06, N = 1950) | (0.42, -0.0042, P = 0.93, N = 859) |
rs2042990(A)/5:66232373* | MAST4 | (0.039, -0.04, P = 4.8e-05, N = 7824) | (0.019, -0.25, P = 0.17, N = 859) |
rs13195853(T)/6:165808391* | PDE10A | (0.65, 0.018, P = 1.9e-05, N = 7824) | (0.85, 0.039, P = 0.57, N = 859) |
rs4711830(T)/6:45810500* | intergenic | (0.13, 0.2, P = 6.1e-06, N = 1950) | (0.098, -0.058, P = 0.48, N = 859) |
rs9352088(C)/6:74987577* | RP11-554D15.1 | (0.75, -0.038, P = 3.1e-05, N = 7824) | (0.56, 0.036, P = 0.46, N = 859) |
rs7795715(A)/7:154639804* | DPP6 | (0.86, -0.025, P = 1.2e-05, N = 7824) | (0.82, -0.03, P = 0.64, N = 859) |
rs7789113(A)/7:52525621* | intergenic | (0.37, 0.017, P = 3.1e-05, N = 7824) | (0.81, 0.081, P = 0.19, N = 859) |
rs7800456(T)/7:81904348* | CACNA2D1 | (0.29, 0.018, P = 2.5e-05, N = 7824) | (0.28, 0.063, P = 0.25, N = 859) |
rs6958779(A)/7:92996871 | intergenic | (0.59, -0.017, P = 4.1e-05, N = 7824) | (0.68, -0.016, P = 0.76, N = 859) |
rs7819483(A)/8:144351394* | GLI4 | (0.72, -0.019, P = 7.5e-06, N = 7824) | (0.46, -0.013, P = 0.79, N = 859) |
rs7462737(T)/8:17615456* | MTUS1 | (0.17, -0.021, P = 1.9e-05, N = 7824) | (0.26, -0.055, P = 0.31, N = 859) |
rs3824142(A)/8:1947938* | KBTBD11 | (0.12, -0.025, P = 4.7e-05, N = 7824) | (0.38, 0.006, P = 0.9, N = 859) |
rs10504255(A)/8:59398461* | CYP7A1 | (0.65, 0.017, P = 4.1e-05, N = 7824) | (0.93, -0.064, P = 0.49, N = 859) |
rs7833895(A)/8:9989417* | MSRA | (0.93, 0.033, P = 1.5e-05, N = 7824) | (0.83, -0.021, P = 0.75, N = 859) |
rs9556(T)/9:102732237* | STX17 | (0.31, -0.019, P = 6.1e-06, N = 7824) | (0.27, 0.013, P = 0.81, N = 859) |
rs6475272(T)/9:18949249* | FAM154A | (0.23, -0.024, P = 9.1e-07, N = 7824) | (0.067, 0.0017, P = 0.99, N = 859) |
rs1556099(A)/9:7164502* | KDM4C | (0.75, 0.019, P = 1.8e-05, N = 7824) | (0.85, 0.1, P = 0.14, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 78 | -0.08 (-0.22- 0.06) P=0.26 | 7.9 | 27 | 9.62 (0- 60.2) | NA | NA | -0.0027 P=0.79 |
MR-Egger | 78 | -0.062 (-0.25- 0.13) P=0.52 | 7.9 | 27 | 9.62 (0- 60.2) | 80 | 0.35 | -0.0027 P=0.79 |
Weighted median | 78 | -0.059 (-0.28- 0.17) P=0.61 | 7.9 | 27 | 9.62 (0- 60.2) | NA | NA | -0.0027 P=0.79 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.08 | 0.07 | -1.12 | 0.27 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 8 | -0.34 (-0.74- 0.052) P=0.089 | 17 | 6.2 | 14 (0- 97.6) | NA | NA | 0.0023 P=0.95 |
MR-Egger | 8 | -0.35 (-0.92- 0.22) P=0.27 | 17 | 6.2 | 14 (0- 97.6) | 7.9 | 0.25 | 0.0023 P=0.95 |
Weighted median | 8 | -0.45 (-0.92- 0.028) P=0.065 | 17 | 6.2 | 14 (0- 97.6) | NA | NA | 0.0023 P=0.95 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.34 | 0.2 | -1.7 | 0.13 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Dodecanoylcarnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs2154184(T)/1:111432037* | CD53 | (0.19, 0.22, P = 4.7e-06, N = 1955) | (0.056, -0.032, P = 0.75, N = 859) |
rs332765(T)/1:174655782* | RABGAP1L | (0.36, 0.13, P = 2.4e-06, N = 1955) | (0.9, -0.075, P = 0.34, N = 859) |
rs1408421(A)/1:17754767* | RCC2 | (0.36, 0.034, P = 4.8e-05, N = 7824) | (0.24, -0.095, P = 0.091, N = 859) |
rs736713(T)/1:19689279* | CAPZB | (0.047, -0.047, P = 2.4e-05, N = 7824) | (0.34, 0.015, P = 0.77, N = 859) |
rs12087648(T)/1:198488490* | ATP6V1G3 | (0.87, 0.029, P = 3.8e-05, N = 7824) | (0.72, -0.05, P = 0.36, N = 859) |
rs12081432(T)/1:224413515 | NVL | (0.33, -0.12, P = 1.8e-06, N = 1955) | (0.32, 0.069, P = 0.19, N = 859) |
rs66713312(T)/1:236526499* | EDARADD | (0.24, 0.13, P = 4.3e-06, N = 1955) | (0.42, 0.036, P = 0.46, N = 859) |
rs316841(T)/1:242322654* | PLD5 | (0.38, 0.033, P = 4.9e-05, N = 7824) | (0.68, 0.0044, P = 0.93, N = 859) |
rs7894167(C)/10:47556919* | intergenic | (0.38, 0.17, P = 3.8e-06, N = 1955) | (0.52, 0.1, P = 0.037, N = 859) |
rs12218054(T)/10:49801239* | ARHGAP22 | (0.22, -0.025, P = 1.4e-05, N = 7824) | (0.19, 0.042, P = 0.49, N = 859) |
rs7902782(T)/10:8777109* | intergenic | (0.16, -0.028, P = 3.9e-05, N = 7824) | (0.22, -0.07, P = 0.22, N = 859) |
rs4937603(T)/11:131022116* | intergenic | (0.43, 0.13, P = 1.6e-06, N = 1955) | (0.3, 0.017, P = 0.75, N = 859) |
rs10766637(A)/11:20245859* | intergenic | (0.53, -0.034, P = 3e-05, N = 7824) | (0.21, 0.097, P = 0.11, N = 859) |
rs9144(T)/11:87846757* | RAB38 | (0.59, -0.02, P = 4.7e-05, N = 7824) | (0.84, -0.049, P = 0.46, N = 859) |
rs10842869(A)/12:27335914* | intergenic | (0.44, -0.16, P = 2.8e-06, N = 1955) | (0.61, -0.036, P = 0.48, N = 859) |
rs75605489(C)/12:4342877 | intergenic | (0.061, -0.3, P = 9.7e-06, N = 1955) | (0.16, 0.085, P = 0.19, N = 859) |
rs11180195(A)/12:75144208* | intergenic | (0.011, 0.17, P = 8.6e-06, N = 7824) | (0.04, -0.013, P = 0.92, N = 859) |
rs2263942(A)/12:82420006* | intergenic | (0.97, 0.45, P = 1.1e-06, N = 1955) | (0.66, 0.035, P = 0.49, N = 859) |
rs4900991(C)/14:50618737* | SOS2 | (0.6, 0.021, P = 9.9e-06, N = 7824) | (0.89, 0.04, P = 0.61, N = 859) |
rs7162018(A)/15:39365195* | RP11-624L4.1 | (0.49, -0.022, P = 4.5e-06, N = 7824) | (0.21, 0.011, P = 0.85, N = 859) |
rs12902624(C)/15:82533236* | EFTUD1 | (0.88, 0.033, P = 4.3e-06, N = 7824) | (0.98, -0.53, P = 0.0052, N = 859) |
rs193537(C)/16:16135043* | ABCC1 | (0.3, -0.24, P = 1.8e-09, N = 1955) | (0.66, -0.019, P = 0.71, N = 859) |
rs16966673(T)/16:63897984* | intergenic | (0.026, 0.12, P = 7.9e-06, N = 7824) | (0.11, 0.01, P = 0.9, N = 859) |
rs10492879(T)/16:8432142* | intergenic | (0.94, -0.042, P = 1.8e-05, N = 7824) | (0.89, -0.071, P = 0.36, N = 859) |
rs12928583(A)/16:84961276* | RP11-254F19.3 | (0.54, 0.024, P = 9e-06, N = 7824) | (0.25, 0.02, P = 0.71, N = 859) |
rs2546027(T)/19:35454215* | ZNF792 | (0.54, 0.026, P = 4.1e-05, N = 7824) | (0.65, 0.019, P = 0.71, N = 859) |
rs1003470(C)/19:36602729* | TBCB | (0.45, 0.023, P = 1.2e-06, N = 7824) | (0.3, 0.043, P = 0.41, N = 859) |
rs346052(A)/19:44205082* | intergenic | (0.094, -0.16, P = 1.1e-06, N = 1955) | (0.16, -0.03, P = 0.64, N = 859) |
rs1982669(T)/2:120539339* | PTPN4 | (0.27, 0.02, P = 4.9e-05, N = 7824) | (0.28, -0.028, P = 0.6, N = 859) |
rs843200(C)/2:156424356 | intergenic | (0.54, -0.13, P = 8.9e-06, N = 1955) | (0.46, 0.056, P = 0.23, N = 859) |
rs764741(A)/2:158089779 | intergenic | (0.19, -0.27, P = 7.5e-06, N = 1955) | (0.092, -0.054, P = 0.51, N = 859) |
rs10198528(A)/2:159358192* | PKP4 | (0.58, 0.033, P = 3.1e-05, N = 7824) | (0.75, 0.086, P = 0.12, N = 859) |
rs1465827(T)/2:212090820* | intergenic | (0.91, 0.033, P = 3.6e-05, N = 7824) | (0.95, -0.047, P = 0.67, N = 859) |
rs2970899(T)/2:88421845* | FABP1 | (0.77, 0.024, P = 2.3e-05, N = 7824) | (0.9, -0.073, P = 0.37, N = 859) |
rs68088277(T)/20:16262002 | KIF16B | (0.019, 0.61, P = 7.5e-06, N = 1955) | (0.1, 0.082, P = 0.31, N = 859) |
rs73110340(G)/20:16262599 | KIF16B | (0.019, 0.61, P = 6.4e-06, N = 1955) | (0.09, -0.0077, P = 0.93, N = 859) |
rs4140469(A)/20:7152241 | RP4-764O22.2 | (0.76, -0.025, P = 9e-06, N = 7824) | (0.97, 0.046, P = 0.73, N = 859) |
rs2298565(C)/21:45643396* | ICOSLG | (0.55, 0.02, P = 2.4e-05, N = 7824) | (0.68, 0.0037, P = 0.94, N = 859) |
rs5755595(T)/22:35518839* | CTA-714B7.5 | (0.27, 0.24, P = 3.3e-06, N = 1955) | (0.055, 0.1, P = 0.35, N = 859) |
rs7631807(G)/3:104939338 | intergenic | (0.76, -0.21, P = 8.8e-06, N = 1955) | (0.55, -0.098, P = 0.045, N = 859) |
rs9880529(T)/3:176409064* | RP11-644C3.1 | (0.87, 0.033, P = 3.8e-06, N = 7824) | (0.8, 0.035, P = 0.56, N = 859) |
rs11927179(A)/3:68816377* | FAM19A4 | (0.064, -0.042, P = 1e-05, N = 7824) | (0.15, -0.0077, P = 0.91, N = 859) |
rs9852502(T)/3:88896473* | intergenic | (0.62, -0.26, P = 7.9e-06, N = 1955) | (0.5, 0.02, P = 0.68, N = 859) |
rs4352478(A)/4:104212131 | RP11-328K4.1 | (0.22, 0.024, P = 1.9e-05, N = 7824) | (0.52, 0.0096, P = 0.84, N = 859) |
rs2162399(T)/4:119822626 | SYNPO2 | (0.19, 0.044, P = 3.8e-05, N = 7824) | (0.36, -0.034, P = 0.5, N = 859) |
rs1353305(A)/4:124326814* | SPRY1 | (0.97, -0.1, P = 4.9e-05, N = 7824) | (0.82, 0.045, P = 0.47, N = 859) |
rs10002155(A)/4:15916508 | intergenic | (0.27, -0.18, P = 3.2e-06, N = 1955) | (0.32, -0.0014, P = 0.98, N = 859) |
rs4690909(C)/4:159629151* | ETFDH | (0.69, 0.03, P = 1.1e-09, N = 7824) | (0.14, 0.012, P = 0.86, N = 859) |
rs35189787(T)/4:159802267* | FNIP2 | (0.21, -0.29, P = 5.3e-10, N = 1955) | (0.077, 0.091, P = 0.31, N = 859) |
rs62306589(T)/4:56058510 | intergenic | (0.29, 0.16, P = 4.5e-06, N = 1955) | (0.04, 0.093, P = 0.46, N = 859) |
rs2535502(T)/4:58195220* | intergenic | (0.61, -0.021, P = 2.5e-05, N = 7824) | (0.66, 0.13, P = 0.009, N = 859) |
rs6834160(A)/4:68030397* | intergenic | (0.98, 0.065, P = 4.6e-05, N = 7824) | (0.97, -0.22, P = 0.12, N = 859) |
rs2119420(A)/4:80437117* | LINC00989 | (0.24, 0.024, P = 2e-05, N = 7824) | (0.53, -0.068, P = 0.16, N = 859) |
rs4836309(T)/5:126454090* | intergenic | (0.54, -0.022, P = 2.4e-06, N = 7824) | (0.5, -0.074, P = 0.13, N = 859) |
rs274559(A)/5:131720070* | SLC22A5 | (0.62, -0.023, P = 1.5e-06, N = 7824) | (0.62, 0.0015, P = 0.98, N = 859) |
rs447983(G)/5:155986075* | SGCD | (0.18, 0.22, P = 9.8e-06, N = 1955) | (0.42, -0.0042, P = 0.93, N = 859) |
rs7728965(T)/5:4231293* | intergenic | (0.23, 0.024, P = 3.9e-05, N = 7824) | (0.28, 0.025, P = 0.64, N = 859) |
rs4711830(T)/6:45810500* | intergenic | (0.13, 0.2, P = 6.1e-06, N = 1955) | (0.098, -0.058, P = 0.48, N = 859) |
rs1454715(A)/6:68827238* | intergenic | (0.22, 0.024, P = 2e-05, N = 7824) | (0.45, 0.067, P = 0.18, N = 859) |
rs943087(T)/6:76754976* | IMPG1 | (0.17, 0.031, P = 1.4e-06, N = 7824) | (0.2, -0.063, P = 0.29, N = 859) |
rs3815553(T)/7:104535572* | LHFPL3 | (0.47, -0.022, P = 4.1e-05, N = 7824) | (0.74, 0.045, P = 0.41, N = 859) |
rs73231995(T)/7:123940656 | RP5-921G16.1 | (0.12, -0.22, P = 9.7e-06, N = 1955) | (0.012, 0.056, P = 0.8, N = 859) |
rs1385234(A)/8:96681968* | KB-1047C11.2 | (0.32, 0.022, P = 7e-06, N = 7824) | (0.39, 0.068, P = 0.18, N = 859) |
rs10979297(A)/9:111024683* | intergenic | (0.67, -0.023, P = 6.9e-06, N = 7824) | (0.92, -0.1, P = 0.28, N = 859) |
rs10819159(C)/9:129208748 | MVB12B | (0.18, 0.2, P = 6.6e-06, N = 1955) | (0.1, 0.085, P = 0.28, N = 859) |
rs3860894(A)/9:84007235* | intergenic | (0.47, 0.021, P = 4e-05, N = 7824) | (0.53, -0.032, P = 0.5, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 66 | 0.045 (-0.05- 0.14) P=0.35 | 12 | 36 | 0.00418 (0- 74.5) | NA | NA | -0.0066 P=0.5 |
MR-Egger | 66 | 0.073 (-0.053- 0.2) P=0.26 | 12 | 36 | 0.00418 (0- 74.5) | 65 | 0.43 | -0.0066 P=0.5 |
Weighted median | 66 | 0.067 (-0.072- 0.21) P=0.34 | 12 | 36 | 0.00418 (0- 74.5) | NA | NA | -0.0066 P=0.5 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.05 | 0.05 | 0.93 | 0.36 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 14 | 0.045 (-0.093- 0.18) P=0.52 | 20 | 14 | 9.75 (0- 64.5) | NA | NA | -0.021 P=0.45 |
MR-Egger | 14 | 0.11 (-0.11- 0.33) P=0.34 | 20 | 14 | 9.75 (0- 64.5) | 12 | 0.47 | -0.021 P=0.45 |
Weighted median | 14 | 0.022 (-0.18- 0.22) P=0.83 | 20 | 14 | 9.75 (0- 64.5) | NA | NA | -0.021 P=0.45 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.04 | 0.07 | 0.64 | 0.53 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-Acetylcarnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs1281021(T)/1:11006668* | C1orf127 | (0.04, 0.048, P = 4.7e-05, N = 7824) | (0.42, -0.091, P = 0.062, N = 859) |
rs703116(A)/1:158644105* | SPTA1 | (0.43, -0.019, P = 5e-05, N = 7824) | (0.12, -0.078, P = 0.29, N = 859) |
rs16852535(A)/1:230881658* | CAPN9 | (0.32, 0.011, P = 2e-05, N = 7824) | (0.54, -0.079, P = 0.11, N = 859) |
rs2764907(C)/1:59356872* | RP4-794H19.1 | (0.086, 0.019, P = 1e-05, N = 7824) | (0.015, -0.033, P = 0.87, N = 859) |
rs1359850(A)/10:129785336* | PTPRE | (0.88, 0.015, P = 3e-05, N = 7824) | (0.98, 0.11, P = 0.52, N = 859) |
rs12268890(T)/10:45803909* | OR13A1 | (0.11, -0.015, P = 4.6e-05, N = 7824) | (0.39, 0.025, P = 0.61, N = 859) |
rs2242206(T)/10:61414011* | SLC16A9 | (0.26, 0.013, P = 1e-06, N = 7824) | (0.09, 0.076, P = 0.36, N = 859) |
rs1171614(T)/10:61469538* | SLC16A9 | (0.22, -0.028, P = 3.4e-23, N = 7824) | (0.24, -0.02, P = 0.73, N = 859) |
rs624016(A)/10:6486611 | PRKCQ | (0.34, -0.27, P = 8.2e-06, N = 1910) | (0.44, -0.021, P = 0.66, N = 859) |
rs6583751(C)/10:92838776* | intergenic | (0.6, -0.012, P = 3.6e-06, N = 7824) | (0.49, 0.027, P = 0.58, N = 859) |
rs2155639(T)/11:115492672* | intergenic | (0.34, -0.023, P = 1.3e-05, N = 7824) | (0.29, -0.083, P = 0.11, N = 859) |
rs493384(A)/11:122114071 | RP11-820L6.1 | (0.012, -0.091, P = 4.9e-05, N = 7824) | (0.073, 0.033, P = 0.72, N = 859) |
rs17831757(T)/11:61635200* | FADS2 | (0.9, -0.015, P = 1.9e-05, N = 7824) | (0.95, -0.029, P = 0.78, N = 859) |
rs10847395(A)/12:128007217* | intergenic | (0.48, -0.008, P = 2e-05, N = 7824) | (0.85, 0.013, P = 0.84, N = 859) |
rs11052231(A)/12:32931618 | intergenic | (0.046, -0.021, P = 4.4e-05, N = 7824) | (0.18, -0.074, P = 0.21, N = 859) |
rs2263487(T)/12:47250827* | intergenic | (0.52, -0.0077, P = 2.8e-05, N = 7824) | (0.19, -0.01, P = 0.87, N = 859) |
rs10735937(T)/12:67053882* | GRIP1 | (0.16, -0.015, P = 8e-06, N = 7824) | (0.078, 0.2, P = 0.027, N = 859) |
rs7332276(T)/13:107886865* | FAM155A | (0.47, -0.018, P = 3.1e-06, N = 7824) | (0.23, 0.097, P = 0.089, N = 859) |
rs975508(A)/13:26565586* | ATP8A2 | (0.55, -0.0081, P = 1.1e-05, N = 7824) | (0.59, -0.019, P = 0.7, N = 859) |
rs2239265(T)/14:72513858 | RGS6 | (0.36, -0.79, P = 5.6e-06, N = 1910) | (0.48, -0.011, P = 0.82, N = 859) |
rs10139470(T)/14:92150089* | CATSPERB | (0.25, -0.011, P = 3.9e-05, N = 7824) | (0.23, 0.012, P = 0.82, N = 859) |
rs2121212(T)/15:102073092* | intergenic | (0.84, -0.013, P = 1.5e-05, N = 7824) | (0.63, 0.024, P = 0.64, N = 859) |
rs2617228(T)/15:48991807 | intergenic | (0.76, 0.17, P = 1.2e-06, N = 1910) | (0.71, -0.063, P = 0.22, N = 859) |
rs8039391(A)/15:97234378* | intergenic | (0.16, -0.012, P = 1.4e-05, N = 7824) | (0.15, -0.0074, P = 0.91, N = 859) |
rs197055(A)/16:1131175 | SSTR5 | (0.17, 0.32, P = 5.2e-06, N = 1910) | (0.024, 0.034, P = 0.83, N = 859) |
rs9926669(A)/16:24318302 | CACNG3 | (0.2, 0.011, P = 2.6e-05, N = 7824) | (0.45, 0.052, P = 0.28, N = 859) |
rs8072316(T)/17:2785024 | RAP1GAP2 | (0.56, -0.013, P = 1.4e-05, N = 7824) | (0.73, -0.0073, P = 0.89, N = 859) |
rs60232438(A)/18:12003859 | IMPA2 | (0.15, 0.32, P = 9.2e-06, N = 1910) | (0.17, -0.017, P = 0.79, N = 859) |
rs1367865(C)/18:49961055 | DCC | (0.85, -0.25, P = 9.5e-06, N = 1910) | (0.94, -0.073, P = 0.49, N = 859) |
rs17077300(A)/18:65087840* | intergenic | (0.91, -0.014, P = 4.8e-05, N = 7824) | (0.95, 0.17, P = 0.14, N = 859) |
rs1401926(T)/19:21740932 | RP11-678G14.2 | (0.47, 0.0078, P = 2e-05, N = 7824) | (0.5, 0.061, P = 0.2, N = 859) |
rs34810593(G)/19:21825360 | RP11-420K14.1 | (0.68, -0.58, P = 5.8e-06, N = 1910) | (0.33, 0.13, P = 0.011, N = 859) |
rs2228070(T)/19:38956839* | RYR1 | (0.23, 0.012, P = 8.2e-06, N = 7824) | (0.087, 0.16, P = 0.06, N = 859) |
rs61003828(C)/19:4837150 | PLIN3 | (0.13, 0.23, P = 7.2e-06, N = 1910) | (0.1, -0.074, P = 0.35, N = 859) |
rs12971535(C)/19:51069278 | LRRC4B | (0.86, 0.25, P = 3.1e-06, N = 1910) | (0.65, -0.042, P = 0.41, N = 859) |
rs12462064(T)/19:53628653* | ZNF415 | (0.98, 0.064, P = 1.3e-05, N = 7824) | (0.95, -0.16, P = 0.14, N = 859) |
rs922920(A)/2:111695479* | ACOXL | (0.52, -0.0078, P = 2.5e-05, N = 7824) | (0.32, -0.013, P = 0.8, N = 859) |
rs2214270(T)/2:130336029 | intergenic | (0.45, 0.008, P = 1.3e-05, N = 7824) | (0.36, -0.00081, P = 0.99, N = 859) |
rs10194807(C)/2:171051041 | MYO3B | (0.39, 0.16, P = 1.5e-06, N = 1910) | (0.62, 0.035, P = 0.48, N = 859) |
rs34326128(T)/2:177202822* | MTX2 | (0.076, -0.37, P = 2.8e-07, N = 1910) | (0.015, 0.19, P = 0.34, N = 859) |
rs7579950(A)/2:200707606* | FTCDNL1 | (0.046, -0.065, P = 4.6e-06, N = 7824) | (0.067, -0.036, P = 0.71, N = 859) |
rs10164712(A)/2:218152840* | AC009492.1 | (0.21, -0.011, P = 3.7e-05, N = 7824) | (0.23, 0.028, P = 0.63, N = 859) |
rs11686145(T)/2:233121360* | DIS3L2 | (0.023, -0.032, P = 2.5e-05, N = 7824) | (0.12, -0.062, P = 0.42, N = 859) |
rs10210645(A)/2:237872402 | intergenic | (0.095, 0.17, P = 4.4e-06, N = 1910) | (0.22, 0.035, P = 0.53, N = 859) |
rs195592(T)/2:53488034* | intergenic | (0.82, -0.024, P = 4.8e-05, N = 7824) | (0.88, -0.053, P = 0.48, N = 859) |
rs12615875(A)/2:73081791* | intergenic | (0.17, -0.012, P = 6.2e-06, N = 7824) | (0.53, 0.088, P = 0.061, N = 859) |
rs6080491(T)/20:16900236* | intergenic | (0.17, -0.011, P = 1.8e-05, N = 7824) | (0.03, 0.11, P = 0.43, N = 859) |
rs2205690(G)/20:38688310 | intergenic | (0.95, -0.23, P = 2.4e-06, N = 1910) | (0.74, -0.083, P = 0.13, N = 859) |
rs6126825(A)/20:51999923* | TSHZ2 | (0.83, -0.011, P = 3.1e-05, N = 7824) | (0.76, 0.01, P = 0.86, N = 859) |
rs11698080(T)/20:60899182* | LAMA5 | (0.2, 0.011, P = 4e-05, N = 7824) | (0.26, -0.12, P = 0.038, N = 859) |
rs4578928(T)/20:7210072 | RP4-764O22.2 | (0.49, 0.31, P = 5e-06, N = 1910) | (0.39, -0.099, P = 0.046, N = 859) |
rs3773721(C)/3:122445778* | PARP14 | (0.099, 0.3, P = 6.6e-06, N = 1910) | (0.049, 0.013, P = 0.91, N = 859) |
rs1348656(T)/3:144933520* | intergenic | (0.8, -0.012, P = 6.5e-06, N = 7824) | (0.61, 0.03, P = 0.56, N = 859) |
rs9289719(T)/3:145983688* | intergenic | (0.81, 0.012, P = 7.4e-06, N = 7824) | (0.41, 0.015, P = 0.76, N = 859) |
rs9818568(G)/3:150300051 | EIF2A | (0.49, -0.13, P = 9.6e-06, N = 1910) | (0.4, -0.032, P = 0.51, N = 859) |
rs7665423(A)/4:10520600 | CLNK | (0.014, 0.083, P = 4e-05, N = 7824) | (0.04, 0.013, P = 0.92, N = 859) |
rs12506472(G)/4:124906097 | intergenic | (0.22, 0.31, P = 8.7e-06, N = 1910) | (0.21, 8e-04, P = 0.99, N = 859) |
rs3214037(A)/4:128688803* | SLC25A31 | (0.014, -0.037, P = 4e-05, N = 7824) | (0.023, 0.16, P = 0.32, N = 859) |
rs7688971(A)/4:145076356* | intergenic | (0.016, 0.073, P = 4.1e-05, N = 7824) | (0.092, -0.016, P = 0.85, N = 859) |
rs12510399(T)/4:157216074* | AC108211.1 | (0.13, -0.014, P = 3.8e-05, N = 7824) | (0.065, 0.081, P = 0.4, N = 859) |
rs78509047(G)/4:181215706* | intergenic | (0.019, 0.87, P = 7.4e-06, N = 1910) | (0.14, 0.078, P = 0.27, N = 859) |
rs6810706(A)/4:18750217* | intergenic | (0.55, 0.022, P = 5.4e-06, N = 7824) | (0.38, -0.021, P = 0.67, N = 859) |
rs2920179(C)/4:4216951* | OTOP1 | (0.21, 0.011, P = 3.8e-05, N = 7824) | (0.077, -0.091, P = 0.31, N = 859) |
rs35379510(A)/4:86384715* | intergenic | (0.029, -0.058, P = 2.2e-05, N = 7824) | (0.21, 0.077, P = 0.19, N = 859) |
rs17132827(T)/5:110489279* | AC010468.3 | (0.91, 0.015, P = 2.1e-05, N = 7824) | (0.9, -0.058, P = 0.45, N = 859) |
rs10037469(T)/5:130451873* | intergenic | (0.97, 0.03, P = 6e-07, N = 7824) | (0.73, 0.05, P = 0.37, N = 859) |
rs7356708(C)/5:130593723 | CDC42SE2 | (0.038, -0.024, P = 4.2e-05, N = 7824) | (0.6, -0.031, P = 0.53, N = 859) |
rs7716905(A)/5:131324377* | ACSL6 | (0.97, 0.032, P = 1.5e-07, N = 7824) | (0.59, -0.046, P = 0.34, N = 859) |
rs7705189(A)/5:131623358* | P4HA2 | (0.51, 0.01, P = 3.9e-05, N = 7824) | (0.72, -0.13, P = 0.015, N = 859) |
rs274567(T)/5:131714409* | SLC22A5 | (0.37, 0.018, P = 2.8e-12, N = 7824) | (0.3, 0.049, P = 0.35, N = 859) |
rs964922(A)/5:144943893* | PRELID2 | (0.046, -0.12, P = 2.2e-06, N = 1910) | (0.078, 0.054, P = 0.56, N = 859) |
rs17080396(A)/5:180005634* | CNOT6 | (0.94, -0.018, P = 4.4e-05, N = 7824) | (0.9, -0.0076, P = 0.93, N = 859) |
rs13184373(T)/5:30721169* | intergenic | (0.15, -0.012, P = 6.4e-06, N = 7824) | (0.17, -0.013, P = 0.84, N = 859) |
rs7734716(T)/5:53707175* | LINC01033 | (0.23, 0.023, P = 1.7e-05, N = 7824) | (0.2, -0.13, P = 0.026, N = 859) |
rs10066016(G)/5:86197530 | intergenic | (0.72, 0.32, P = 1.7e-06, N = 1910) | (0.55, 0.088, P = 0.065, N = 859) |
rs9385645(A)/6:133694314* | EYA4 | (0.84, 0.011, P = 3.3e-05, N = 7824) | (0.78, -0.013, P = 0.83, N = 859) |
rs6570549(A)/6:143466564* | AIG1 | (0.72, -0.011, P = 1.1e-05, N = 7824) | (0.95, 0.078, P = 0.49, N = 859) |
rs662138(C)/6:160564476* | SLC22A1 | (0.83, 0.014, P = 2.9e-07, N = 7824) | (0.95, 0.099, P = 0.35, N = 859) |
rs9348257(A)/6:170442668* | intergenic | (0.26, 0.012, P = 2.7e-06, N = 7824) | (0.076, -0.049, P = 0.59, N = 859) |
rs1655902(A)/6:29916855* | HLA-A | (0.82, -0.029, P = 1.3e-06, N = 7824) | (0.77, -0.013, P = 0.82, N = 859) |
rs1885674(T)/6:71999404* | OGFRL1 | (0.76, 0.011, P = 3.4e-05, N = 7824) | (0.8, 0.13, P = 0.024, N = 859) |
rs9447587(T)/6:76720204* | IMPG1 | (0.15, 0.015, P = 3.6e-05, N = 7824) | (0.17, -0.01, P = 0.87, N = 859) |
rs12154346(A)/7:33543638* | BBS9 | (0.9, 0.015, P = 2e-05, N = 7824) | (0.83, -0.039, P = 0.55, N = 859) |
rs17461606(T)/8:101876369* | intergenic | (0.16, -0.14, P = 3.6e-06, N = 1910) | (0.021, -0.099, P = 0.56, N = 859) |
rs17065805(T)/8:1150705* | CTD-2281E23.2 | (0.94, -0.022, P = 8.2e-06, N = 7824) | (0.89, -0.027, P = 0.72, N = 859) |
rs16904912(T)/8:134400251* | CTC-369M3.1 | (0.2, 0.025, P = 1.5e-05, N = 7824) | (0.12, -0.0034, P = 0.96, N = 859) |
rs4976950(A)/8:143297145* | TSNARE1 | (0.03, -0.068, P = 3.7e-06, N = 7824) | (0.17, 0.013, P = 0.84, N = 859) |
rs13257229(T)/8:21028044* | intergenic | (0.24, 0.021, P = 9.9e-06, N = 7824) | (0.064, -0.07, P = 0.47, N = 859) |
rs1545087(A)/8:23622382* | RP11-175E9.1 | (0.22, 0.011, P = 1.8e-05, N = 7824) | (0.33, -0.01, P = 0.84, N = 859) |
rs16895268(T)/8:98169720* | intergenic | (0.18, -0.011, P = 2.8e-05, N = 7824) | (0.51, 0.0094, P = 0.84, N = 859) |
rs10989419(T)/9:103934113* | LPPR1 | (0.19, 0.013, P = 3.8e-06, N = 7824) | (0.1, -0.051, P = 0.54, N = 859) |
rs7044502(A)/9:12481665 | intergenic | (0.23, -0.19, P = 8e-06, N = 1910) | (0.27, 0.012, P = 0.82, N = 859) |
rs11999015(C)/9:26942716 | PLAA | (0.076, 0.24, P = 4.6e-07, N = 1910) | (0.17, 0.074, P = 0.26, N = 859) |
rs1585956(T)/9:31371352* | RP11-271O3.1 | (0.49, 0.17, P = 7.2e-06, N = 1910) | (0.66, 0.017, P = 0.73, N = 859) |
rs2039787(T)/9:71875458* | intergenic | (0.18, 0.011, P = 4.5e-05, N = 7824) | (0.032, -0.029, P = 0.83, N = 859) |
rs4087415(C)/9:73785818* | TRPM3 | (0.98, 0.29, P = 8.7e-06, N = 1910) | (0.91, 0.072, P = 0.4, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 96 | -0.0073 (-0.074- 0.06) P=0.83 | 20 | 84 | 8.4 (0- 75.6) | NA | NA | -0.0095 P=0.21 |
MR-Egger | 96 | 0.019 (-0.059- 0.096) P=0.64 | 20 | 84 | 8.4 (0- 75.6) | 95 | 0.44 | -0.0095 P=0.21 |
Weighted median | 96 | 0.026 (-0.093- 0.15) P=0.67 | 20 | 84 | 8.4 (0- 75.6) | NA | NA | -0.0095 P=0.21 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.01 | 0.03 | -0.21 | 0.83 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 26 | -0.023 (-0.1- 0.056) P=0.57 | 66 | 75 | 26 (0- 54) | NA | NA | 0.032 P=0.065 |
MR-Egger | 26 | -0.1 (-0.22- 0.0076) P=0.08 | 66 | 75 | 26 (0- 54) | 24 | 0.49 | 0.032 P=0.065 |
Weighted median | 26 | 0.012 (-0.11- 0.14) P=0.85 | 66 | 75 | 26 (0- 54) | NA | NA | 0.032 P=0.065 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.02 | 0.04 | -0.56 | 0.58 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Butyrylcarnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs71628219(T)/1:176928724 | ASTN1 | (0.042, 1.1, P = 6.3e-06, N = 1909) | (0.013, 0.35, P = 0.086, N = 859) |
rs1762470(T)/1:208423850* | RP11-2P2.1 | (0.55, 0.018, P = 4.7e-07, N = 7824) | (0.81, 0.022, P = 0.72, N = 859) |
rs7552486(C)/1:232645738 | SIPA1L2 | (0.94, 1, P = 5e-06, N = 1909) | (0.98, -0.043, P = 0.82, N = 859) |
rs3120706(T)/1:246714022* | TFB2M | (0.99, 1.3, P = 1.9e-07, N = 1909) | (0.96, -0.008, P = 0.95, N = 859) |
rs2201453(A)/1:80040353* | intergenic | (0.44, 0.015, P = 3.7e-05, N = 7824) | (0.67, 0.058, P = 0.26, N = 859) |
rs2804412(A)/10:101522647* | intergenic | (0.12, 0.62, P = 6.9e-07, N = 1909) | (0.025, -0.081, P = 0.61, N = 859) |
rs2242206(T)/10:61414011* | SLC16A9 | (0.26, 0.018, P = 3.5e-05, N = 7824) | (0.09, 0.076, P = 0.36, N = 859) |
rs1171615(T)/10:61469090* | SLC16A9 | (0.78, 0.035, P = 6.8e-14, N = 7824) | (0.76, 0.02, P = 0.73, N = 859) |
rs10997368(A)/10:68485405* | CTNNA3 | (0.42, -0.015, P = 2.9e-05, N = 7824) | (0.32, 0.028, P = 0.58, N = 859) |
rs2595414(A)/11:6918410 | OR2D2 | (0.83, -0.37, P = 4.6e-06, N = 1909) | (0.55, -0.011, P = 0.82, N = 859) |
rs2996029(C)/12:120165182* | CIT | (0.48, -0.017, P = 4.2e-05, N = 7824) | (0.52, -0.1, P = 0.039, N = 859) |
rs11611311(A)/12:120677587* | PXN | (0.86, 0.046, P = 1.6e-15, N = 7824) | (0.86, 0.035, P = 0.61, N = 859) |
rs2076022(T)/12:120875790* | COX6A1 | (0.39, -0.05, P = 4.2e-33, N = 7824) | (0.46, -0.022, P = 0.64, N = 859) |
rs1168067(T)/12:121082469* | CABP1 | (0.44, -0.081, P = 9.5e-87, N = 7824) | (0.21, -0.013, P = 0.83, N = 859) |
rs503667(A)/12:121088750* | CABP1 | (0.3, 0.054, P = 4.7e-36, N = 7824) | (0.29, 0.0067, P = 0.9, N = 859) |
rs10849776(A)/12:121110235* | intergenic | (0.37, -0.34, P = 1.3e-41, N = 1909) | (0.68, 0.062, P = 0.23, N = 859) |
rs10431384(A)/12:121127347* | MLEC | (0.68, -0.17, P = 1e-200, N = 7824) | (0.65, -0.0093, P = 0.85, N = 859) |
rs525425(A)/12:121195625* | SPPL3 | (0.52, -0.11, P = 1e-200, N = 7824) | (0.9, -0.0025, P = 0.97, N = 859) |
rs73214896(T)/12:121296608* | SPPL3 | (0.054, 0.21, P = 8.1e-07, N = 1909) | (0.022, 0.37, P = 0.022, N = 859) |
rs10849820(A)/12:121375558* | intergenic | (0.91, 0.068, P = 5.1e-24, N = 7824) | (0.95, -0.025, P = 0.82, N = 859) |
rs12368199(A)/12:121472167* | OASL | (0.15, 0.12, P = 1.7e-121, N = 7824) | (0.11, 0.0095, P = 0.91, N = 859) |
rs4556628(T)/12:121477912* | OASL | (0.3, 0.068, P = 7e-58, N = 7824) | (0.35, 0.016, P = 0.76, N = 859) |
rs10849843(A)/12:121544500* | RP11-216P16.6 | (0.043, -0.047, P = 6.6e-07, N = 7824) | (0.055, -0.072, P = 0.5, N = 859) |
rs7134248(T)/12:121897052* | KDM2B | (0.5, 0.031, P = 2.6e-05, N = 7824) | (0.38, 0.017, P = 0.74, N = 859) |
rs2656823(G)/12:127815260* | RP11-955H22.3 | (0.25, 1.2, P = 3.8e-06, N = 1909) | (0.58, -0.026, P = 0.6, N = 859) |
rs34875552(G)/12:127931158 | intergenic | (0.21, -0.51, P = 9.4e-07, N = 1909) | (0.074, 0.032, P = 0.72, N = 859) |
rs17582686(C)/12:41961745 | PDZRN4 | (0.12, 0.16, P = 2.8e-06, N = 1909) | (0.022, -0.14, P = 0.37, N = 859) |
rs1353147(A)/12:44815705* | intergenic | (0.91, 0.031, P = 4.2e-06, N = 7824) | (0.54, -0.053, P = 0.28, N = 859) |
rs76038866(G)/12:70398710 | RP11-611E13.2 | (0.15, -0.15, P = 3.2e-06, N = 1909) | (0.019, 0.0063, P = 0.97, N = 859) |
rs11843062(T)/13:105985355 | intergenic | (0.85, 0.021, P = 4.1e-05, N = 7824) | (0.93, -0.18, P = 0.047, N = 859) |
rs2323477(A)/13:37968251* | intergenic | (0.56, 0.92, P = 8.4e-06, N = 1909) | (0.47, -0.097, P = 0.041, N = 859) |
rs2762180(C)/13:43749805 | intergenic | (0.019, -0.42, P = 4e-06, N = 1909) | (0.077, -0.014, P = 0.88, N = 859) |
rs12866255(A)/13:46303377 | intergenic | (0.13, -0.32, P = 4.4e-06, N = 1909) | (0.063, -0.092, P = 0.34, N = 859) |
rs4982433(T)/14:21703122 | HNRNPC | (0.046, -0.43, P = 1e-05, N = 1909) | (0.016, -0.25, P = 0.2, N = 859) |
rs181315(A)/14:48336387 | intergenic | (0.93, 0.28, P = 6.4e-06, N = 1909) | (0.99, -0.27, P = 0.24, N = 859) |
rs11620955(A)/14:65491255* | FNTB | (0.48, -0.016, P = 9.9e-06, N = 7824) | (0.29, -0.016, P = 0.76, N = 859) |
rs77157541(C)/14:84364103 | intergenic | (0.085, -0.45, P = 1.7e-06, N = 1909) | (0.011, 0.11, P = 0.63, N = 859) |
rs58341578(A)/15:102065017 | PCSK6 | (0.035, 0.62, P = 2.6e-06, N = 1909) | (0.052, 0.12, P = 0.28, N = 859) |
rs2066705(T)/15:25937004 | ATP10A | (0.67, -0.38, P = 5.1e-06, N = 1909) | (0.2, -0.0033, P = 0.96, N = 859) |
rs1827480(T)/15:32018249 | OTUD7A | (0.69, 0.28, P = 1.1e-06, N = 1909) | (0.61, 0.1, P = 0.044, N = 859) |
rs8036376(A)/15:39868627 | THBS1 | (0.87, -0.022, P = 2.6e-05, N = 7824) | (0.94, 0.16, P = 0.1, N = 859) |
rs2956875(A)/15:76599041* | ETFA | (0.89, -0.034, P = 1.1e-08, N = 7824) | (0.78, -0.024, P = 0.68, N = 859) |
rs12903671(G)/15:86784034 | AGBL1 | (0.61, 0.22, P = 5.8e-06, N = 1909) | (0.74, -0.062, P = 0.25, N = 859) |
rs294546(A)/15:94847577 | MCTP2 | (0.55, -0.33, P = 4.6e-06, N = 1909) | (0.77, 0.13, P = 0.031, N = 859) |
rs7191762(A)/16:23752777* | intergenic | (0.2, 1.3, P = 6e-06, N = 1909) | (0.17, 0.077, P = 0.23, N = 859) |
rs2297514(C)/17:26093315 | NOS2 | (0.41, 0.77, P = 7.8e-06, N = 1909) | (0.55, -0.026, P = 0.6, N = 859) |
rs2106336(T)/17:49800464* | CA10 | (0.25, 0.69, P = 8.2e-06, N = 1909) | (0.096, 0.02, P = 0.8, N = 859) |
rs12970487(G)/18:25809979 | intergenic | (0.051, -0.41, P = 4.9e-07, N = 1909) | (0.083, -0.036, P = 0.68, N = 859) |
rs11660811(A)/18:59870563 | KIAA1468 | (0.12, -0.32, P = 1.5e-06, N = 1909) | (0.026, -0.14, P = 0.35, N = 859) |
rs12979749(G)/19:17463781* | PLVAP | (0.055, -0.35, P = 5.6e-06, N = 1909) | (0.13, 0.092, P = 0.2, N = 859) |
rs3974831(G)/19:54306299* | NLRP12 | (0.23, -0.4, P = 2.9e-06, N = 1909) | (0.12, -0.094, P = 0.2, N = 859) |
rs10166038(A)/2:127442846 | GYPC | (0.68, 0.018, P = 2.1e-05, N = 7824) | (0.82, -0.0078, P = 0.9, N = 859) |
rs4575678(C)/2:160184773 | BAZ2B | (0.73, -0.31, P = 3.2e-06, N = 1909) | (0.43, 0.044, P = 0.35, N = 859) |
rs355896(A)/2:165635908* | COBLL1 | (0.43, -0.014, P = 4.5e-05, N = 7824) | (0.8, -0.0099, P = 0.87, N = 859) |
rs35467545(A)/2:228119461 | COL4A3 | (0.093, -0.42, P = 7.7e-06, N = 1909) | (0.038, 0.038, P = 0.77, N = 859) |
rs4663190(T)/2:236174661 | intergenic | (0.26, 0.29, P = 7.3e-06, N = 1909) | (0.7, -0.028, P = 0.61, N = 859) |
rs150411636(T)/2:26280681 | RAB10 | (0.012, 0.67, P = 3.5e-06, N = 1909) | (0.038, -0.022, P = 0.86, N = 859) |
rs2122033(C)/2:6366461* | intergenic | (0.72, -0.19, P = 8.7e-06, N = 1909) | (0.92, -0.094, P = 0.29, N = 859) |
rs17697184(T)/2:70844368* | ADD2 | (0.017, 0.12, P = 4.2e-05, N = 7824) | (0.03, -0.093, P = 0.5, N = 859) |
rs17680254(C)/2:7405775* | RP11-557L19.1 | (0.17, -0.34, P = 7.8e-06, N = 1909) | (0.033, 0.27, P = 0.043, N = 859) |
rs6043520(C)/20:15738249 | MACROD2 | (0.38, 1, P = 7e-06, N = 1909) | (0.66, 0.036, P = 0.49, N = 859) |
rs79183297(C)/20:25726841 | intergenic | (0.05, 0.62, P = 9.9e-06, N = 1909) | (0.044, 0.09, P = 0.44, N = 859) |
rs564621(A)/21:31541034 | CLDN17 | (0.9, -0.34, P = 9.7e-07, N = 1909) | (0.85, -0.063, P = 0.35, N = 859) |
rs9613176(T)/22:26804801 | intergenic | (0.26, 1.3, P = 6.2e-06, N = 1909) | (0.06, 0.03, P = 0.77, N = 859) |
rs73479548(C)/22:48657745 | intergenic | (0.025, 0.27, P = 8.5e-07, N = 1909) | (0.063, -0.094, P = 0.34, N = 859) |
rs136770(G)/22:49800204* | intergenic | (0.53, -0.39, P = 1.4e-06, N = 1909) | (0.46, -0.021, P = 0.66, N = 859) |
rs6808851(T)/3:20505047 | intergenic | (0.88, 0.025, P = 2.3e-05, N = 7824) | (0.74, 0.029, P = 0.6, N = 859) |
rs11915197(T)/3:20781663 | intergenic | (0.59, -0.42, P = 6.6e-06, N = 1909) | (0.52, -0.0098, P = 0.84, N = 859) |
rs1515458(G)/3:21913964 | ZNF385D | (0.28, 0.44, P = 5.4e-06, N = 1909) | (0.21, -0.028, P = 0.63, N = 859) |
rs11923037(C)/3:22487778 | intergenic | (0.056, 0.73, P = 2.8e-06, N = 1909) | (0.025, 0.062, P = 0.69, N = 859) |
rs10510534(A)/3:23048172* | intergenic | (0.062, 0.95, P = 8.8e-06, N = 1909) | (0.032, 0.034, P = 0.8, N = 859) |
rs6445312(T)/3:63055960 | LINC00698 | (0.84, -0.5, P = 9.6e-06, N = 1909) | (0.76, -0.0016, P = 0.98, N = 859) |
rs12646870(C)/4:146764120 | ZNF827 | (0.52, 0.65, P = 9.2e-06, N = 1909) | (0.59, -0.0069, P = 0.89, N = 859) |
rs3103197(T)/4:42344469 | RP11-63A11.1 | (0.57, -0.017, P = 3.8e-05, N = 7824) | (0.77, -0.0059, P = 0.92, N = 859) |
rs72862822(C)/4:73516604* | intergenic | (0.069, 0.62, P = 3.5e-07, N = 1909) | (0.22, -0.01, P = 0.86, N = 859) |
rs71607390(G)/4:77775612 | AC104687.1 | (0.034, -0.37, P = 8.1e-06, N = 1909) | (0.015, -0.21, P = 0.3, N = 859) |
rs76135410(A)/5:111566364 | EPB41L4A | (0.097, -0.4, P = 9.5e-06, N = 1909) | (0.077, 0.041, P = 0.66, N = 859) |
rs10477531(T)/5:114714807* | intergenic | (0.47, 0.24, P = 5e-06, N = 1909) | (0.34, -0.034, P = 0.51, N = 859) |
rs12521097(A)/5:131575338* | P4HA2 | (0.47, -0.018, P = 3.6e-07, N = 7824) | (0.43, 0.094, P = 0.054, N = 859) |
rs7719428(C)/5:132180919* | RNA5SP192 | (0.33, -0.018, P = 1.6e-05, N = 7824) | (0.47, -0.12, P = 0.017, N = 859) |
rs1392378(T)/5:165821645* | intergenic | (0.77, 0.54, P = 8.2e-06, N = 1909) | (0.38, 0.017, P = 0.73, N = 859) |
rs9313646(G)/5:173155866 | AC008674.1 | (0.32, -0.4, P = 4e-06, N = 1909) | (0.29, 0.034, P = 0.53, N = 859) |
rs4458729(T)/6:104189269* | intergenic | (0.54, 0.78, P = 4.8e-06, N = 1909) | (0.35, 0.032, P = 0.53, N = 859) |
rs58492300(G)/6:110684097 | METTL24 | (0.33, -0.41, P = 3.6e-07, N = 1909) | (0.34, -0.028, P = 0.58, N = 859) |
rs1288153(A)/6:113293306 | RNU6-1163P | (0.98, -0.18, P = 7.9e-06, N = 1909) | (0.85, 0.01, P = 0.88, N = 859) |
rs10224061(C)/7:19852619* | AC004543.2 | (0.15, -0.15, P = 9.5e-06, N = 1909) | (0.39, 0.018, P = 0.72, N = 859) |
rs6462769(T)/7:37577324* | intergenic | (0.71, 0.019, P = 5.7e-06, N = 7824) | (0.64, -0.0053, P = 0.92, N = 859) |
rs9638994(C)/7:45895291* | intergenic | (0.31, 0.18, P = 1.4e-06, N = 1909) | (0.56, -0.076, P = 0.13, N = 859) |
rs2178045(A)/7:70231649 | AUTS2 | (0.099, -0.05, P = 3.7e-05, N = 7824) | (0.1, -0.17, P = 0.031, N = 859) |
rs695195(A)/8:8633528 | RP11-211C9.1 | (0.16, -0.21, P = 4.4e-06, N = 1909) | (0.44, -0.032, P = 0.52, N = 859) |
rs13289885(G)/9:108138947 | SLC44A1 | (0.029, 0.93, P = 9.5e-06, N = 1909) | (0.32, 0.055, P = 0.29, N = 859) |
rs62566532(G)/9:6743110 | KDM4C | (0.17, -0.19, P = 7.1e-07, N = 1909) | (0.1, 0.022, P = 0.78, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 92 | 0.003 (-0.025- 0.031) P=0.84 | 187 | 561 | 0.0128 (0- 48.5) | NA | NA | 0.0042 P=0.65 |
MR-Egger | 92 | -0.0036 (-0.045- 0.037) P=0.86 | 187 | 561 | 0.0128 (0- 48.5) | 85 | 0.63 | 0.0042 P=0.65 |
Weighted median | 92 | 0.023 (-0.019- 0.066) P=0.28 | 187 | 561 | 0.0128 (0- 48.5) | NA | NA | 0.0042 P=0.65 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0 | 0.01 | 0.21 | 0.84 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 47 | 0.018 (-0.021- 0.057) P=0.37 | 190 | 298 | 0.00282 (0- 54.4) | NA | NA | -0.016 P=0.4 |
MR-Egger | 47 | 0.045 (-0.03- 0.12) P=0.25 | 190 | 298 | 0.00282 (0- 54.4) | 39 | 0.72 | -0.016 P=0.4 |
Weighted median | 47 | 0.025 (-0.038- 0.089) P=0.43 | 190 | 298 | 0.00282 (0- 54.4) | NA | NA | -0.016 P=0.4 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.02 | 0.02 | 0.89 | 0.38 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Tiglylcarnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs115886573(A)/1:182541031 | RNASEL | (0.26, -0.15, P = 4.7e-06, N = 1956) | (0.17, 0.036, P = 0.57, N = 859) |
rs149513885(A)/10:36506292 | intergenic | (0.13, 0.17, P = 3.3e-06, N = 1956) | (0.015, -0.18, P = 0.38, N = 859) |
rs10904923(G)/10:6807941* | intergenic | (0.092, -0.23, P = 1.9e-06, N = 1956) | (0.031, -0.075, P = 0.59, N = 859) |
rs10998884(G)/10:71389673 | C10orf35 | (0.17, 0.27, P = 9.8e-06, N = 1956) | (0.066, 0.15, P = 0.1, N = 859) |
rs12814936(A)/12:30164763 | intergenic | (0.17, 0.17, P = 1.3e-06, N = 1956) | (0.031, 0.13, P = 0.35, N = 859) |
rs11856930(G)/15:34028778* | RYR3 | (0.46, -0.14, P = 9.2e-06, N = 1956) | (0.38, 0.085, P = 0.089, N = 859) |
rs8041137(G)/15:89570030 | intergenic | (0.63, 0.19, P = 1.9e-06, N = 1956) | (0.93, 0.039, P = 0.67, N = 859) |
rs924135(T)/16:16123459* | ABCC1 | (0.6, -0.15, P = 1.1e-06, N = 1956) | (0.47, 0.06, P = 0.21, N = 859) |
rs62097702(A)/18:77148177 | intergenic | (0.27, -0.2, P = 1.3e-06, N = 1956) | (0.099, -0.099, P = 0.22, N = 859) |
rs139567843(A)/19:45019167 | CEACAM20 | (0.013, -0.77, P = 9.1e-06, N = 1956) | (0.012, 0.31, P = 0.17, N = 859) |
rs56285383(T)/2:173602 | intergenic | (0.3, 0.11, P = 9.2e-06, N = 1956) | (0.058, -0.11, P = 0.28, N = 859) |
rs6717796(C)/2:18337669* | KCNS3 | (0.35, 0.18, P = 1.3e-06, N = 1956) | (0.73, -0.091, P = 0.09, N = 859) |
rs3092505(G)/20:44812412 | CDH22 | (0.27, 0.13, P = 1e-05, N = 1956) | (0.23, -0.012, P = 0.84, N = 859) |
rs73049045(G)/3:30034421 | RBMS3 | (0.086, 0.38, P = 4.6e-07, N = 1956) | (0.016, -0.13, P = 0.52, N = 859) |
rs62252141(C)/3:32514805 | CMTM7 | (0.093, 0.29, P = 2.7e-06, N = 1956) | (0.015, 0.35, P = 0.068, N = 859) |
rs1372425(C)/3:77317940 | ROBO2 | (0.11, -0.28, P = 3.5e-06, N = 1956) | (0.14, 0.12, P = 0.093, N = 859) |
rs372660405(AAAAC)/4:101436992 | EMCN | (0.083, 0.29, P = 2.6e-06, N = 1956) | (0.024, 0.19, P = 0.24, N = 859) |
rs28703837(C)/4:32085737 | RP11-734I18.1 | (0.11, -0.28, P = 4.1e-07, N = 1956) | (0.22, 0.018, P = 0.75, N = 859) |
rs112580372(A)/4:89315397* | HERC6 | (0.21, 0.21, P = 3.5e-06, N = 1956) | (0.12, -0.07, P = 0.35, N = 859) |
rs10043226(C)/5:107243859 | FBXL17 | (0.076, -0.33, P = 5.1e-06, N = 1956) | (0.15, 0.035, P = 0.61, N = 859) |
rs2338821(G)/5:141509433* | NDFIP1 | (0.52, -0.13, P = 3.6e-06, N = 1956) | (0.78, -0.027, P = 0.65, N = 859) |
rs115960372(T)/5:1518494 | LPCAT1 | (0.097, 0.29, P = 5.3e-06, N = 1956) | (0.017, -0.34, P = 0.066, N = 859) |
rs1874167(T)/5:62424015 | intergenic | (0.63, 0.21, P = 6.9e-06, N = 1956) | (0.35, 0.029, P = 0.56, N = 859) |
rs9370853(A)/6:15991331* | RP11-401E14.2 | (0.12, 0.23, P = 3.9e-06, N = 1956) | (0.085, -0.074, P = 0.39, N = 859) |
rs4367541(C)/8:13041969 | DLC1 | (0.56, 0.12, P = 4.8e-06, N = 1956) | (0.51, -0.024, P = 0.61, N = 859) |
rs1689897(A)/8:16847582 | FGF20 | (0.23, 0.18, P = 4.7e-06, N = 1956) | (0.3, 0.035, P = 0.5, N = 859) |
rs4875308(A)/8:4060604* | CSMD1 | (0.49, 0.17, P = 2.7e-06, N = 1956) | (0.18, -0.063, P = 0.31, N = 859) |
rs3824419(C)/9:1056728* | DMRT2 | (0.34, 0.16, P = 9.4e-07, N = 1956) | (0.16, -0.028, P = 0.66, N = 859) |
rs7021791(A)/9:10928554* | intergenic | (0.6, -0.12, P = 1e-06, N = 1956) | (0.79, -0.022, P = 0.7, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 29 | -0.11 (-0.25- 0.022) P=0.1 | 25 | 36 | 0.00319 (0- 58.6) | NA | NA | -0.0091 P=0.82 |
MR-Egger | 29 | -0.07 (-0.47- 0.33) P=0.73 | 25 | 36 | 0.00319 (0- 58.6) | 30 | 0.31 | -0.0091 P=0.82 |
Weighted median | 29 | -0.11 (-0.31- 0.088) P=0.28 | 25 | 36 | 0.00319 (0- 58.6) | NA | NA | -0.0091 P=0.82 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.11 | 0.07 | -1.64 | 0.11 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 19 | -0.033 (-0.21- 0.14) P=0.71 | 26 | 25 | 0.000966 (0- 76.4) | NA | NA | 0.028 P=0.61 |
MR-Egger | 19 | -0.15 (-0.63- 0.33) P=0.55 | 26 | 25 | 0.000966 (0- 76.4) | 22 | 0.2 | 0.028 P=0.61 |
Weighted median | 19 | -0.083 (-0.32- 0.15) P=0.49 | 26 | 25 | 0.000966 (0- 76.4) | NA | NA | 0.028 P=0.61 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.03 | 0.09 | -0.37 | 0.72 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Glutarylcarnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs7533102(T)/1:107828950 | NTNG1 | (0.38, 0.011, P = 1.6e-05, N = 7824) | (0.19, 0.077, P = 0.2, N = 859) |
rs2798691(T)/1:113579103* | RP11-31F15.2 | (0.32, 0.022, P = 2.4e-05, N = 7824) | (0.29, 0.0043, P = 0.93, N = 859) |
rs7531982(A)/1:154596122* | ADAR | (0.51, 0.011, P = 9.1e-06, N = 7824) | (0.86, 0.11, P = 0.096, N = 859) |
rs10918734(A)/1:167625495* | RCSD1 | (0.95, 0.024, P = 6e-06, N = 7824) | (0.8, 0.0092, P = 0.88, N = 859) |
rs17015767(C)/1:206951398 | intergenic | (0.24, -0.011, P = 3.9e-05, N = 7824) | (0.13, -0.016, P = 0.83, N = 859) |
rs13375749(T)/1:53695882* | MAGOH | (0.78, 0.03, P = 2.8e-28, N = 7824) | (0.79, 0.048, P = 0.42, N = 859) |
rs12035926(A)/1:53752134 | LRP8 | (0.61, -0.011, P = 1.7e-05, N = 7824) | (0.91, -0.0038, P = 0.96, N = 859) |
rs1193243(T)/1:7524776 | CAMTA1 | (0.4, 0.011, P = 4.3e-05, N = 7824) | (0.58, -0.011, P = 0.82, N = 859) |
rs12745456(T)/1:76108055* | RP4-595K12.2 | (0.73, 0.012, P = 7.3e-06, N = 7824) | (0.94, 0.018, P = 0.87, N = 859) |
rs11189859(A)/10:100657705* | HPSE2 | (0.89, 0.033, P = 1.5e-05, N = 7824) | (0.95, -0.017, P = 0.88, N = 859) |
rs7923727(A)/10:11165615 | CELF2 | (0.53, -0.012, P = 2.1e-06, N = 7824) | (0.63, -0.071, P = 0.15, N = 859) |
rs11017260(T)/10:129113943* | DOCK1 | (0.94, -0.022, P = 1.8e-05, N = 7824) | (0.98, -0.13, P = 0.5, N = 859) |
rs573812(T)/10:25631649 | GPR158 | (0.81, 0.012, P = 6.1e-06, N = 7824) | (0.52, 0.032, P = 0.51, N = 859) |
rs7071006(A)/10:98382165* | PIK3AP1 | (0.81, 0.014, P = 3.7e-05, N = 7824) | (0.47, 0.016, P = 0.75, N = 859) |
rs10895511(T)/11:103552188* | RP11-563P16.1 | (0.95, -0.053, P = 2.9e-06, N = 7824) | (0.53, -0.019, P = 0.7, N = 859) |
rs7118414(C)/11:117811548 | intergenic | (0.39, -0.011, P = 3.1e-05, N = 7824) | (0.33, -0.048, P = 0.36, N = 859) |
rs4964150(T)/12:106017797* | intergenic | (0.22, -0.011, P = 3e-05, N = 7824) | (0.21, -0.038, P = 0.52, N = 859) |
rs7970615(T)/12:130637090 | FZD10-AS1 | (0.23, 0.026, P = 1.9e-05, N = 7824) | (0.25, -0.073, P = 0.19, N = 859) |
rs716955(A)/12:75593472* | KCNC2 | (0.81, 0.013, P = 3.3e-05, N = 7824) | (0.91, 0.096, P = 0.25, N = 859) |
rs3809197(T)/12:96883418* | C12orf55 | (0.013, 0.11, P = 3.2e-07, N = 7824) | (0.13, -0.076, P = 0.29, N = 859) |
rs9573172(A)/13:73953498 | intergenic | (0.95, -0.023, P = 9.5e-06, N = 7824) | (0.99, 0.054, P = 0.79, N = 859) |
rs11625658(A)/14:100723577* | YY1 | (0.25, -0.013, P = 9e-07, N = 7824) | (0.23, 0.0019, P = 0.97, N = 859) |
rs1059264(T)/14:100769163 | SLC25A29 | (0.33, -0.015, P = 5.6e-08, N = 7824) | (0.17, 0.042, P = 0.51, N = 859) |
rs12050391(A)/14:32771346 | intergenic | (0.22, -0.011, P = 1.9e-05, N = 7824) | (0.16, 0.013, P = 0.84, N = 859) |
rs2291449(A)/15:76579234* | ETFA | (0.91, -0.028, P = 1.4e-10, N = 7824) | (0.99, 0.1, P = 0.62, N = 859) |
rs4636879(T)/15:76630303* | ISL2 | (0.19, 0.013, P = 5e-06, N = 7824) | (0.73, 0.036, P = 0.51, N = 859) |
rs246234(C)/16:16128742* | ABCC1 | (0.3, -0.02, P = 2.6e-14, N = 7824) | (0.5, -0.052, P = 0.28, N = 859) |
rs8054670(T)/16:16132134* | ABCC1 | (0.78, 0.015, P = 8e-09, N = 7824) | (0.63, 0.047, P = 0.33, N = 859) |
rs8056893(A)/16:68304392* | SLC7A6 | (0.73, -0.03, P = 2.2e-30, N = 7824) | (0.95, 0.11, P = 0.33, N = 859) |
rs11644360(T)/16:68327089* | SLC7A6 | (0.54, -0.018, P = 1.1e-12, N = 7824) | (0.11, 0.012, P = 0.88, N = 859) |
rs933457(A)/17:36897107 | PCGF2 | (0.95, -0.025, P = 4.1e-05, N = 7824) | (0.71, 0.03, P = 0.57, N = 859) |
rs766990(A)/18:6917171* | ARHGAP28 | (0.2, 0.014, P = 2.8e-05, N = 7824) | (0.23, 0.033, P = 0.57, N = 859) |
rs10411504(A)/19:12753644* | MAN2B1 | (0.93, -0.023, P = 2.8e-05, N = 7824) | (0.93, 0.081, P = 0.4, N = 859) |
rs4804736(A)/19:12936881 | RTBDN | (0.16, -0.018, P = 6.8e-06, N = 7824) | (0.029, -0.12, P = 0.4, N = 859) |
rs8012(A)/19:13010520 | GCDH | (0.44, 0.037, P = 6.4e-45, N = 7824) | (0.19, 0.15, P = 0.014, N = 859) |
rs11085835(T)/19:13332010 | CACNA1A | (0.2, 0.015, P = 1e-08, N = 7824) | (0.13, 0.074, P = 0.29, N = 859) |
rs7252894(T)/19:43719940 | CEACAMP10 | (0.032, -0.085, P = 2e-05, N = 7824) | (0.8, -0.0037, P = 0.95, N = 859) |
rs7255066(T)/19:45146103 | PVR | (0.74, -0.011, P = 4.3e-05, N = 7824) | (0.19, 0.031, P = 0.61, N = 859) |
rs3770471(T)/2:15770775 | DDX1 | (0.15, -0.015, P = 1.5e-05, N = 7824) | (0.42, 0.034, P = 0.49, N = 859) |
rs715(T)/2:211543055* | CPS1 | (0.72, 0.021, P = 3.5e-16, N = 7824) | (0.81, -0.061, P = 0.33, N = 859) |
rs4673545(A)/2:211565535* | intergenic | (0.73, 0.014, P = 4.5e-08, N = 7824) | (0.79, 0.0017, P = 0.98, N = 859) |
rs11687290(A)/2:211647954* | intergenic | (0.73, -0.012, P = 7e-06, N = 7824) | (0.83, 0.02, P = 0.75, N = 859) |
rs6745507(C)/2:213577416 | AC079610.1 | (0.62, -0.012, P = 3.7e-06, N = 7824) | (0.45, -0.044, P = 0.36, N = 859) |
rs12621141(A)/2:99927112 | C2orf15 | (0.42, -0.013, P = 9.2e-07, N = 7824) | (0.24, 0.0089, P = 0.88, N = 859) |
rs12625248(T)/20:55393483* | intergenic | (0.83, -0.03, P = 7.2e-06, N = 7824) | (0.89, -0.18, P = 0.021, N = 859) |
rs8134964(A)/21:23291223* | intergenic | (0.32, 0.013, P = 4.3e-05, N = 7824) | (0.28, 0.028, P = 0.61, N = 859) |
rs2838535(T)/21:45681579* | DNMT3L | (0.081, 0.037, P = 4.3e-05, N = 7824) | (0.16, -0.044, P = 0.5, N = 859) |
rs7364173(T)/22:50681029* | TUBGCP6 | (0.59, 0.011, P = 4.7e-05, N = 7824) | (0.6, -0.057, P = 0.26, N = 859) |
rs12635778(A)/3:103451972 | intergenic | (0.97, 0.033, P = 3.1e-05, N = 7824) | (0.9, 0.077, P = 0.34, N = 859) |
rs9844004(C)/3:170958358 | TNIK | (0.24, -0.016, P = 4.3e-05, N = 7824) | (0.41, -0.03, P = 0.54, N = 859) |
rs1524307(T)/3:22673600 | intergenic | (0.48, 0.025, P = 2e-06, N = 7824) | (0.54, 0.056, P = 0.25, N = 859) |
rs7633111(T)/3:30840808 | GADL1 | (0.58, -0.013, P = 1.9e-06, N = 7824) | (0.2, -0.025, P = 0.68, N = 859) |
rs9311834(A)/3:62030849* | PTPRG | (0.89, -0.015, P = 3.8e-05, N = 7824) | (0.76, -0.013, P = 0.82, N = 859) |
rs6853898(A)/4:142171146 | RP11-586L23.1 | (0.96, -0.025, P = 4.3e-05, N = 7824) | (0.79, 0.034, P = 0.56, N = 859) |
rs2070630(C)/4:159644494* | PPID | (0.29, -0.014, P = 1.4e-07, N = 7824) | (0.29, -0.047, P = 0.38, N = 859) |
rs17223240(A)/4:159924295* | C4orf45 | (0.091, -0.019, P = 2e-05, N = 7824) | (0.012, 0.1, P = 0.66, N = 859) |
rs13112606(A)/4:17468047* | QDPR | (0.78, -0.011, P = 3.5e-05, N = 7824) | (0.82, 0.0036, P = 0.96, N = 859) |
rs3911612(A)/4:180493646* | intergenic | (0.78, 0.011, P = 2.9e-05, N = 7824) | (0.35, -0.054, P = 0.28, N = 859) |
rs17608635(A)/4:45079676* | intergenic | (0.23, -0.013, P = 5e-07, N = 7824) | (0.18, 0.017, P = 0.78, N = 859) |
rs16837061(A)/4:5383127 | STK32B | (0.8, 0.012, P = 9.8e-06, N = 7824) | (0.45, -0.09, P = 0.07, N = 859) |
rs10003471(T)/4:92200866* | CCSER1 | (0.11, 0.02, P = 5.7e-07, N = 7824) | (0.029, -0.091, P = 0.52, N = 859) |
rs1981524(T)/5:131756506* | C5orf56 | (0.2, 0.016, P = 3.1e-09, N = 7824) | (0.2, -0.13, P = 0.033, N = 859) |
rs12521174(A)/5:156141605* | SGCD | (0.95, 0.027, P = 7.3e-06, N = 7824) | (0.89, 0.011, P = 0.88, N = 859) |
rs1486945(T)/5:1943884* | RP11-259O2.1 | (0.74, -0.012, P = 8.6e-06, N = 7824) | (0.68, -0.02, P = 0.7, N = 859) |
rs2441949(A)/5:2627075* | intergenic | (0.091, 0.021, P = 1.1e-05, N = 7824) | (0.022, 0.032, P = 0.85, N = 859) |
rs2561114(A)/5:38349215 | EGFLAM | (0.69, -0.011, P = 3.1e-05, N = 7824) | (0.22, -0.051, P = 0.38, N = 859) |
rs1697824(C)/5:73710929* | CTC-419K13.1 | (0.41, -0.022, P = 1.4e-05, N = 7824) | (0.63, 0.0084, P = 0.87, N = 859) |
rs1479045(T)/6:124963281* | NKAIN2 | (0.21, 0.011, P = 4.6e-05, N = 7824) | (0.36, -0.055, P = 0.26, N = 859) |
rs683369(C)/6:160551204* | SLC22A1 | (0.77, -0.014, P = 1.1e-07, N = 7824) | (0.97, -0.17, P = 0.21, N = 859) |
rs3798167(T)/6:160567928* | SLC22A1 | (0.2, -0.013, P = 7.3e-07, N = 7824) | (0.16, -0.04, P = 0.55, N = 859) |
rs3125055(A)/6:160736787* | intergenic | (0.12, 0.017, P = 2.1e-05, N = 7824) | (0.22, 0.045, P = 0.42, N = 859) |
rs6941991(T)/6:18396689* | RNF144B | (0.42, 0.021, P = 4.1e-05, N = 7824) | (0.36, -0.038, P = 0.46, N = 859) |
rs12202023(T)/6:19351564* | RPL5P20 | (0.79, -0.014, P = 3.9e-07, N = 7824) | (0.92, 0.16, P = 0.077, N = 859) |
rs807532(T)/6:24549668* | KIAA0319 | (0.069, 0.02, P = 7.5e-06, N = 7824) | (0.15, 0.025, P = 0.71, N = 859) |
rs12192135(A)/6:82001561* | intergenic | (0.26, -0.012, P = 4.7e-06, N = 7824) | (0.053, 0.088, P = 0.41, N = 859) |
rs9353315(A)/6:86149938* | intergenic | (0.88, -0.015, P = 2.2e-05, N = 7824) | (0.73, -0.053, P = 0.34, N = 859) |
rs10241456(A)/7:129712524 | KLHDC10 | (0.54, 0.012, P = 7.6e-06, N = 7824) | (0.82, 0.13, P = 0.037, N = 859) |
rs2161873(T)/7:131974388* | PLXNA4 | (0.71, 0.011, P = 3e-05, N = 7824) | (0.65, -0.088, P = 0.087, N = 859) |
rs6967077(A)/7:51628033 | intergenic | (0.21, 0.011, P = 4e-05, N = 7824) | (0.32, -0.11, P = 0.034, N = 859) |
rs11780215(A)/8:118057538* | SLC30A8 | (0.85, 0.016, P = 3.7e-06, N = 7824) | (0.97, 0.12, P = 0.44, N = 859) |
rs4307325(A)/8:124421397 | ATAD2 | (0.7, 0.011, P = 1.5e-05, N = 7824) | (0.66, -0.11, P = 0.029, N = 859) |
rs11784254(A)/8:40357901 | intergenic | (0.23, 0.011, P = 2.5e-05, N = 7824) | (0.29, 0.078, P = 0.15, N = 859) |
rs12680983(T)/8:42104338 | RP11-231D20.2 | (0.016, 0.11, P = 2.1e-05, N = 7824) | (0.046, 0.0082, P = 0.94, N = 859) |
rs10097669(T)/8:4437465 | CSMD1 | (0.68, 0.011, P = 4.3e-05, N = 7824) | (0.95, 0.16, P = 0.16, N = 859) |
rs10108023(A)/8:49717484 | intergenic | (0.26, 0.012, P = 9.8e-06, N = 7824) | (0.77, 0.00052, P = 0.99, N = 859) |
rs17641971(T)/8:49884817* | intergenic | (0.66, -0.025, P = 3.4e-22, N = 7824) | (0.77, -0.078, P = 0.17, N = 859) |
rs11779189(C)/8:50030592* | intergenic | (0.61, 0.018, P = 6.8e-13, N = 7824) | (0.42, -0.0095, P = 0.84, N = 859) |
rs12543837(A)/8:6413948 | MCPH1 | (0.88, 0.032, P = 1.7e-05, N = 7824) | (0.94, -0.033, P = 0.74, N = 859) |
rs2033069(T)/8:81079607 | TPD52 | (0.32, 0.011, P = 4.7e-05, N = 7824) | (0.66, 0.033, P = 0.51, N = 859) |
rs2987735(A)/9:103955515 | LPPR1 | (0.21, 0.011, P = 2.1e-05, N = 7824) | (0.41, -0.044, P = 0.38, N = 859) |
rs1169752(A)/9:29329933* | intergenic | (0.77, -0.011, P = 4.5e-05, N = 7824) | (0.86, -0.06, P = 0.4, N = 859) |
rs6559415(A)/9:81443855* | intergenic | (0.26, 0.011, P = 3e-05, N = 7824) | (0.74, -0.011, P = 0.84, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 92 | 0.18 (-0.34- 0.7) P=0.5 | 0.86 | 1 | 0 (0- 32.5) | NA | NA | 0.0065 P=0.54 |
MR-Egger | 92 | -0.038 (-0.91- 0.83) P=0.93 | 0.86 | 1 | 0 (0- 32.5) | 86 | 0.61 | 0.0065 P=0.54 |
Weighted median | 92 | 0.044 (-0.85- 0.94) P=0.92 | 0.86 | 1 | 0 (0- 32.5) | NA | NA | 0.0065 P=0.54 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.18 | 0.27 | 0.67 | 0.5 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 37 | 0.37 (-0.51- 1.3) P=0.41 | 0.88 | 0.42 | 2.54 (0- 66.8) | NA | NA | 0.0047 P=0.77 |
MR-Egger | 37 | 0.22 (-1.1- 1.6) P=0.75 | 0.88 | 0.42 | 2.54 (0- 66.8) | 42 | 0.18 | 0.0047 P=0.77 |
Weighted median | 37 | 0.044 (-1.3- 1.3) P=0.95 | 0.88 | 0.42 | 2.54 (0- 66.8) | NA | NA | 0.0047 P=0.77 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.37 | 0.45 | 0.83 | 0.41 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Isovalerylcarnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs990034(A)/1:147251898* | RP11-433J22.3 | (0.56, -0.012, P = 1.3e-05, N = 7824) | (0.44, 0.084, P = 0.088, N = 859) |
rs10919117(A)/1:162267823* | NOS1AP | (0.51, -0.013, P = 4e-05, N = 7824) | (0.37, -0.07, P = 0.16, N = 859) |
rs2501856(C)/1:212856985* | BATF3 | (0.54, 0.012, P = 5.8e-06, N = 7824) | (0.75, 0.072, P = 0.19, N = 859) |
rs10638035(TTG)/1:219889972 | SLC30A10 | (0.43, -0.13, P = 2.7e-06, N = 1959) | (0.68, -0.016, P = 0.75, N = 859) |
rs35800687(G)/1:22731893 | intergenic | (0.31, 0.22, P = 5e-06, N = 1959) | (0.17, -0.061, P = 0.35, N = 859) |
rs771390(T)/1:34750936* | intergenic | (0.24, -0.016, P = 1.2e-05, N = 7824) | (0.19, -0.015, P = 0.8, N = 859) |
rs10889028(A)/1:57625649* | DAB1 | (0.42, -0.013, P = 7.1e-07, N = 7824) | (0.3, 0.089, P = 0.091, N = 859) |
rs10157665(A)/1:97734344* | DPYD | (0.74, -0.017, P = 4.2e-05, N = 7824) | (0.96, 0.14, P = 0.28, N = 859) |
rs4918121(A)/10:106392464 | intergenic | (0.31, -0.23, P = 6.1e-06, N = 1959) | (0.13, 0.11, P = 0.13, N = 859) |
rs884263(T)/10:36964639 | intergenic | (0.53, 0.011, P = 4.4e-05, N = 7824) | (0.5, 0.0013, P = 0.98, N = 859) |
rs7903712(C)/10:60516806* | BICC1 | (0.21, 0.014, P = 4.9e-05, N = 7824) | (0.36, 0.00082, P = 0.99, N = 859) |
rs12778367(A)/10:88116246 | GRID1 | (0.18, 0.2, P = 6.8e-06, N = 1959) | (0.026, -0.13, P = 0.38, N = 859) |
rs2852371(A)/11:106408212* | intergenic | (0.58, 0.013, P = 4e-06, N = 7824) | (0.55, 0.051, P = 0.29, N = 859) |
rs12294679(C)/11:11078054 | intergenic | (0.23, -0.015, P = 3.8e-05, N = 7824) | (0.058, 0.0012, P = 0.99, N = 859) |
rs4483623(T)/11:113352557 | intergenic | (0.97, -0.038, P = 2.3e-05, N = 7824) | (0.97, -0.026, P = 0.86, N = 859) |
rs7106005(T)/11:11598372 | GALNT18 | (0.82, 0.02, P = 7.7e-07, N = 7824) | (0.39, -0.061, P = 0.22, N = 859) |
rs2198256(T)/11:80187596* | intergenic | (0.53, 0.011, P = 4.9e-05, N = 7824) | (0.19, 0.011, P = 0.86, N = 859) |
rs80291290(T)/11:88372241 | GRM5 | (0.18, 0.23, P = 2.6e-06, N = 1959) | (0.034, 0.042, P = 0.75, N = 859) |
rs12281336(T)/11:98040562* | intergenic | (0.032, -0.085, P = 5e-05, N = 7824) | (0.09, -0.016, P = 0.85, N = 859) |
rs2682783(A)/12:119114569* | intergenic | (0.49, 0.012, P = 1.1e-05, N = 7824) | (0.51, -0.017, P = 0.71, N = 859) |
rs4882733(C)/12:128796587 | TMEM132C | (0.81, -0.019, P = 3.6e-05, N = 7824) | (0.6, -0.097, P = 0.045, N = 859) |
rs56076700(A)/12:129163020 | TMEM132C | (0.077, 0.35, P = 5e-06, N = 1959) | (0.069, 0.061, P = 0.52, N = 859) |
rs4763908(T)/12:13100332 | GPRC5D | (0.29, -0.015, P = 2.4e-05, N = 7824) | (0.78, -0.072, P = 0.21, N = 859) |
rs11051552(A)/12:31890602* | intergenic | (0.52, -0.012, P = 8.5e-06, N = 7824) | (0.36, -0.11, P = 0.032, N = 859) |
rs11177321(A)/12:69031913* | RAP1B | (0.12, 0.019, P = 1.6e-05, N = 7824) | (0.016, 0.011, P = 0.95, N = 859) |
rs535554250(GA)/13:33192654 | PDS5B | (0.29, 0.15, P = 7.8e-06, N = 1959) | (0.26, 0.064, P = 0.26, N = 859) |
rs73178899(G)/13:37901134 | intergenic | (0.14, 0.25, P = 4.1e-06, N = 1959) | (0.019, -0.12, P = 0.48, N = 859) |
rs8003699(G)/14:21322586 | intergenic | (0.85, -0.16, P = 4.9e-06, N = 1959) | (0.8, -0.039, P = 0.52, N = 859) |
rs2354322(T)/14:62708880 | intergenic | (0.67, 0.014, P = 3.2e-05, N = 7824) | (0.93, -0.32, P = 8e-04, N = 859) |
rs8007846(A)/14:66262963* | intergenic | (0.55, 0.012, P = 8.4e-06, N = 7824) | (0.22, -0.012, P = 0.83, N = 859) |
rs16970633(T)/15:40642877 | PHGR1 | (0.16, -0.019, P = 7.4e-06, N = 7824) | (0.33, 0.073, P = 0.15, N = 859) |
rs9635324(A)/15:40703211* | IVD | (0.61, 0.034, P = 1.9e-35, N = 7824) | (0.79, 0.022, P = 0.71, N = 859) |
rs17672041(T)/15:40722426* | IVD | (0.12, 0.03, P = 1.3e-11, N = 7824) | (0.019, 0.093, P = 0.6, N = 859) |
rs2291449(A)/15:76579234* | ETFA | (0.91, -0.029, P = 2.4e-08, N = 7824) | (0.99, 0.1, P = 0.62, N = 859) |
rs7170052(T)/15:93457650* | CHD2 | (0.76, 0.015, P = 3.1e-05, N = 7824) | (0.92, -0.18, P = 0.041, N = 859) |
rs13338173(A)/16:54227083 | intergenic | (0.79, -0.014, P = 5e-05, N = 7824) | (0.81, -0.00038, P = 0.99, N = 859) |
rs7212115(T)/17:10891477* | intergenic | (0.73, -0.016, P = 1.2e-05, N = 7824) | (0.57, 0.048, P = 0.28, N = 859) |
rs8098563(A)/18:19930691* | RP11-535A5.1 | (0.46, 0.013, P = 3e-05, N = 7824) | (0.37, 0.019, P = 0.71, N = 859) |
rs16947039(T)/18:27211242* | intergenic | (0.074, 0.023, P = 1.9e-05, N = 7824) | (0.16, -0.012, P = 0.86, N = 859) |
rs16977314(C)/18:40710349 | intergenic | (0.89, 0.018, P = 4.7e-05, N = 7824) | (0.98, -0.13, P = 0.41, N = 859) |
rs1878679(T)/18:40726416 | intergenic | (0.11, -0.018, P = 4.4e-05, N = 7824) | (0.056, 0.088, P = 0.41, N = 859) |
rs8099211(A)/18:43103958 | RP11-749H17.1 | (0.21, -0.015, P = 1.9e-05, N = 7824) | (0.39, -0.0087, P = 0.86, N = 859) |
rs36035559(A)/19:7121597 | INSR | (0.17, 0.17, P = 8.9e-06, N = 1959) | (0.015, 0.031, P = 0.88, N = 859) |
rs2138480(A)/2:118142725* | intergenic | (0.12, -0.019, P = 1.8e-05, N = 7824) | (0.02, -0.13, P = 0.46, N = 859) |
rs76530645(A)/2:175558061 | AC018890.6 | (0.11, -0.16, P = 4.6e-06, N = 1959) | (0.016, -0.043, P = 0.82, N = 859) |
rs11680464(A)/2:1882824* | MYT1L | (0.066, 0.025, P = 2.9e-05, N = 7824) | (0.043, -0.14, P = 0.24, N = 859) |
rs4505564(T)/2:240871018* | NDUFA10 | (0.79, 0.016, P = 4.9e-06, N = 7824) | (0.94, -0.041, P = 0.69, N = 859) |
rs17546912(C)/2:66225155 | AC074391.1 | (0.11, -0.31, P = 3.5e-06, N = 1959) | (0.015, -0.011, P = 0.96, N = 859) |
rs2232575(C)/20:36974512 | LBP | (0.16, -0.017, P = 3.3e-05, N = 7824) | (0.12, 0.006, P = 0.93, N = 859) |
rs1201971(T)/20:59290436 | intergenic | (0.47, 0.012, P = 1.4e-05, N = 7824) | (0.5, 0.02, P = 0.68, N = 859) |
rs4616554(A)/21:32420859* | intergenic | (0.076, -0.026, P = 1.2e-05, N = 7824) | (0.2, 0.033, P = 0.59, N = 859) |
rs9289761(T)/3:147443447 | intergenic | (0.55, 0.023, P = 3.9e-05, N = 7824) | (0.32, 0.06, P = 0.24, N = 859) |
rs12636822(C)/3:36329450 | intergenic | (0.16, 0.21, P = 7.8e-06, N = 1959) | (0.032, 0.16, P = 0.24, N = 859) |
rs383911(A)/3:41122345* | intergenic | (0.56, -0.013, P = 3e-06, N = 7824) | (0.33, -0.032, P = 0.54, N = 859) |
rs13075137(T)/3:4765093* | ITPR1 | (0.44, -0.024, P = 7.5e-06, N = 7824) | (0.23, 0.013, P = 0.82, N = 859) |
rs12494255(A)/3:99003734 | intergenic | (0.77, 0.031, P = 2.7e-06, N = 7824) | (0.8, -0.019, P = 0.74, N = 859) |
rs6833958(T)/4:125848110 | intergenic | (0.88, -0.27, P = 9.7e-07, N = 1959) | (0.84, -0.077, P = 0.24, N = 859) |
rs7668227(A)/4:187061084 | FAM149A | (0.9, 0.024, P = 7.9e-06, N = 7824) | (0.98, 0.16, P = 0.33, N = 859) |
rs9327595(A)/5:130492613* | HINT1 | (0.031, -0.042, P = 6.9e-07, N = 7824) | (0.23, -0.056, P = 0.34, N = 859) |
rs7356708(C)/5:130593723 | CDC42SE2 | (0.039, -0.042, P = 4.4e-08, N = 7824) | (0.6, -0.031, P = 0.53, N = 859) |
rs6596022(T)/5:130767121* | RAPGEF6 | (0.96, 0.045, P = 6.8e-09, N = 7824) | (0.57, 0.036, P = 0.46, N = 859) |
rs3805681(T)/5:131537860* | P4HA2 | (0.54, 0.03, P = 1e-28, N = 7824) | (0.75, 0.01, P = 0.86, N = 859) |
rs334902(C)/5:131586559* | P4HA2 | (0.44, 0.029, P = 8e-27, N = 7824) | (0.38, -0.031, P = 0.52, N = 859) |
rs11950562(A)/5:131652529* | SLC22A4 | (0.52, 0.036, P = 2.3e-41, N = 7824) | (0.74, -0.034, P = 0.54, N = 859) |
rs11385258(TA)/5:131748241 | C5orf56 | (0.35, 0.13, P = 4.9e-06, N = 1959) | (0.24, 0.12, P = 0.038, N = 859) |
rs803222(A)/5:132208468* | LEAP2 | (0.54, 0.011, P = 2.6e-05, N = 7824) | (0.31, 0.048, P = 0.35, N = 859) |
rs10491300(T)/5:136354227* | SPOCK1 | (0.083, 0.022, P = 4.5e-05, N = 7824) | (0.23, -0.06, P = 0.29, N = 859) |
rs2963485(T)/5:148452043* | CTC-529P8.1 | (0.19, -0.018, P = 1.1e-06, N = 7824) | (0.37, 0.013, P = 0.8, N = 859) |
rs283429(C)/5:153904147* | intergenic | (0.088, 0.022, P = 4.2e-05, N = 7824) | (0.31, -0.038, P = 0.45, N = 859) |
rs13355460(T)/5:157385133 | intergenic | (0.65, 0.024, P = 4.9e-05, N = 7824) | (0.53, -0.0023, P = 0.96, N = 859) |
rs10062095(A)/5:81900261* | intergenic | (0.77, 0.026, P = 4.3e-05, N = 7824) | (0.61, -0.021, P = 0.67, N = 859) |
rs73435033(T)/6:11172620 | RP3-510L9.1 | (0.14, -0.24, P = 3.2e-06, N = 1959) | (0.17, -0.11, P = 0.076, N = 859) |
rs4463295(A)/6:123016251 | PKIB | (0.57, 0.013, P = 1.6e-06, N = 7824) | (0.36, 0.0094, P = 0.85, N = 859) |
rs9464891(T)/6:16389631* | ATXN1 | (0.12, -0.25, P = 5e-06, N = 1959) | (0.23, 0.096, P = 0.087, N = 859) |
rs2213581(T)/6:32388546* | intergenic | (0.2, -0.026, P = 4e-05, N = 7824) | (0.22, 0.12, P = 0.033, N = 859) |
rs10947808(T)/6:39323615* | KIF6 | (0.81, -0.017, P = 1.2e-06, N = 7824) | (0.31, 0.00071, P = 0.99, N = 859) |
rs972224(C)/6:41210049 | TREML4 | (0.092, 0.022, P = 3.3e-05, N = 7824) | (0.3, -0.088, P = 0.1, N = 859) |
rs9504983(A)/6:6989041 | RP11-556O15.1 | (0.24, 0.15, P = 4.1e-06, N = 1959) | (0.052, -0.17, P = 0.13, N = 859) |
rs444190(T)/7:101862777 | CUX1 | (0.94, -0.35, P = 8.5e-06, N = 1959) | (0.83, 0.054, P = 0.4, N = 859) |
rs917402(T)/7:150969535 | SMARCD3 | (0.1, 0.23, P = 4.1e-06, N = 1959) | (0.013, -0.0089, P = 0.97, N = 859) |
rs10259781(A)/7:152867025 | intergenic | (0.046, 0.032, P = 3.5e-05, N = 7824) | (0.18, 0.019, P = 0.77, N = 859) |
rs4716609(T)/7:155269627* | CNPY1 | (0.21, 0.015, P = 1.2e-05, N = 7824) | (0.091, 0.1, P = 0.23, N = 859) |
rs13242809(A)/7:22746564 | intergenic | (0.27, -0.11, P = 6.7e-06, N = 1959) | (0.51, -0.05, P = 0.31, N = 859) |
rs59591051(A)/7:29877857 | WIPF3 | (0.15, 0.23, P = 8.2e-06, N = 1959) | (0.21, -0.066, P = 0.27, N = 859) |
rs11774655(T)/8:11271426 | C8orf12 | (0.075, 0.024, P = 4.3e-05, N = 7824) | (0.19, -0.016, P = 0.79, N = 859) |
rs10096893(A)/8:2254703* | intergenic | (0.68, 0.034, P = 1e-05, N = 7824) | (0.56, 0.11, P = 0.034, N = 859) |
rs17054370(T)/8:25669353* | intergenic | (0.92, 0.022, P = 2.5e-05, N = 7824) | (0.79, 0.0052, P = 0.93, N = 859) |
rs891404(A)/8:40276391* | intergenic | (0.48, 0.012, P = 7.5e-06, N = 7824) | (0.6, -0.019, P = 0.7, N = 859) |
rs13292819(A)/9:38227878 | intergenic | (0.11, 0.022, P = 2.7e-05, N = 7824) | (0.059, 0.15, P = 0.14, N = 859) |
rs10867534(T)/9:83054485 | intergenic | (0.22, 0.18, P = 7.4e-06, N = 1959) | (0.44, -0.053, P = 0.28, N = 859) |
rs2031970(T)/9:92204172 | intergenic | (0.23, -0.24, P = 9.8e-06, N = 1959) | (0.084, -0.094, P = 0.27, N = 859) |
rs9775485(T)/9:95611913 | ZNF484 | (0.59, -0.014, P = 2e-07, N = 7824) | (0.32, 0.037, P = 0.47, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 92 | -0.0013 (-0.14- 0.14) P=0.99 | 7.3 | 31 | 7.69 (0- 72.6) | NA | NA | -8.7e-05 P=0.99 |
MR-Egger | 92 | -0.00077 (-0.18- 0.17) P=0.99 | 7.3 | 31 | 7.69 (0- 72.6) | 99 | 0.24 | -8.7e-05 P=0.99 |
Weighted median | 92 | -0.11 (-0.35- 0.12) P=0.34 | 7.3 | 31 | 7.69 (0- 72.6) | NA | NA | -8.7e-05 P=0.99 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0 | 0.07 | -0.02 | 0.99 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 48 | 0.039 (-0.12- 0.2) P=0.62 | 12 | 29 | 9.84 (0- 83.7) | NA | NA | 0.001 P=0.94 |
MR-Egger | 48 | 0.034 (-0.18- 0.25) P=0.76 | 12 | 29 | 9.84 (0- 83.7) | 55 | 0.17 | 0.001 P=0.94 |
Weighted median | 48 | 0.064 (-0.16- 0.29) P=0.58 | 12 | 29 | 9.84 (0- 83.7) | NA | NA | 0.001 P=0.94 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.04 | 0.08 | 0.49 | 0.63 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Hexanoylcarnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs11184443(T)/1:105666096* | intergenic | (0.25, -0.015, P = 4e-05, N = 7824) | (0.32, 0.045, P = 0.38, N = 859) |
rs16852535(A)/1:230881658* | CAPN9 | (0.32, 0.016, P = 3.8e-06, N = 7824) | (0.54, -0.079, P = 0.11, N = 859) |
rs4649225(A)/1:233544651* | intergenic | (0.35, -0.014, P = 4.1e-05, N = 7824) | (0.23, 0.033, P = 0.56, N = 859) |
rs12060939(C)/1:74033051 | intergenic | (0.27, -0.014, P = 4.2e-05, N = 7824) | (0.21, 0.0058, P = 0.92, N = 859) |
rs10518500(T)/1:75808588* | SLC44A5 | (0.79, 0.016, P = 3.3e-06, N = 7824) | (0.96, 0.018, P = 0.88, N = 859) |
rs699683(A)/1:76172512* | RP4-682C21.5 | (0.066, 0.034, P = 5.4e-09, N = 7824) | (0.024, 0.036, P = 0.82, N = 859) |
rs11161521(T)/1:76216330* | ACADM | (0.7, 0.07, P = 6.4e-100, N = 7824) | (0.86, -0.13, P = 0.055, N = 859) |
rs56352044(T)/1:76248706 | RABGGTB | (0.23, -0.3, P = 9.1e-15, N = 1881) | (0.14, 0.15, P = 0.033, N = 859) |
rs5745331(A)/1:76273313* | MSH4 | (0.72, -0.048, P = 1.6e-45, N = 7824) | (0.89, 0.085, P = 0.27, N = 859) |
rs1144337(T)/1:76278877 | MSH4 | (0.1, 0.03, P = 2.6e-09, N = 7824) | (0.19, -0.061, P = 0.31, N = 859) |
rs1796810(T)/1:76403305 | intergenic | (0.29, 0.046, P = 5e-42, N = 7824) | (0.32, -0.0091, P = 0.86, N = 859) |
rs572200(T)/1:76724652* | ST6GALNAC3 | (0.21, -0.017, P = 4.9e-05, N = 7824) | (0.18, -0.024, P = 0.7, N = 859) |
rs11162212(A)/1:77256966* | intergenic | (0.43, 0.014, P = 1.4e-05, N = 7824) | (0.53, -0.046, P = 0.34, N = 859) |
rs228455(T)/1:79624739* | intergenic | (0.14, 0.036, P = 4.1e-05, N = 7824) | (0.31, 0.066, P = 0.21, N = 859) |
rs3738572(A)/1:85391140* | MCOLN2 | (0.46, 0.012, P = 1.4e-05, N = 7824) | (0.26, -0.028, P = 0.61, N = 859) |
rs4463806(C)/10:115597993* | DCLRE1A | (0.77, -0.18, P = 6e-06, N = 1881) | (0.81, 0.1, P = 0.1, N = 859) |
rs2242206(T)/10:61414011* | SLC16A9 | (0.26, 0.015, P = 2.3e-05, N = 7824) | (0.09, 0.076, P = 0.36, N = 859) |
rs1171615(T)/10:61469090* | SLC16A9 | (0.78, 0.025, P = 4e-11, N = 7824) | (0.76, 0.02, P = 0.73, N = 859) |
rs1998881(T)/10:8863208* | intergenic | (0.21, -0.017, P = 1.3e-06, N = 7824) | (0.2, -0.0023, P = 0.97, N = 859) |
rs17503531(T)/10:91732224* | intergenic | (0.096, 0.021, P = 3.3e-05, N = 7824) | (0.17, 0.018, P = 0.78, N = 859) |
rs12762813(A)/10:93461648* | intergenic | (0.12, -0.018, P = 3.7e-05, N = 7824) | (0.012, -0.21, P = 0.34, N = 859) |
rs76988133(G)/11:103471636 | intergenic | (0.061, -0.4, P = 1.2e-07, N = 1881) | (0.042, 0.084, P = 0.49, N = 859) |
rs1613187(G)/11:122430156 | intergenic | (0.8, 0.18, P = 8.7e-06, N = 1881) | (0.95, 0.0085, P = 0.94, N = 859) |
rs11224138(T)/11:134842214* | intergenic | (0.13, -0.041, P = 5.3e-06, N = 7824) | (0.11, 0.17, P = 0.034, N = 859) |
rs5806187(AAAT)/13:101608997 | NALCN-AS1 | (0.98, 0.38, P = 9.7e-06, N = 1881) | (0.85, -0.034, P = 0.62, N = 859) |
rs7991563(A)/13:43688013* | DNAJC15 | (0.8, -0.016, P = 2.7e-06, N = 7824) | (0.8, -0.024, P = 0.7, N = 859) |
rs9671614(C)/14:33037956* | AKAP6 | (0.44, 0.2, P = 6.7e-06, N = 1881) | (0.68, -0.0037, P = 0.94, N = 859) |
rs8022497(C)/14:87533611* | intergenic | (0.068, 0.025, P = 4.9e-05, N = 7824) | (0.086, -0.031, P = 0.72, N = 859) |
rs4779616(C)/15:33591069* | RP11-489D6.2 | (0.053, 0.03, P = 3.4e-05, N = 7824) | (0.036, 0.072, P = 0.56, N = 859) |
rs12915128(A)/15:68734922* | intergenic | (0.49, 0.027, P = 4.3e-05, N = 7824) | (0.81, 0.12, P = 0.048, N = 859) |
rs1368843(A)/15:94908904* | MCTP2 | (0.42, -0.014, P = 1.3e-05, N = 7824) | (0.34, 0.0079, P = 0.87, N = 859) |
rs3743527(T)/16:16235681* | ABCC1 | (0.22, 0.014, P = 4.7e-05, N = 7824) | (0.14, -0.032, P = 0.65, N = 859) |
rs36021(A)/16:55711950 | SLC6A2 | (0.53, -0.17, P = 2.1e-06, N = 1881) | (0.64, -0.062, P = 0.21, N = 859) |
rs8059932(A)/16:66155276* | intergenic | (0.08, -0.2, P = 9.8e-06, N = 1881) | (0.23, 0.039, P = 0.5, N = 859) |
rs75887526(GCA)/16:78196411* | WWOX | (0.23, -0.24, P = 1.7e-06, N = 1881) | (0.23, -0.047, P = 0.42, N = 859) |
rs12598663(T)/16:7846716* | intergenic | (0.93, 0.026, P = 3e-05, N = 7824) | (0.98, 0.052, P = 0.79, N = 859) |
rs3764247(A)/16:810039* | MSLN | (0.76, -0.017, P = 2.1e-05, N = 7824) | (0.75, 0.00053, P = 0.99, N = 859) |
rs8075029(G)/17:13395850* | HS3ST3A1 | (0.87, -0.22, P = 7.7e-07, N = 1881) | (0.99, -0.5, P = 0.014, N = 859) |
rs658591(T)/17:26610769 | KRT18P55 | (0.8, -0.019, P = 2e-06, N = 7824) | (0.63, -0.067, P = 0.18, N = 859) |
rs76620359(C)/19:55725087 | PTPRH | (0.054, 0.41, P = 2.7e-06, N = 1881) | (0.044, -0.15, P = 0.17, N = 859) |
rs10170989(T)/2:107177168* | intergenic | (0.81, 0.017, P = 3.3e-05, N = 7824) | (0.86, -0.008, P = 0.91, N = 859) |
rs10171649(C)/2:125399340* | CNTNAP5 | (0.056, 0.028, P = 2.5e-05, N = 7824) | (0.15, 0.056, P = 0.41, N = 859) |
rs10928415(A)/2:149553139 | intergenic | (0.76, 0.22, P = 3e-06, N = 1881) | (0.35, -0.022, P = 0.66, N = 859) |
rs3769423(A)/2:168872075* | STK39 | (0.019, 0.051, P = 9.8e-06, N = 7824) | (0.36, -0.0088, P = 0.86, N = 859) |
rs12987318(A)/2:19772919* | intergenic | (0.041, 0.034, P = 1.3e-05, N = 7824) | (0.084, -0.075, P = 0.4, N = 859) |
rs6705260(T)/2:205039136 | intergenic | (0.87, -0.25, P = 1.4e-06, N = 1881) | (0.97, -0.13, P = 0.34, N = 859) |
rs7579973(A)/2:34933627 | AC073218.2 | (0.61, -0.025, P = 3.2e-05, N = 7824) | (0.61, 0.0033, P = 0.95, N = 859) |
rs10164760(G)/2:62212279 | COMMD1 | (0.018, -0.61, P = 1.2e-06, N = 1881) | (0.36, 0.02, P = 0.69, N = 859) |
rs4671179(G)/2:67586247 | intergenic | (0.45, -0.15, P = 4.7e-06, N = 1881) | (0.37, 0.00051, P = 0.99, N = 859) |
rs113107938(G)/2:7630499 | intergenic | (0.018, 0.64, P = 1.3e-06, N = 1881) | (0.026, 0.17, P = 0.28, N = 859) |
rs1666769(T)/2:79224687* | intergenic | (0.67, 0.015, P = 1.4e-05, N = 7824) | (0.57, 0.0097, P = 0.85, N = 859) |
rs4669343(A)/2:8970482* | KIDINS220 | (0.98, 0.085, P = 1.7e-05, N = 7824) | (0.93, -0.095, P = 0.3, N = 859) |
rs143973511(T)/3:122452571* | PARP14 | (0.1, -0.26, P = 3.7e-06, N = 1881) | (0.049, 0.013, P = 0.91, N = 859) |
rs1348656(T)/3:144933520* | intergenic | (0.8, -0.015, P = 1.9e-05, N = 7824) | (0.61, 0.03, P = 0.56, N = 859) |
rs17189202(A)/3:181986146* | intergenic | (0.13, 0.031, P = 1.6e-05, N = 7824) | (0.024, 0.014, P = 0.93, N = 859) |
rs1682962(A)/3:3834752* | SUMF1 | (0.58, 0.028, P = 2.2e-05, N = 7824) | (0.11, -0.18, P = 0.019, N = 859) |
rs4074087(A)/3:4681908* | ITPR1 | (0.07, 0.048, P = 2.1e-05, N = 7824) | (0.18, 0.05, P = 0.42, N = 859) |
rs2070630(C)/4:159644494* | PPID | (0.29, -0.021, P = 6.8e-10, N = 7824) | (0.29, -0.047, P = 0.38, N = 859) |
rs6536381(T)/4:159882193* | C4orf45 | (0.3, 0.014, P = 2.2e-05, N = 7824) | (0.17, 0.029, P = 0.64, N = 859) |
rs6553778(T)/4:168351130* | intergenic | (0.23, -0.017, P = 1.2e-06, N = 7824) | (0.28, 0.017, P = 0.75, N = 859) |
rs4863170(C)/4:190333580* | intergenic | (0.37, -0.15, P = 5.6e-06, N = 1881) | (0.31, 0.028, P = 0.59, N = 859) |
rs11728264(T)/4:29777582* | intergenic | (0.24, -0.015, P = 2.8e-05, N = 7824) | (0.74, -0.066, P = 0.23, N = 859) |
rs1477626(A)/5:101329818 | intergenic | (0.55, -0.026, P = 2.3e-05, N = 7824) | (0.33, -0.066, P = 0.21, N = 859) |
rs3776418(A)/5:10708871* | DAP | (0.067, 0.024, P = 4.3e-05, N = 7824) | (0.047, 0.0086, P = 0.94, N = 859) |
rs7716905(A)/5:131324377* | ACSL6 | (0.96, 0.035, P = 2.2e-05, N = 7824) | (0.59, -0.046, P = 0.34, N = 859) |
rs7705189(A)/5:131623358* | P4HA2 | (0.51, 0.019, P = 1.6e-08, N = 7824) | (0.72, -0.13, P = 0.015, N = 859) |
rs272869(A)/5:131677997* | SLC22A4 | (0.37, 0.022, P = 1.4e-11, N = 7824) | (0.27, 0.11, P = 0.046, N = 859) |
rs439787(T)/5:132882522* | FSTL4 | (0.63, 0.025, P = 4.7e-05, N = 7824) | (0.51, 0.0037, P = 0.94, N = 859) |
rs3798138(A)/5:136983954* | KLHL3 | (0.023, -0.042, P = 4.1e-05, N = 7824) | (0.27, 0.11, P = 0.04, N = 859) |
rs371846(T)/5:142188049* | ARHGAP26 | (0.082, -0.025, P = 2.1e-05, N = 7824) | (0.25, -0.019, P = 0.73, N = 859) |
rs11135316(A)/5:163939367* | CTC-340A15.2 | (0.73, 0.028, P = 4e-05, N = 7824) | (0.6, -0.047, P = 0.33, N = 859) |
rs1540603(A)/5:17220275* | BASP1 | (0.012, -0.11, P = 1.2e-05, N = 7824) | (0.017, -0.39, P = 0.037, N = 859) |
rs2002548(T)/5:173150415 | CTB-43E15.3 | (0.26, -0.14, P = 5.6e-06, N = 1881) | (0.28, 0.053, P = 0.33, N = 859) |
rs13355979(A)/5:32984015* | CTD-2066L21.3 | (0.57, -0.014, P = 3.7e-05, N = 7824) | (0.15, -0.047, P = 0.48, N = 859) |
rs12521153(A)/5:52788201* | intergenic | (0.32, 0.16, P = 7.6e-06, N = 1881) | (0.27, 0.13, P = 0.015, N = 859) |
rs6861760(T)/5:557551 | intergenic | (0.025, 0.31, P = 4.4e-06, N = 1881) | (0.28, 0.084, P = 0.12, N = 859) |
rs7734050(T)/5:57173905* | intergenic | (0.73, 0.014, P = 4.2e-05, N = 7824) | (0.65, -0.003, P = 0.95, N = 859) |
rs1104684(G)/5:70968915 | intergenic | (0.47, -0.14, P = 9.1e-06, N = 1881) | (0.83, -0.11, P = 0.084, N = 859) |
rs4131193(A)/5:7583327* | ADCY2 | (0.31, 0.014, P = 2.2e-05, N = 7824) | (0.56, -0.04, P = 0.42, N = 859) |
rs10079045(A)/5:90266322 | GPR98 | (0.26, 0.17, P = 2.1e-06, N = 1881) | (0.66, -0.081, P = 0.12, N = 859) |
rs170734(A)/5:98147041* | intergenic | (0.73, -0.015, P = 6.8e-06, N = 7824) | (0.69, -0.016, P = 0.76, N = 859) |
rs10053087(C)/5:9920412* | intergenic | (0.033, 0.034, P = 4.2e-05, N = 7824) | (0.27, -0.066, P = 0.23, N = 859) |
rs7745587(A)/6:108010940* | intergenic | (0.74, -0.016, P = 6.7e-06, N = 7824) | (0.87, -0.08, P = 0.25, N = 859) |
rs11753995(A)/6:160575366* | SLC22A1 | (0.16, -0.023, P = 7.2e-08, N = 7824) | (0.033, 0.013, P = 0.92, N = 859) |
rs76002427(G)/6:164386971 | intergenic | (0.078, -0.28, P = 7.5e-07, N = 1881) | (0.029, -0.26, P = 0.082, N = 859) |
rs3846828(A)/6:24282117* | DCDC2 | (0.1, 0.021, P = 3.2e-05, N = 7824) | (0.069, -0.038, P = 0.7, N = 859) |
rs2071538(A)/6:32818678* | TAP1 | (0.23, 0.015, P = 1.7e-05, N = 7824) | (0.026, -0.093, P = 0.53, N = 859) |
rs9380734(C)/6:38293199 | BTBD9 | (0.02, -0.69, P = 7e-06, N = 1881) | (0.27, 0.055, P = 0.31, N = 859) |
rs9352088(C)/6:74987577* | RP11-554D15.1 | (0.75, -0.033, P = 3.1e-05, N = 7824) | (0.56, 0.036, P = 0.46, N = 859) |
rs884760(T)/6:8363853* | intergenic | (0.28, 0.014, P = 3e-05, N = 7824) | (0.72, 0.00033, P = 1, N = 859) |
rs4584058(A)/7:44132340* | intergenic | (0.35, -0.015, P = 1.1e-05, N = 7824) | (0.56, -0.051, P = 0.29, N = 859) |
rs10280701(T)/7:83627847* | SEMA3A | (0.21, 0.015, P = 1.3e-05, N = 7824) | (0.076, 0.092, P = 0.3, N = 859) |
rs10095671(T)/8:133378663* | KCNQ3 | (0.91, -0.024, P = 4e-06, N = 7824) | (0.86, -0.00023, P = 1, N = 859) |
rs145011241(GGAGT)/8:144238923 | LY6H | (0.41, -0.21, P = 7.2e-06, N = 1881) | (0.47, 0.049, P = 0.31, N = 859) |
rs11990475(A)/8:25954842* | intergenic | (0.9, -0.022, P = 1.9e-05, N = 7824) | (0.85, 0.059, P = 0.37, N = 859) |
rs10096903(T)/8:85661097* | RALYL | (0.25, 0.015, P = 2e-05, N = 7824) | (0.4, -0.044, P = 0.38, N = 859) |
rs11990096(A)/8:9195378* | RP11-115J16.1 | (0.22, -0.029, P = 2.8e-05, N = 7824) | (0.42, 0.03, P = 0.55, N = 859) |
rs2915420(T)/9:103955550* | LPPR1 | (0.16, -0.02, P = 2.1e-06, N = 7824) | (0.17, 0.076, P = 0.25, N = 859) |
rs3132311(A)/9:137430554* | RP11-473E2.4 | (0.21, 0.014, P = 4.4e-05, N = 7824) | (0.037, -0.042, P = 0.74, N = 859) |
rs79368155(T)/9:18097804* | intergenic | (0.047, 0.39, P = 6.2e-06, N = 1881) | (0.01, -0.00031, P = 1, N = 859) |
rs12340115(A)/9:8281308* | intergenic | (0.99, 0.11, P = 3.6e-05, N = 7824) | (0.91, -0.088, P = 0.28, N = 859) |
rs11141474(A)/9:89272127* | RP11-395D3.1 | (0.28, -0.014, P = 4.6e-05, N = 7824) | (0.17, -0.073, P = 0.25, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 102 | -0.046 (-0.13- 0.038) P=0.28 | 8 | 38 | 0 (0- 70.4) | NA | NA | -0.0052 P=0.51 |
MR-Egger | 102 | -0.027 (-0.13- 0.072) P=0.59 | 8 | 38 | 0 (0- 70.4) | 112 | 0.2 | -0.0052 P=0.51 |
Weighted median | 102 | -0.06 (-0.17- 0.054) P=0.3 | 8 | 38 | 0 (0- 70.4) | NA | NA | -0.0052 P=0.51 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.05 | 0.04 | -1.07 | 0.28 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 24 | -0.046 (-0.14- 0.049) P=0.34 | 21 | 26 | 0 (0- 80.7) | NA | NA | 0.012 P=0.55 |
MR-Egger | 24 | -0.078 (-0.22- 0.064) P=0.29 | 21 | 26 | 0 (0- 80.7) | 28 | 0.18 | 0.012 P=0.55 |
Weighted median | 24 | -0.066 (-0.18- 0.052) P=0.27 | 21 | 26 | 0 (0- 80.7) | NA | NA | 0.012 P=0.55 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.05 | 0.05 | -0.95 | 0.35 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-Octanoylcarnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs11184443(T)/1:105666096* | intergenic | (0.25, -0.019, P = 1.4e-05, N = 7824) | (0.32, 0.045, P = 0.38, N = 859) |
rs857703(A)/1:158687224* | OR6K3 | (0.38, 0.014, P = 4.1e-05, N = 7824) | (0.13, 0.12, P = 0.11, N = 859) |
rs332765(T)/1:174655782* | RABGAP1L | (0.36, 0.13, P = 2.4e-06, N = 1948) | (0.9, -0.075, P = 0.34, N = 859) |
rs7552404(A)/1:76135946* | intergenic | (0.7, 0.075, P = 1.3e-77, N = 7824) | (0.83, -0.12, P = 0.061, N = 859) |
rs699683(A)/1:76172512* | RP4-682C21.5 | (0.067, 0.047, P = 5.4e-11, N = 7824) | (0.024, 0.036, P = 0.82, N = 859) |
rs12130832(T)/1:76234294* | ACADM | (0.71, -0.049, P = 5.4e-33, N = 7824) | (0.79, 0.0095, P = 0.87, N = 859) |
rs56352044(T)/1:76248706 | RABGGTB | (0.23, -0.3, P = 9.1e-15, N = 1948) | (0.14, 0.15, P = 0.033, N = 859) |
rs1144337(T)/1:76278877 | MSH4 | (0.1, 0.044, P = 3.3e-14, N = 7824) | (0.19, -0.061, P = 0.31, N = 859) |
rs1796810(T)/1:76403305 | intergenic | (0.29, 0.045, P = 6.1e-28, N = 7824) | (0.32, -0.0091, P = 0.86, N = 859) |
rs185292654(T)/1:76465955 | intergenic | (0.035, 0.55, P = 1.4e-06, N = 1948) | (0.026, 0.0014, P = 0.99, N = 859) |
rs4463806(C)/10:115597993* | DCLRE1A | (0.77, -0.18, P = 6e-06, N = 1948) | (0.81, 0.1, P = 0.1, N = 859) |
rs7894167(C)/10:47556919* | intergenic | (0.38, 0.17, P = 3.8e-06, N = 1948) | (0.52, 0.1, P = 0.037, N = 859) |
rs1998881(T)/10:8863208* | intergenic | (0.21, -0.017, P = 5e-05, N = 7824) | (0.2, -0.0023, P = 0.97, N = 859) |
rs17503531(T)/10:91732224* | intergenic | (0.096, 0.024, P = 4.2e-05, N = 7824) | (0.17, 0.018, P = 0.78, N = 859) |
rs582119(T)/11:107443420 | intergenic | (0.38, -0.015, P = 3.1e-05, N = 7824) | (0.48, 0.024, P = 0.62, N = 859) |
rs4757051(A)/11:20333248* | intergenic | (0.72, -0.018, P = 1.9e-05, N = 7824) | (0.43, 0.11, P = 0.027, N = 859) |
rs6485709(T)/11:46934309* | LRP4 | (0.011, 0.13, P = 5.3e-06, N = 7824) | (0.041, 0.14, P = 0.25, N = 859) |
rs7130402(A)/11:48115606* | PTPRJ | (0.93, 0.032, P = 9.9e-06, N = 7824) | (0.91, -0.013, P = 0.88, N = 859) |
rs1480639(T)/12:29014476 | intergenic | (0.57, -0.015, P = 3e-05, N = 7824) | (0.73, -0.031, P = 0.57, N = 859) |
rs7973509(A)/12:40354147* | SLC2A13 | (0.27, -0.018, P = 1.7e-05, N = 7824) | (0.097, 0.042, P = 0.61, N = 859) |
rs7334793(T)/13:106512641 | intergenic | (0.5, -0.015, P = 8e-06, N = 7824) | (0.39, 0.031, P = 0.53, N = 859) |
rs1446791(A)/13:85194772* | intergenic | (0.17, -0.037, P = 2e-05, N = 7824) | (0.33, -0.061, P = 0.26, N = 859) |
rs8012258(T)/14:104991128 | TMEM179 | (0.53, -0.014, P = 4.2e-05, N = 7824) | (0.33, -0.0044, P = 0.93, N = 859) |
rs8003176(T)/14:88760692* | KCNK10 | (0.77, 0.033, P = 4.5e-05, N = 7824) | (0.9, 0.076, P = 0.34, N = 859) |
rs11848217(G)/14:93048314* | RIN3 | (0.24, -0.18, P = 7.1e-06, N = 1948) | (0.33, -0.029, P = 0.58, N = 859) |
rs1801591(A)/15:76578762* | ETFA | (0.09, 0.029, P = 3.4e-05, N = 7824) | (0.013, -0.1, P = 0.62, N = 859) |
rs3816282(A)/15:79350840* | RASGRF1 | (0.91, 0.041, P = 1.9e-05, N = 7824) | (0.94, 0.23, P = 0.025, N = 859) |
rs2379991(T)/15:83445338* | FSD2 | (0.28, 0.017, P = 4.6e-05, N = 7824) | (0.45, 0.0029, P = 0.95, N = 859) |
rs924135(A)/16:16123459* | ABCC1 | (0.38, -0.021, P = 1.1e-09, N = 7824) | (0.53, -0.06, P = 0.21, N = 859) |
rs45512591(C)/16:16147264* | ABCC1 | (0.28, -0.23, P = 4.7e-08, N = 1948) | (0.37, -0.056, P = 0.26, N = 859) |
rs3743527(T)/16:16235681* | ABCC1 | (0.22, 0.019, P = 4.7e-06, N = 7824) | (0.14, -0.032, P = 0.65, N = 859) |
rs2239323(A)/16:16278695 | ABCC6 | (0.5, 0.015, P = 2.6e-05, N = 7824) | (0.65, 0.04, P = 0.44, N = 859) |
rs79825592(T)/16:73692861 | intergenic | (0.16, 0.28, P = 3.1e-06, N = 1948) | (0.026, -0.14, P = 0.36, N = 859) |
rs2133336(A)/17:8313854* | NDEL1 | (0.4, 0.015, P = 9.6e-06, N = 7824) | (0.17, -0.029, P = 0.65, N = 859) |
rs2156436(T)/18:57457267* | intergenic | (0.031, 0.12, P = 2.5e-05, N = 7824) | (0.23, -0.027, P = 0.64, N = 859) |
rs888860(A)/19:35465187* | intergenic | (0.35, -0.018, P = 9.4e-07, N = 7824) | (0.1, 0.19, P = 0.021, N = 859) |
rs7246133(T)/19:53162102* | ZNF83 | (0.66, 0.021, P = 9.5e-06, N = 7824) | (0.48, -0.0079, P = 0.87, N = 859) |
rs7255657(A)/19:55902257* | RPL28 | (0.93, 0.03, P = 3.7e-05, N = 7824) | (0.76, -0.073, P = 0.18, N = 859) |
rs10170989(T)/2:107177168* | intergenic | (0.81, 0.02, P = 4.8e-05, N = 7824) | (0.86, -0.008, P = 0.91, N = 859) |
rs1542341(T)/2:125383522* | CNTNAP5 | (0.94, -0.034, P = 2.5e-05, N = 7824) | (0.8, -0.04, P = 0.51, N = 859) |
rs10203979(C)/2:179022751* | intergenic | (0.23, 0.18, P = 3.4e-06, N = 1948) | (0.36, -0.074, P = 0.14, N = 859) |
rs11885860(T)/2:180398739* | ZNF385B | (0.93, -0.036, P = 3.9e-05, N = 7824) | (0.95, 0.076, P = 0.49, N = 859) |
rs6531077(A)/2:18237570* | KCNS3 | (0.46, 0.015, P = 1.2e-05, N = 7824) | (0.8, -0.016, P = 0.79, N = 859) |
rs4672596(T)/2:211648806* | intergenic | (0.4, 0.015, P = 9.6e-06, N = 7824) | (0.44, -0.026, P = 0.58, N = 859) |
rs4675009(A)/2:226660503* | intergenic | (0.82, 0.21, P = 3.6e-06, N = 1948) | (0.82, -0.094, P = 0.14, N = 859) |
rs17258702(A)/2:230764226* | TRIP12 | (0.23, -0.017, P = 4.7e-05, N = 7824) | (0.036, 0.19, P = 0.15, N = 859) |
rs2720162(T)/2:231629360* | CAB39 | (0.61, -0.015, P = 7.3e-06, N = 7824) | (0.88, -0.12, P = 0.086, N = 859) |
rs4241312(T)/2:3252636* | TSSC1 | (0.48, 0.015, P = 1.6e-05, N = 7824) | (0.38, 0.0095, P = 0.85, N = 859) |
rs2290101(C)/2:33952055* | MYADML | (0.34, 0.017, P = 2.7e-05, N = 7824) | (0.44, -0.11, P = 0.025, N = 859) |
rs112844005(T)/2:44684630* | CAMKMT | (0.05, 0.31, P = 9.7e-06, N = 1948) | (0.043, -0.018, P = 0.87, N = 859) |
rs6077844(A)/20:10579996* | SLX4IP | (0.42, 0.014, P = 2.5e-05, N = 7824) | (0.35, -0.08, P = 0.12, N = 859) |
rs1203869(T)/20:22533223* | LINC00261 | (0.015, 0.092, P = 4.9e-05, N = 7824) | (0.15, -0.056, P = 0.39, N = 859) |
rs542126572(GT)/20:32973901 | ITCH | (0.036, -0.23, P = 2e-06, N = 1948) | (0.015, -0.026, P = 0.9, N = 859) |
rs9979265(T)/21:29692982 | intergenic | (0.45, 0.014, P = 4.2e-05, N = 7824) | (0.56, -0.014, P = 0.78, N = 859) |
rs2776278(A)/21:37342699* | RUNX1 | (0.23, -0.017, P = 4.9e-05, N = 7824) | (0.26, -0.00052, P = 0.99, N = 859) |
rs2835328(A)/21:37622915* | DOPEY2 | (0.69, 0.018, P = 1.2e-05, N = 7824) | (0.83, -0.019, P = 0.77, N = 859) |
rs4239866(T)/22:17788722* | intergenic | (0.39, -0.029, P = 2.9e-05, N = 7824) | (0.11, -0.047, P = 0.54, N = 859) |
rs5755595(T)/22:35518839* | CTA-714B7.5 | (0.27, 0.24, P = 3.3e-06, N = 1948) | (0.055, 0.1, P = 0.35, N = 859) |
rs16855296(T)/3:144082862* | intergenic | (0.052, 0.038, P = 3.2e-05, N = 7824) | (0.016, -0.047, P = 0.8, N = 859) |
rs17756228(T)/3:172371929* | NCEH1 | (0.49, -0.014, P = 3.8e-05, N = 7824) | (0.39, 0.07, P = 0.17, N = 859) |
rs6443446(G)/3:177049627* | intergenic | (0.66, 0.15, P = 3.1e-06, N = 1948) | (0.95, 0.042, P = 0.69, N = 859) |
rs331869(T)/3:255395 | CHL1 | (0.98, -0.13, P = 7.8e-07, N = 7824) | (0.81, -0.061, P = 0.32, N = 859) |
rs4402896(T)/3:29848896* | RBMS3 | (0.56, 0.015, P = 1.8e-05, N = 7824) | (0.61, -0.096, P = 0.051, N = 859) |
rs1682962(A)/3:3834752* | SUMF1 | (0.58, 0.03, P = 3.7e-05, N = 7824) | (0.11, -0.18, P = 0.019, N = 859) |
rs12503954(A)/4:113916575* | RP11-650J17.1 | (0.29, -0.019, P = 2.1e-05, N = 7824) | (0.6, -0.083, P = 0.095, N = 859) |
rs7663005(T)/4:142092124* | RNF150 | (0.5, -0.014, P = 4.2e-05, N = 7824) | (0.093, 0.044, P = 0.61, N = 859) |
rs4835221(T)/4:146248122* | intergenic | (0.7, -0.03, P = 2.6e-05, N = 7824) | (0.78, -0.00026, P = 1, N = 859) |
rs956974(A)/4:156443527 | RP13-487K5.1 | (0.55, -0.014, P = 5e-05, N = 7824) | (0.8, 0.0081, P = 0.89, N = 859) |
rs35055965(T)/4:159193901* | RP11-597D13.7 | (0.24, -0.23, P = 3.6e-09, N = 1948) | (0.16, -0.023, P = 0.72, N = 859) |
rs8396(T)/4:159630817* | PPID | (0.7, 0.048, P = 1.4e-31, N = 7824) | (0.65, 0.014, P = 0.78, N = 859) |
rs10003821(T)/4:159877388* | C4orf45 | (0.36, -0.025, P = 6.6e-10, N = 7824) | (0.35, -0.0021, P = 0.97, N = 859) |
rs1347066(T)/4:159949116* | C4orf45 | (0.54, 0.015, P = 2.1e-05, N = 7824) | (0.54, 0.031, P = 0.52, N = 859) |
rs6857595(T)/4:187011126 | TLR3 | (0.28, 0.15, P = 9.6e-06, N = 1948) | (0.31, 0.022, P = 0.66, N = 859) |
rs9790569(T)/4:46734416* | COX7B2 | (0.18, -0.2, P = 9.3e-06, N = 1948) | (0.14, -0.096, P = 0.17, N = 859) |
rs17157494(A)/5:104409021* | CTD-2374C24.1 | (0.074, 0.029, P = 2.2e-05, N = 7824) | (0.03, -0.16, P = 0.25, N = 859) |
rs274567(T)/5:131714409* | SLC22A5 | (0.37, 0.016, P = 3.9e-06, N = 7824) | (0.3, 0.049, P = 0.35, N = 859) |
rs419418(T)/5:142175364* | ARHGAP26 | (0.92, 0.029, P = 4.7e-05, N = 7824) | (0.76, 0.028, P = 0.62, N = 859) |
rs1995777(T)/5:32987956* | CTD-2066L21.3 | (0.56, -0.014, P = 4.7e-05, N = 7824) | (0.22, -0.04, P = 0.49, N = 859) |
rs10940072(A)/5:65916784 | MAST4 | (0.39, -0.015, P = 1.2e-05, N = 7824) | (0.31, 0.1, P = 0.052, N = 859) |
rs1053657(T)/6:138734422* | HEBP2 | (0.13, 0.023, P = 4.8e-05, N = 7824) | (0.54, 0.01, P = 0.83, N = 859) |
rs13198822(T)/6:165806518* | PDE10A | (0.35, -0.014, P = 3.5e-05, N = 7824) | (0.15, -0.039, P = 0.57, N = 859) |
rs2989521(G)/6:167804569 | intergenic | (0.59, -0.16, P = 7.6e-06, N = 1948) | (0.82, 0.12, P = 0.061, N = 859) |
rs6907864(T)/6:24293324* | DCDC2 | (0.11, 0.026, P = 5.8e-06, N = 7824) | (0.14, 0.02, P = 0.78, N = 859) |
rs212934(T)/6:25537934* | LRRC16A | (0.39, -0.014, P = 3.8e-05, N = 7824) | (0.34, 0.095, P = 0.065, N = 859) |
rs9352088(C)/6:74987577* | RP11-554D15.1 | (0.75, -0.036, P = 3.3e-05, N = 7824) | (0.56, 0.036, P = 0.46, N = 859) |
rs884760(T)/6:8363853* | intergenic | (0.28, 0.019, P = 7.2e-06, N = 7824) | (0.72, 0.00033, P = 1, N = 859) |
rs6968131(T)/7:138468569* | ATP6V0A4 | (0.99, -0.19, P = 4.9e-05, N = 7824) | (0.87, -0.0073, P = 0.92, N = 859) |
rs7795715(A)/7:154639804* | DPP6 | (0.86, -0.024, P = 1.3e-05, N = 7824) | (0.82, -0.03, P = 0.64, N = 859) |
rs10235922(C)/7:155247106* | EN2 | (0.91, -0.03, P = 1.7e-05, N = 7824) | (0.93, -0.03, P = 0.75, N = 859) |
rs10224131(A)/7:35200804* | DPY19L2P1 | (0.42, -0.017, P = 3e-05, N = 7824) | (0.48, 0.082, P = 0.088, N = 859) |
rs12718664(A)/7:52527761 | intergenic | (0.59, -0.015, P = 2.4e-05, N = 7824) | (0.31, -0.055, P = 0.29, N = 859) |
rs2072454(T)/7:55214348* | EGFR | (0.54, -0.014, P = 4.9e-05, N = 7824) | (0.5, 0.052, P = 0.28, N = 859) |
rs7787623(T)/7:75404761* | CCL26 | (0.25, -0.043, P = 3.1e-05, N = 7824) | (0.43, 0.017, P = 0.72, N = 859) |
rs38558(T)/7:81884548* | CACNA2D1 | (0.74, -0.018, P = 2e-05, N = 7824) | (0.93, -0.22, P = 0.015, N = 859) |
rs7004977(T)/8:98483422* | intergenic | (0.82, 0.025, P = 4.9e-05, N = 7824) | (0.81, 0.058, P = 0.34, N = 859) |
rs140294778(TC)/9:101327543* | GABBR2 | (0.2, -0.18, P = 9.2e-06, N = 1948) | (0.022, -0.11, P = 0.53, N = 859) |
rs76592182(C)/9:118487530 | intergenic | (0.028, 0.58, P = 1.2e-06, N = 1948) | (0.06, 0.085, P = 0.4, N = 859) |
rs6475272(T)/9:18949249* | FAM154A | (0.23, -0.018, P = 2.2e-05, N = 7824) | (0.067, 0.0017, P = 0.99, N = 859) |
rs11143623(A)/9:76183000* | intergenic | (0.62, 0.014, P = 3.5e-05, N = 7824) | (0.25, 0.072, P = 0.22, N = 859) |
rs10868458(A)/9:89277187* | RP11-395D3.1 | (0.35, -0.017, P = 1.9e-06, N = 7824) | (0.15, -0.068, P = 0.3, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 100 | -0.029 (-0.17- 0.11) P=0.68 | 7.3 | 31 | 9.22 (0- 79.2) | NA | NA | -0.01 P=0.22 |
MR-Egger | 100 | 0.034 (-0.14- 0.21) P=0.69 | 7.3 | 31 | 9.22 (0- 79.2) | 115 | 0.11 | -0.01 P=0.22 |
Weighted median | 100 | 0.11 (-0.098- 0.33) P=0.29 | 7.3 | 31 | 9.22 (0- 79.2) | NA | NA | -0.01 P=0.22 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.03 | 0.07 | -0.41 | 0.68 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 19 | -0.092 (-0.3- 0.11) P=0.38 | 13 | 12 | 17.3 (0- 72.3) | NA | NA | -0.0099 P=0.55 |
MR-Egger | 19 | -0.051 (-0.3- 0.19) P=0.69 | 13 | 12 | 17.3 (0- 72.3) | 17 | 0.44 | -0.0099 P=0.55 |
Weighted median | 19 | 0.12 (-0.18- 0.42) P=0.44 | 13 | 12 | 17.3 (0- 72.3) | NA | NA | -0.0099 P=0.55 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.09 | 0.1 | -0.88 | 0.39 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Ureidopropionic acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs75277555(T)/1:92235001 | TGFBR3 | (0.072, 0.16, P = 4e-06, N = 1956) | (0.047, -0.008, P = 0.94, N = 859) |
rs8013355(C)/14:52871418 | intergenic | (0.32, 0.16, P = 1.7e-06, N = 1956) | (0.48, -0.013, P = 0.78, N = 859) |
rs555045773(GA)/15:54319379 | UNC13C | (0.15, -1.1, P = 6.2e-06, N = 1956) | (0.26, -0.069, P = 0.2, N = 859) |
rs59930743(C)/17:3393604 | ASPA | (0.22, 0.18, P = 2.8e-06, N = 1956) | (0.29, 0.013, P = 0.81, N = 859) |
rs56104151(T)/18:61129481 | intergenic | (0.17, 0.15, P = 8.1e-06, N = 1956) | (0.35, 0.031, P = 0.53, N = 859) |
rs78734409(A)/2:12335302 | AC096559.1 | (0.038, 0.51, P = 3e-06, N = 1956) | (0.025, 0.14, P = 0.37, N = 859) |
rs71394795(GTTTA)/2:12355843 | AC096559.1 | (0.034, 0.19, P = 4.9e-07, N = 1956) | (0.66, 0.016, P = 0.76, N = 859) |
rs13427576(T)/2:56523619 | CCDC85A | (0.12, 0.16, P = 9e-06, N = 1956) | (0.22, 0.0034, P = 0.95, N = 859) |
rs11704820(G)/22:24912248 | UPB1 | (0.43, 0.16, P = 4.3e-07, N = 1956) | (0.32, 0.0044, P = 0.93, N = 859) |
rs77020847(G)/3:150016629 | intergenic | (0.013, 0.24, P = 2.1e-06, N = 1956) | (0.014, 0.074, P = 0.71, N = 859) |
rs6788347(C)/3:37754694* | ITGA9 | (0.5, 0.19, P = 4e-06, N = 1956) | (0.52, 0.081, P = 0.1, N = 859) |
rs4698029(G)/4:10312798* | intergenic | (0.19, -0.39, P = 3.5e-17, N = 1956) | (0.21, -0.033, P = 0.56, N = 859) |
rs13135526(A)/4:128932595* | C4orf29 | (0.51, -0.08, P = 9.1e-06, N = 1956) | (0.61, 0.057, P = 0.25, N = 859) |
rs2725772(T)/4:140438033* | SETD7 | (0.84, 0.21, P = 8.9e-08, N = 1956) | (0.54, 0.08, P = 0.093, N = 859) |
rs11735831(A)/4:9951591* | SLC2A9 | (0.22, -0.43, P = 1.4e-23, N = 1956) | (0.45, -0.029, P = 0.54, N = 859) |
rs33379(C)/5:171099634* | intergenic | (0.44, 0.16, P = 4e-06, N = 1956) | (0.77, -0.033, P = 0.58, N = 859) |
rs76129636(G)/6:130978833 | intergenic | (0.12, -0.41, P = 9.6e-06, N = 1956) | (0.26, -0.0077, P = 0.89, N = 859) |
rs113133874(T)/6:33379903 | PHF1 | (0.11, -0.42, P = 7e-06, N = 1956) | (0.021, -0.051, P = 0.76, N = 859) |
rs56286439(C)/7:14307105 | DGKB | (0.2, -0.13, P = 4.8e-06, N = 1956) | (0.82, -0.0045, P = 0.94, N = 859) |
rs2352451(G)/8:112781984 | intergenic | (0.74, 0.18, P = 5.3e-06, N = 1956) | (0.78, -0.073, P = 0.21, N = 859) |
rs7006208(A)/8:124157948 | TBC1D31 | (0.17, -0.96, P = 8e-06, N = 1956) | (0.26, -0.087, P = 0.11, N = 859) |
rs74795659(A)/8:73633099 | KCNB2 | (0.068, 0.15, P = 9e-06, N = 1956) | (0.023, 0.24, P = 0.12, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 22 | 0.078 (0.032- 0.12) P=0.00087 | 97 | 87 | 0 (0- 30.6) | NA | NA | -0.0057 P=0.77 |
MR-Egger | 22 | 0.089 (-0.0047- 0.18) P=0.077 | 97 | 87 | 0 (0- 30.6) | 11 | 0.93 | -0.0057 P=0.77 |
Weighted median | 22 | 0.068 (-0.02- 0.16) P=0.13 | 97 | 87 | 0 (0- 30.6) | NA | NA | -0.0057 P=0.77 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.08 | 0.02 | 3.33 | 0 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 16 | 0.07 (0.029- 0.11) P=0.00097 | 113 | 71 | 0 (0- 0) | NA | NA | -0.011 P=0.64 |
MR-Egger | 16 | 0.088 (-0.011- 0.19) P=0.1 | 113 | 71 | 0 (0- 0) | 5.4 | 0.98 | -0.011 P=0.64 |
Weighted median | 16 | 0.068 (-0.028- 0.17) P=0.16 | 113 | 71 | 0 (0- 0) | NA | NA | -0.011 P=0.64 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.07 | 0.02 | 3.3 | 0 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Aminoadipic acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs75602737(C)/1:112433228 | KCND3 | (0.09, -0.24, P = 3.5e-07, N = 1829) | (0.049, 0.17, P = 0.12, N = 859) |
rs16860185(A)/1:162294070* | NOS1AP | (0.099, 0.26, P = 6.7e-06, N = 1829) | (0.012, 0.28, P = 0.22, N = 859) |
rs6689907(T)/1:201701481 | NAV1 | (0.41, 0.2, P = 7.6e-06, N = 1829) | (0.37, 0.054, P = 0.28, N = 859) |
rs78186327(A)/1:26304015 | PAFAH2 | (0.27, -0.24, P = 7.8e-06, N = 1829) | (0.034, 0.16, P = 0.21, N = 859) |
rs61783628(T)/1:29209107 | EPB41 | (0.34, -0.18, P = 1.9e-06, N = 1829) | (0.1, -0.097, P = 0.22, N = 859) |
rs12414405(T)/10:12160108 | DHTKD1 | (0.11, -0.26, P = 2.5e-07, N = 1829) | (0.021, -0.051, P = 0.76, N = 859) |
rs12925619(C)/16:13529326 | U91319.1 | (0.9, -0.3, P = 7.3e-06, N = 1829) | (0.98, -0.32, P = 0.033, N = 859) |
rs1484093(T)/18:35705672 | intergenic | (0.71, 0.14, P = 8.4e-06, N = 1829) | (0.95, -0.22, P = 0.055, N = 859) |
rs9964369(T)/18:3773106 | DLGAP1 | (0.33, 0.14, P = 1.4e-07, N = 1829) | (0.46, -0.0031, P = 0.95, N = 859) |
rs1606889(G)/18:44214176* | LOXHD1 | (0.33, -0.18, P = 8.3e-06, N = 1829) | (0.25, -0.079, P = 0.15, N = 859) |
rs2161489(C)/19:17864452* | FCHO1 | (0.91, 0.3, P = 8.8e-06, N = 1829) | (0.72, 0.064, P = 0.24, N = 859) |
rs58855003(G)/2:150736508 | intergenic | (0.1, 0.25, P = 5.9e-06, N = 1829) | (0.029, -0.19, P = 0.17, N = 859) |
rs115962459(A)/2:216452525 | AC012668.2 | (0.017, -0.62, P = 7e-06, N = 1829) | (0.024, -0.11, P = 0.48, N = 859) |
rs3821665(A)/3:151133816* | MED12L | (0.51, -0.14, P = 2.4e-07, N = 1829) | (0.3, -0.0077, P = 0.88, N = 859) |
rs901212(A)/4:152913308 | intergenic | (0.29, -0.16, P = 4.5e-06, N = 1829) | (0.38, 0.065, P = 0.18, N = 859) |
rs2319481(T)/4:168502795 | intergenic | (0.61, 0.13, P = 3.1e-06, N = 1829) | (0.3, 0.048, P = 0.36, N = 859) |
rs793814(A)/4:185354974 | IRF2 | (0.63, -0.18, P = 5.5e-06, N = 1829) | (0.78, -0.067, P = 0.26, N = 859) |
rs6837120(T)/4:42649123 | ATP8A1 | (0.48, -0.12, P = 2.1e-06, N = 1829) | (0.42, 0.099, P = 0.039, N = 859) |
rs163450(T)/5:111868863 | intergenic | (0.077, -0.24, P = 5.1e-06, N = 1829) | (0.2, -0.006, P = 0.92, N = 859) |
rs4716060(A)/6:16310456 | ATXN1 | (0.27, -0.17, P = 2.4e-06, N = 1829) | (0.72, -0.039, P = 0.46, N = 859) |
rs876607(A)/6:16382649 | ATXN1 | (0.24, 0.17, P = 5e-06, N = 1829) | (0.43, 0.081, P = 0.1, N = 859) |
rs9464891(T)/6:16389631* | ATXN1 | (0.12, -0.25, P = 5e-06, N = 1829) | (0.23, 0.096, P = 0.087, N = 859) |
rs2490034(A)/6:3870889 | intergenic | (0.84, -0.26, P = 1.1e-06, N = 1829) | (0.95, -0.047, P = 0.67, N = 859) |
rs9361533(G)/6:80137259 | intergenic | (0.3, 0.2, P = 3.8e-06, N = 1829) | (0.36, -0.052, P = 0.29, N = 859) |
rs3800636(C)/7:137402718* | DGKI | (0.34, -0.19, P = 8.9e-06, N = 1829) | (0.75, 0.0054, P = 0.93, N = 859) |
rs3936106(A)/7:36731349 | AOAH | (0.18, 0.23, P = 6.4e-07, N = 1829) | (0.32, 0.062, P = 0.23, N = 859) |
rs7831286(G)/8:1122672 | CTD-2281E23.2 | (0.14, -0.15, P = 9.9e-06, N = 1829) | (0.12, 0.02, P = 0.78, N = 859) |
rs2125392(C)/9:76536127 | intergenic | (0.72, -0.19, P = 5e-06, N = 1829) | (0.3, -0.02, P = 0.71, N = 859) |
rs13295599(A)/9:87584025 | NTRK2 | (0.072, -0.41, P = 6.7e-06, N = 1829) | (0.019, 0.19, P = 0.29, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 29 | 0.05 (-0.09- 0.19) P=0.48 | 24 | 38 | 19.1 (0- 72.3) | NA | NA | -0.032 P=0.52 |
MR-Egger | 29 | 0.21 (-0.28- 0.69) P=0.41 | 24 | 38 | 19.1 (0- 72.3) | 39 | 0.059 | -0.032 P=0.52 |
Weighted median | 29 | 0.18 (0.0086- 0.35) P=0.04 | 24 | 38 | 19.1 (0- 72.3) | NA | NA | -0.032 P=0.52 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.05 | 0.07 | 0.7 | 0.49 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 23 | 0.045 (-0.12- 0.21) P=0.6 | 24 | 30 | 18.3 (0- 76.1) | NA | NA | -0.043 P=0.45 |
MR-Egger | 23 | 0.26 (-0.32- 0.84) P=0.39 | 24 | 30 | 18.3 (0- 76.1) | 31 | 0.066 | -0.043 P=0.45 |
Weighted median | 23 | 0.18 (-0.031- 0.39) P=0.095 | 24 | 30 | 18.3 (0- 76.1) | NA | NA | -0.043 P=0.45 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.05 | 0.09 | 0.53 | 0.6 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | 2-Hydroxyglutarate (Shin et al/Long et al) | eGFR (CSSCD) |
rs6664149(T)/1:160600521 | SLAMF1 | (0.98, 0.081, P = 2.9e-05, N = 7824) | (0.91, 0.053, P = 0.54, N = 859) |
rs6540821(A)/1:214495298 | SMYD2 | (0.91, -0.24, P = 9.6e-06, N = 1945) | (0.96, -0.0039, P = 0.98, N = 859) |
rs11122423(A)/1:232257914 | intergenic | (0.26, -0.14, P = 8.9e-06, N = 1945) | (0.59, 0.05, P = 0.3, N = 859) |
rs1670157(T)/10:67667698 | CTNNA3 | (0.35, -0.022, P = 3e-05, N = 7824) | (0.084, 0.12, P = 0.18, N = 859) |
rs6484669(T)/11:11120287 | intergenic | (0.74, -0.02, P = 7.8e-06, N = 7824) | (0.85, 0.057, P = 0.39, N = 859) |
rs1647967(A)/11:130943681 | intergenic | (0.17, 0.018, P = 1.6e-05, N = 7824) | (0.045, 0.1, P = 0.36, N = 859) |
rs2949855(T)/11:93722540* | HPRTP4 | (0.19, -0.029, P = 1.1e-05, N = 7824) | (0.12, 0.048, P = 0.52, N = 859) |
rs7972211(A)/12:14269986* | intergenic | (0.76, -0.026, P = 2.6e-05, N = 7824) | (0.74, -0.037, P = 0.49, N = 859) |
rs4459375(T)/12:48356881 | TMEM106C | (0.53, 0.15, P = 6.9e-06, N = 1945) | (0.54, -0.036, P = 0.47, N = 859) |
rs36031950(TA)/12:49754105 | DNAJC22 | (0.064, 0.14, P = 1.6e-06, N = 1945) | (0.64, 0.09, P = 0.067, N = 859) |
rs16963602(T)/13:104501480* | intergenic | (0.99, -0.064, P = 3.5e-05, N = 7824) | (0.89, -0.052, P = 0.5, N = 859) |
rs7320880(A)/13:24350292 | MIPEP | (0.17, 0.018, P = 2.1e-05, N = 7824) | (0.34, 0.063, P = 0.2, N = 859) |
rs9544785(A)/13:78971070* | RNF219-AS1 | (0.36, -0.015, P = 6.6e-06, N = 7824) | (0.31, 0.022, P = 0.67, N = 859) |
rs1053019(A)/14:102808273 | ZNF839 | (0.061, 0.027, P = 3.7e-05, N = 7824) | (0.17, -0.094, P = 0.16, N = 859) |
rs4900072(T)/14:91636532 | C14orf159 | (0.35, 0.18, P = 2.9e-06, N = 1945) | (0.14, -0.023, P = 0.75, N = 859) |
rs12587020(T)/14:91678546 | C14orf159 | (0.57, -0.013, P = 4.2e-05, N = 7824) | (0.18, 0.013, P = 0.84, N = 859) |
rs12886872(T)/14:91678812* | C14orf159 | (0.44, 0.013, P = 4.8e-05, N = 7824) | (0.82, -0.013, P = 0.84, N = 859) |
rs1043239(A)/15:63618110* | CA12 | (0.42, 0.017, P = 1.4e-05, N = 7824) | (0.61, 0.053, P = 0.28, N = 859) |
rs937098(T)/15:68894559* | CORO2B | (0.14, -0.023, P = 1.4e-05, N = 7824) | (0.53, -0.032, P = 0.5, N = 859) |
rs2689255(C)/16:54222800* | intergenic | (0.56, 0.17, P = 6.9e-07, N = 1945) | (0.55, -0.022, P = 0.65, N = 859) |
rs57029062(GC)/16:72712738 | RP5-991G20.1 | (0.98, 0.15, P = 9e-06, N = 1945) | (0.82, 0.023, P = 0.71, N = 859) |
rs12716966(C)/16:83253620* | CDH13 | (0.71, -0.015, P = 1.4e-05, N = 7824) | (0.53, -0.012, P = 0.8, N = 859) |
rs16977497(A)/17:71021645* | SLC39A11 | (0.045, 0.054, P = 9.9e-06, N = 7824) | (0.014, -0.055, P = 0.78, N = 859) |
rs632953(A)/18:22000799 | intergenic | (0.9, -0.022, P = 1.2e-05, N = 7824) | (0.77, -0.0061, P = 0.92, N = 859) |
rs17654263(T)/18:28178839 | intergenic | (0.017, 0.055, P = 4.6e-05, N = 7824) | (0.024, 0.12, P = 0.42, N = 859) |
rs7566877(T)/2:139994754 | intergenic | (0.97, -0.04, P = 1.9e-05, N = 7824) | (0.87, 0.026, P = 0.72, N = 859) |
rs10196007(T)/2:145329033 | AC010090.1 | (0.82, -0.032, P = 7.6e-07, N = 7824) | (0.64, -0.017, P = 0.74, N = 859) |
rs78147778(C)/2:242682029 | D2HGDH | (0.24, 0.27, P = 3.7e-09, N = 1945) | (0.22, -0.027, P = 0.64, N = 859) |
rs6707874(G)/2:242709363 | D2HGDH | (0.36, 0.27, P = 2.1e-12, N = 1945) | (0.71, 0.0033, P = 0.95, N = 859) |
rs2314702(C)/2:4402929 | intergenic | (0.42, 0.022, P = 4.1e-05, N = 7824) | (0.38, 0.056, P = 0.25, N = 859) |
rs2555453(A)/2:64528233* | intergenic | (0.29, 0.014, P = 4.8e-05, N = 7824) | (0.28, 0.079, P = 0.14, N = 859) |
rs12106014(C)/20:10015761 | ANKEF1 | (0.55, 0.18, P = 6.4e-07, N = 1945) | (0.79, 0.036, P = 0.54, N = 859) |
rs17690784(A)/20:16929912 | intergenic | (0.89, -0.023, P = 2.2e-05, N = 7824) | (0.98, -0.13, P = 0.5, N = 859) |
rs6064820(T)/20:58206004 | PHACTR3 | (0.72, 0.015, P = 4e-06, N = 7824) | (0.62, 0.064, P = 0.22, N = 859) |
rs2426843(A)/20:58380845* | PHACTR3 | (0.93, -0.027, P = 3.3e-05, N = 7824) | (0.28, 0.038, P = 0.48, N = 859) |
rs670752(A)/3:107312980* | BBX | (0.3, 0.015, P = 1.9e-05, N = 7824) | (0.28, -0.065, P = 0.21, N = 859) |
rs1568101(T)/3:148590090 | CPA3 | (0.91, -0.025, P = 8.6e-06, N = 7824) | (0.93, -0.042, P = 0.64, N = 859) |
rs11915217(A)/3:174027279* | intergenic | (0.31, -0.18, P = 5.9e-06, N = 1945) | (0.13, 0.074, P = 0.3, N = 859) |
rs16832543(C)/3:181272496 | SOX2-OT | (0.9, -0.021, P = 3.1e-05, N = 7824) | (0.8, 0.032, P = 0.6, N = 859) |
rs12497680(A)/3:194573366 | intergenic | (0.075, -0.35, P = 4.6e-07, N = 1945) | (0.081, 0.13, P = 0.15, N = 859) |
rs73890624(A)/3:194752697 | intergenic | (0.02, -0.58, P = 1.1e-06, N = 1945) | (0.15, -0.16, P = 0.022, N = 859) |
rs17640193(A)/3:62569620* | CADPS | (0.07, 0.025, P = 2.1e-05, N = 7824) | (0.03, 0.28, P = 0.049, N = 859) |
rs2575453(A)/4:42685758 | intergenic | (0.75, 0.014, P = 4.8e-05, N = 7824) | (0.53, 0.024, P = 0.64, N = 859) |
rs6834396(C)/4:5403998* | STK32B | (0.17, 0.035, P = 1.9e-05, N = 7824) | (0.71, -0.057, P = 0.28, N = 859) |
rs344130(T)/4:77647590* | SHROOM3 | (0.37, -0.014, P = 1.6e-05, N = 7824) | (0.56, 0.013, P = 0.79, N = 859) |
rs6876258(A)/5:151191673 | G3BP1 | (0.18, 0.017, P = 4.7e-05, N = 7824) | (0.34, 0.061, P = 0.24, N = 859) |
rs10475642(A)/5:157325495* | intergenic | (0.46, -0.014, P = 1.2e-05, N = 7824) | (0.6, 0.018, P = 0.71, N = 859) |
rs7702827(C)/5:158879869 | AC008703.1 | (0.3, -0.015, P = 6.3e-06, N = 7824) | (0.17, -0.02, P = 0.75, N = 859) |
rs17060337(A)/5:161872504* | intergenic | (0.011, -0.1, P = 9e-06, N = 7824) | (0.09, 0.041, P = 0.62, N = 859) |
rs2122552(C)/5:165957260 | intergenic | (0.028, -0.065, P = 4.3e-05, N = 7824) | (0.47, 0.0084, P = 0.86, N = 859) |
rs6451885(C)/5:20715134* | RP11-774D14.1 | (0.85, -0.27, P = 5.4e-06, N = 1945) | (0.9, 0.04, P = 0.62, N = 859) |
rs7725624(A)/5:63010725* | intergenic | (0.086, -0.044, P = 3e-06, N = 7824) | (0.23, 0.051, P = 0.36, N = 859) |
rs114947484(C)/6:121292872 | intergenic | (0.058, 0.33, P = 3.9e-06, N = 1945) | (0.023, -0.13, P = 0.44, N = 859) |
rs11964335(A)/6:149658101 | TAB2 | (0.49, -0.014, P = 1.2e-05, N = 7824) | (0.69, -0.023, P = 0.67, N = 859) |
rs3757187(C)/6:28107654 | ZKSCAN8 | (0.22, 0.16, P = 1.9e-06, N = 1945) | (0.32, -0.023, P = 0.66, N = 859) |
rs9395212(C)/6:46726441* | ANKRD66 | (0.74, 0.23, P = 8.1e-07, N = 1945) | (0.92, -0.082, P = 0.33, N = 859) |
rs10806320(A)/6:86000465 | RP11-30P6.1 | (0.22, 0.17, P = 5.7e-06, N = 1945) | (0.11, -0.024, P = 0.75, N = 859) |
rs12174071(A)/6:98204538 | intergenic | (0.88, 0.022, P = 1.6e-05, N = 7824) | (0.9, -0.035, P = 0.66, N = 859) |
rs8176023(A)/7:142642596 | KEL | (0.93, -0.041, P = 2.5e-06, N = 7824) | (0.99, -0.15, P = 0.52, N = 859) |
rs17154808(T)/7:80788160 | intergenic | (0.016, -0.089, P = 4.4e-05, N = 7824) | (0.13, -0.038, P = 0.59, N = 859) |
rs933341(A)/7:83743619 | SEMA3A | (0.24, 0.017, P = 1.6e-06, N = 7824) | (0.4, -0.01, P = 0.83, N = 859) |
rs6558423(A)/8:1145909* | CTD-2281E23.2 | (0.2, -0.018, P = 1.8e-05, N = 7824) | (0.42, -0.014, P = 0.78, N = 859) |
rs11998124(T)/8:128085480 | PCAT2 | (0.053, 0.03, P = 4.9e-05, N = 7824) | (0.45, -0.0036, P = 0.94, N = 859) |
rs890519(A)/8:18905049* | PSD3 | (0.42, 0.015, P = 9.1e-06, N = 7824) | (0.38, -0.028, P = 0.57, N = 859) |
rs11991231(C)/8:19907912* | intergenic | (0.11, -0.39, P = 1e-08, N = 1945) | (0.074, 0.11, P = 0.25, N = 859) |
rs199605811(C)/8:54204040 | intergenic | (0.027, 0.3, P = 3.4e-06, N = 1945) | (0.036, 0.15, P = 0.26, N = 859) |
rs4837718(A)/9:122918241 | intergenic | (0.75, -0.014, P = 4.8e-05, N = 7824) | (0.3, 0.089, P = 0.094, N = 859) |
rs12341112(A)/9:22790893 | RP11-399D6.2 | (0.11, 0.021, P = 3.3e-05, N = 7824) | (0.4, 0.065, P = 0.18, N = 859) |
rs10966201(T)/9:24079188 | intergenic | (0.66, 0.015, P = 7.1e-06, N = 7824) | (0.66, 0.031, P = 0.54, N = 859) |
rs10816013(T)/9:8942036* | PTPRD | (0.14, -0.19, P = 8.6e-06, N = 1945) | (0.035, -0.023, P = 0.86, N = 859) |
rs1412466(T)/9:94282510 | intergenic | (0.23, 0.19, P = 2.8e-07, N = 1945) | (0.29, 0.03, P = 0.58, N = 859) |
rs4744059(C)/9:94337776 | ROR2 | (0.27, 0.18, P = 1.6e-07, N = 1945) | (0.74, 0.009, P = 0.87, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 72 | 0.011 (-0.087- 0.11) P=0.82 | 9.5 | 33 | 4.61 (0- 4.54) | NA | NA | 0.0028 P=0.76 |
MR-Egger | 72 | -0.0027 (-0.15- 0.14) P=0.97 | 9.5 | 33 | 4.61 (0- 4.54) | 53 | 0.93 | 0.0028 P=0.76 |
Weighted median | 72 | -0.06 (-0.24- 0.12) P=0.52 | 9.5 | 33 | 4.61 (0- 4.54) | NA | NA | 0.0028 P=0.76 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.01 | 0.05 | 0.23 | 0.82 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 46 | 0.072 (-0.038- 0.18) P=0.2 | 9.8 | 22 | 4.72 (0- 16.7) | NA | NA | 0.0054 P=0.65 |
MR-Egger | 46 | 0.047 (-0.12- 0.21) P=0.58 | 9.8 | 22 | 4.72 (0- 16.7) | 34 | 0.86 | 0.0054 P=0.65 |
Weighted median | 46 | 0.015 (-0.19- 0.22) P=0.89 | 9.8 | 22 | 4.72 (0- 16.7) | NA | NA | 0.0054 P=0.65 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.07 | 0.06 | 1.29 | 0.2 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | 3-Methyladipic acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs10908821(G)/1:161008535* | TSTD1 | (0.12, -0.19, P = 1.7e-07, N = 1947) | (0.08, 0.19, P = 0.035, N = 859) |
rs76552190(C)/14:28430652 | intergenic | (0.016, 0.65, P = 5.8e-06, N = 1947) | (0.019, 0.35, P = 0.05, N = 859) |
rs7143798(G)/14:33637107* | NPAS3 | (0.27, 0.2, P = 7.8e-06, N = 1947) | (0.47, 0.015, P = 0.76, N = 859) |
rs2460846(C)/15:36035176 | DPH6-AS1 | (0.41, -0.13, P = 5.7e-06, N = 1947) | (0.63, -0.024, P = 0.62, N = 859) |
rs11638741(C)/15:68734727* | intergenic | (0.98, -0.62, P = 7.7e-06, N = 1947) | (0.83, -0.092, P = 0.14, N = 859) |
rs1694246(G)/18:51401250* | intergenic | (0.89, -0.17, P = 7.6e-06, N = 1947) | (0.73, -0.13, P = 0.022, N = 859) |
rs637188(C)/18:58207240* | intergenic | (0.63, -0.11, P = 7.6e-06, N = 1947) | (0.45, -0.00074, P = 0.99, N = 859) |
rs536042327(CT)/2:188187872 | AC007319.1 | (0.01, 0.48, P = 8.7e-06, N = 1947) | (0.4, -0.058, P = 0.24, N = 859) |
rs6545578(C)/2:56784495* | intergenic | (0.84, 0.28, P = 1.2e-08, N = 1947) | (0.97, -0.0061, P = 0.96, N = 859) |
rs10805124(C)/4:44310296 | KCTD8 | (0.67, -0.2, P = 9.7e-06, N = 1947) | (0.75, -0.028, P = 0.61, N = 859) |
rs9292558(T)/5:34663830* | RAI14 | (0.075, -0.27, P = 3.9e-06, N = 1947) | (0.052, 0.0091, P = 0.93, N = 859) |
rs142983506(CAT)/6:126003666 | RP1-293L8.2 | (0.4, -0.13, P = 2.5e-06, N = 1947) | (0.24, -0.0098, P = 0.86, N = 859) |
rs1185568(A)/6:25834428* | SLC17A1 | (0.55, 0.4, P = 2.7e-30, N = 1947) | (0.89, -0.039, P = 0.62, N = 859) |
rs56144311(C)/7:21660173* | DNAH11 | (0.077, 0.26, P = 9.1e-06, N = 1947) | (0.27, 0.048, P = 0.38, N = 859) |
rs113283332(A)/7:36047671 | intergenic | (0.014, 0.73, P = 1e-06, N = 1947) | (0.25, -0.012, P = 0.83, N = 859) |
rs112212379(A)/7:36052900 | intergenic | (0.013, 0.69, P = 8.6e-06, N = 1947) | (0.067, 0.11, P = 0.24, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 16 | 0.046 (-0.048- 0.14) P=0.34 | 31 | 25 | 14.6 (0- 82.7) | NA | NA | 0.015 P=0.66 |
MR-Egger | 16 | 0.013 (-0.16- 0.19) P=0.89 | 31 | 25 | 14.6 (0- 82.7) | 19 | 0.18 | 0.015 P=0.66 |
Weighted median | 16 | -0.0021 (-0.13- 0.13) P=0.97 | 31 | 25 | 14.6 (0- 82.7) | NA | NA | 0.015 P=0.66 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.05 | 0.05 | 0.96 | 0.35 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 7 | 0.015 (-0.099- 0.13) P=0.8 | 22 | 7.9 | 23.8 (0- 86.3) | NA | NA | 0.014 P=0.78 |
MR-Egger | 7 | -0.013 (-0.23- 0.21) P=0.91 | 22 | 7.9 | 23.8 (0- 86.3) | 6.9 | 0.23 | 0.014 P=0.78 |
Weighted median | 7 | -0.011 (-0.16- 0.13) P=0.88 | 22 | 7.9 | 23.8 (0- 86.3) | NA | NA | 0.014 P=0.78 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.02 | 0.06 | 0.26 | 0.8 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | X4.pyridoxate (Shin et al/Long et al) | eGFR (CSSCD) |
rs66994930(G)/1:14288571 | intergenic | (0.098, 0.2, P = 3.7e-06, N = 1938) | (0.097, -0.08, P = 0.32, N = 859) |
rs7531679(T)/1:160634341 | intergenic | (0.9, 0.049, P = 9e-06, N = 7824) | (0.96, -0.18, P = 0.17, N = 859) |
rs670874(A)/1:182678213 | RP11-317P15.3 | (0.42, -0.17, P = 1.3e-07, N = 1938) | (0.58, -0.042, P = 0.4, N = 859) |
rs11119975(T)/1:212747722 | ATF3 | (0.15, -0.022, P = 1.4e-05, N = 7824) | (0.02, -0.089, P = 0.6, N = 859) |
rs11118327(T)/1:219692313* | intergenic | (0.36, -0.017, P = 2.4e-05, N = 7824) | (0.067, 0.11, P = 0.22, N = 859) |
rs11118329(A)/1:219701961 | intergenic | (0.64, 0.016, P = 4.6e-05, N = 7824) | (0.93, -0.15, P = 0.12, N = 859) |
rs1877156(G)/1:226313671 | RP11-396C23.3 | (0.59, 0.17, P = 8.3e-06, N = 1938) | (0.36, 0.061, P = 0.23, N = 859) |
rs77069129(T)/1:246823978 | CNST | (0.015, 0.51, P = 6.5e-06, N = 1938) | (0.21, -0.022, P = 0.72, N = 859) |
rs1392744(C)/1:37327225 | GRIK3 | (0.94, 0.31, P = 6e-06, N = 1938) | (0.59, -0.025, P = 0.61, N = 859) |
rs12025777(T)/1:41748897* | RP11-399E6.1 | (0.072, -0.33, P = 6.5e-06, N = 1938) | (0.077, -0.091, P = 0.3, N = 859) |
rs2125421(T)/1:96458324 | RP11-147C23.1 | (0.17, 0.02, P = 4.8e-05, N = 7824) | (0.37, 0.06, P = 0.23, N = 859) |
rs6696033(T)/1:97595784 | DPYD | (0.96, -0.055, P = 4.3e-06, N = 7824) | (0.81, -0.041, P = 0.5, N = 859) |
rs12573136(C)/10:28303355 | RP11-218D6.4 | (0.11, 0.32, P = 9.8e-06, N = 1938) | (0.21, -0.064, P = 0.28, N = 859) |
rs2123348(T)/10:4779211 | intergenic | (0.78, 0.018, P = 1.3e-05, N = 7824) | (0.51, -0.047, P = 0.31, N = 859) |
rs11214633(A)/11:113382519 | intergenic | (0.022, 0.053, P = 3e-05, N = 7824) | (0.015, -0.038, P = 0.85, N = 859) |
rs4755281(T)/11:44758398 | RP11-45A12.2 | (0.92, -0.03, P = 1.6e-05, N = 7824) | (0.72, -0.036, P = 0.5, N = 859) |
rs111633747(A)/11:80237332 | RNU6-544P | (0.092, -0.27, P = 8.6e-06, N = 1938) | (0.07, -0.03, P = 0.75, N = 859) |
rs55995000(T)/12:33046205 | PKP2 | (0.15, 0.3, P = 5e-07, N = 1938) | (0.022, 0.23, P = 0.17, N = 859) |
rs400120(A)/12:52831340* | KRT75 | (0.65, 0.019, P = 1.3e-06, N = 7824) | (0.94, 0.074, P = 0.46, N = 859) |
rs12814098(G)/12:5521537* | intergenic | (0.46, -0.17, P = 4.5e-07, N = 1938) | (0.17, -0.0078, P = 0.9, N = 859) |
rs35619331(A)/12:5526184 | intergenic | (0.21, 0.2, P = 6.8e-06, N = 1938) | (0.043, 0.067, P = 0.58, N = 859) |
rs2183242(C)/13:21271776* | IL17D | (0.042, 0.04, P = 3.5e-05, N = 7824) | (0.11, 0.024, P = 0.76, N = 859) |
rs1571295(T)/13:93116692 | GPC5 | (0.54, 0.014, P = 4.6e-05, N = 7824) | (0.74, -0.027, P = 0.62, N = 859) |
rs9556658(A)/13:97678251* | intergenic | (0.87, 0.023, P = 4e-05, N = 7824) | (0.44, 0.034, P = 0.47, N = 859) |
rs17750938(G)/14:94356089 | intergenic | (0.091, -0.25, P = 5.6e-06, N = 1938) | (0.026, 0.063, P = 0.68, N = 859) |
rs1370431(T)/15:61472687* | RP11-39M21.1 | (0.63, -0.017, P = 1.4e-05, N = 7824) | (0.46, -0.056, P = 0.24, N = 859) |
rs2572207(T)/15:66070693* | DENND4A | (0.25, -0.017, P = 4.3e-05, N = 7824) | (0.38, 0.13, P = 0.0088, N = 859) |
rs10500486(A)/16:64027542* | intergenic | (0.057, 0.034, P = 3.5e-05, N = 7824) | (0.1, 0.064, P = 0.42, N = 859) |
rs12931734(T)/16:8296086* | intergenic | (0.21, 0.022, P = 3.8e-06, N = 7824) | (0.088, -0.00049, P = 1, N = 859) |
rs8097(G)/16:8953081 | CARHSP1 | (0.65, 0.18, P = 1.3e-06, N = 1938) | (0.35, -0.033, P = 0.53, N = 859) |
rs13381663(T)/18:22860759 | ZNF521 | (0.79, -0.019, P = 3.7e-05, N = 7824) | (0.72, -0.11, P = 0.042, N = 859) |
rs28367036(C)/18:23029962 | intergenic | (0.093, 0.19, P = 3.3e-06, N = 1938) | (0.059, -0.063, P = 0.52, N = 859) |
rs12965568(A)/18:31034308 | intergenic | (0.34, 0.017, P = 1.4e-05, N = 7824) | (0.36, -0.029, P = 0.56, N = 859) |
rs1431844(T)/18:40071148 | LINC00907 | (0.026, 0.056, P = 2.3e-06, N = 7824) | (0.11, 0.023, P = 0.76, N = 859) |
rs12953402(T)/18:45852017* | ZBTB7C | (0.19, 0.021, P = 2.2e-05, N = 7824) | (0.16, 0.061, P = 0.35, N = 859) |
rs73936950(C)/19:45241350 | intergenic | (0.013, 0.72, P = 3.1e-06, N = 1938) | (0.11, -0.0054, P = 0.95, N = 859) |
rs6752425(T)/2:159323562* | PKP4 | (0.031, 0.097, P = 3.8e-06, N = 7824) | (0.16, 0.092, P = 0.15, N = 859) |
rs4674858(T)/2:224916420 | intergenic | (0.01, 0.15, P = 6.6e-06, N = 7824) | (0.038, -0.17, P = 0.18, N = 859) |
rs11125947(T)/2:63334101* | RP11-511I11.1 | (0.32, 0.018, P = 9.8e-06, N = 7824) | (0.4, 0.011, P = 0.82, N = 859) |
rs6013068(C)/20:49662264 | intergenic | (0.87, -0.19, P = 8.9e-06, N = 1938) | (0.98, -0.12, P = 0.45, N = 859) |
rs6127732(T)/20:54933104 | FAM210B | (0.052, 0.035, P = 2.8e-05, N = 7824) | (0.019, -0.14, P = 0.44, N = 859) |
rs11908680(A)/20:6681348 | intergenic | (0.96, -0.04, P = 2.8e-05, N = 7824) | (0.91, 0.071, P = 0.41, N = 859) |
rs4817986(T)/21:40465512* | intergenic | (0.26, 0.018, P = 2e-05, N = 7824) | (0.13, 0.039, P = 0.58, N = 859) |
rs5758632(T)/22:42578054 | TCF20 | (0.023, 0.053, P = 3e-05, N = 7824) | (0.072, -0.055, P = 0.55, N = 859) |
rs7510746(A)/22:49796563 | intergenic | (0.026, 0.6, P = 7.2e-06, N = 1938) | (0.39, 0.049, P = 0.32, N = 859) |
rs1350932(C)/3:110527632 | intergenic | (0.97, 0.5, P = 6.8e-07, N = 1938) | (0.72, -0.093, P = 0.086, N = 859) |
rs10001753(T)/4:27786481* | intergenic | (0.021, 0.75, P = 6.3e-06, N = 1938) | (0.027, -0.15, P = 0.32, N = 859) |
rs113718328(T)/5:178273952 | intergenic | (0.017, 0.58, P = 4.9e-06, N = 1938) | (0.066, 0.056, P = 0.57, N = 859) |
rs1878728(T)/6:118117328* | intergenic | (0.68, -0.017, P = 3.8e-05, N = 7824) | (0.63, 0.098, P = 0.041, N = 859) |
rs11758777(T)/6:153798688* | intergenic | (0.77, 0.018, P = 7.7e-06, N = 7824) | (0.7, -0.056, P = 0.3, N = 859) |
rs2197296(A)/6:160568997* | SLC22A1 | (0.25, 0.021, P = 4.7e-06, N = 7824) | (0.12, -0.016, P = 0.83, N = 859) |
rs7742715(A)/6:165298415* | intergenic | (0.36, 0.029, P = 6.6e-06, N = 7824) | (0.38, -0.03, P = 0.54, N = 859) |
rs9393768(A)/6:26885619* | GUSBP2 | (0.36, -0.017, P = 3.4e-05, N = 7824) | (0.59, 0.00081, P = 0.99, N = 859) |
rs4959343(T)/6:5669950* | FARS2 | (0.97, 0.37, P = 3.1e-06, N = 1938) | (0.65, -0.027, P = 0.59, N = 859) |
rs2643196(G)/6:74262700* | RP11-505P4.7 | (0.064, 0.3, P = 3.1e-06, N = 1938) | (0.17, 0.045, P = 0.49, N = 859) |
rs6464172(A)/7:151506039 | PRKAG2 | (0.45, 0.027, P = 2.9e-05, N = 7824) | (0.63, -0.043, P = 0.38, N = 859) |
rs4588750(A)/7:3403049 | SDK1 | (0.15, -0.23, P = 6.2e-06, N = 1938) | (0.17, -0.0079, P = 0.9, N = 859) |
rs11761829(A)/7:36556697* | AOAH | (0.96, -0.062, P = 4.9e-05, N = 7824) | (0.64, 0.02, P = 0.69, N = 859) |
rs4723965(A)/7:40540407 | SUGCT | (0.86, 0.23, P = 6.1e-06, N = 1938) | (0.99, 0.047, P = 0.82, N = 859) |
rs10950112(A)/7:67642170* | RP5-945F2.3 | (0.71, 0.017, P = 4.7e-05, N = 7824) | (0.85, 0.0014, P = 0.98, N = 859) |
rs6466258(A)/7:78143956 | MAGI2 | (0.57, 0.19, P = 9.8e-06, N = 1938) | (0.83, -0.017, P = 0.79, N = 859) |
rs7842609(A)/8:105697775* | RP11-127H5.1 | (0.48, -0.016, P = 3.4e-05, N = 7824) | (0.67, 0.066, P = 0.19, N = 859) |
rs11984592(C)/8:16367919* | MSR1 | (0.029, 0.49, P = 1.9e-06, N = 1938) | (0.57, -0.035, P = 0.48, N = 859) |
rs62490090(G)/8:16376078 | MSR1 | (0.029, 0.46, P = 6.3e-06, N = 1938) | (0.011, 0.0045, P = 0.98, N = 859) |
rs11204173(T)/8:21333478 | intergenic | (0.82, -0.025, P = 2.4e-05, N = 7824) | (0.93, -0.022, P = 0.82, N = 859) |
rs9314336(A)/8:26879523 | intergenic | (0.19, 0.033, P = 2.5e-05, N = 7824) | (0.47, -0.014, P = 0.77, N = 859) |
rs10099954(C)/8:27715891 | intergenic | (0.34, 0.18, P = 8.2e-06, N = 1938) | (0.63, 0.025, P = 0.61, N = 859) |
rs6988929(A)/8:38418517* | RP11-675F6.4 | (0.034, 0.089, P = 2.9e-05, N = 7824) | (0.034, -0.089, P = 0.5, N = 859) |
rs10820118(A)/9:105036692* | intergenic | (0.25, -0.018, P = 1.6e-05, N = 7824) | (0.33, 0.006, P = 0.91, N = 859) |
rs4740188(T)/9:134698342 | RP11-323H21.3 | (0.4, 0.016, P = 4.7e-05, N = 7824) | (0.45, 0.017, P = 0.74, N = 859) |
rs2383141(A)/9:20641181* | intergenic | (0.44, 0.016, P = 3.3e-05, N = 7824) | (0.68, 0.01, P = 0.84, N = 859) |
rs1927938(T)/9:73921879 | TRPM3 | (0.15, -0.024, P = 1.4e-06, N = 7824) | (0.42, 0.014, P = 0.78, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 72 | -0.019 (-0.08- 0.042) P=0.54 | 11 | 38 | 0 (0- 25.9) | NA | NA | -0.0057 P=0.55 |
MR-Egger | 72 | -0.0033 (-0.089- 0.082) P=0.94 | 11 | 38 | 0 (0- 25.9) | 56 | 0.89 | -0.0057 P=0.55 |
Weighted median | 72 | -0.034 (-0.14- 0.067) P=0.5 | 11 | 38 | 0 (0- 25.9) | NA | NA | -0.0057 P=0.55 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.02 | 0.03 | -0.62 | 0.54 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 43 | -0.013 (-0.081- 0.055) P=0.72 | 14 | 29 | 0.13 (0- 22.4) | NA | NA | -0.0021 P=0.88 |
MR-Egger | 43 | -0.007 (-0.11- 0.1) P=0.9 | 14 | 29 | 0.13 (0- 22.4) | 31 | 0.88 | -0.0021 P=0.88 |
Weighted median | 43 | -0.007 (-0.13- 0.11) P=0.91 | 14 | 29 | 0.13 (0- 22.4) | NA | NA | -0.0021 P=0.88 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.01 | 0.03 | -0.36 | 0.72 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Allantoin (Shin et al/Long et al) | eGFR (CSSCD) |
rs12136839(A)/1:147232488 | GJA5 | (0.95, -0.037, P = 4.4e-05, N = 7824) | (0.99, 0.11, P = 0.65, N = 859) |
rs12132798(C)/1:216020536 | USH2A | (0.97, 0.061, P = 2.1e-06, N = 7824) | (0.96, 0.057, P = 0.65, N = 859) |
rs4579742(A)/1:239460167 | intergenic | (0.13, 0.029, P = 5.2e-06, N = 7824) | (0.51, 0.065, P = 0.18, N = 859) |
rs10799024(A)/1:30510681* | RP11-111I12.1 | (0.32, 0.019, P = 4.2e-05, N = 7824) | (0.5, 0.011, P = 0.82, N = 859) |
rs6659223(A)/1:39076845 | intergenic | (0.68, -0.019, P = 3.9e-05, N = 7824) | (0.74, 0.12, P = 0.027, N = 859) |
rs11211464(T)/1:47598032* | CYP4A22-AS1 | (0.69, 0.046, P = 4.7e-05, N = 7824) | (0.68, 0.026, P = 0.61, N = 859) |
rs2420679(A)/10:122035596* | intergenic | (0.26, 0.019, P = 4.1e-05, N = 7824) | (0.19, -0.0079, P = 0.9, N = 859) |
rs7917625(T)/10:19294417* | intergenic | (0.63, -0.018, P = 4.5e-05, N = 7824) | (0.67, -0.004, P = 0.94, N = 859) |
rs2388712(A)/10:8382503* | intergenic | (0.16, 0.024, P = 2.1e-05, N = 7824) | (0.025, 0.0037, P = 0.98, N = 859) |
rs7122363(T)/11:116449283 | intergenic | (0.17, -0.025, P = 4.5e-05, N = 7824) | (0.12, -0.017, P = 0.82, N = 859) |
rs496084(A)/11:128976002* | ARHGAP32 | (0.14, -0.063, P = 3.4e-05, N = 7824) | (0.09, 0.057, P = 0.51, N = 859) |
rs895797(A)/11:131264611* | NTM | (0.22, -0.02, P = 4e-05, N = 7824) | (0.23, -0.019, P = 0.74, N = 859) |
rs10492266(T)/12:115605697* | intergenic | (0.43, -0.017, P = 8.8e-06, N = 7824) | (0.74, -0.024, P = 0.67, N = 859) |
rs10771223(A)/12:25651899* | IFLTD1 | (0.78, 0.024, P = 2.9e-07, N = 7824) | (0.7, 0.076, P = 0.15, N = 859) |
rs11171691(A)/12:39699101 | KIF21A | (0.062, -0.088, P = 3.6e-05, N = 7824) | (0.012, -0.047, P = 0.84, N = 859) |
rs699634(T)/12:64546423* | SRGAP1 | (0.98, 0.23, P = 1.2e-05, N = 7824) | (0.81, 0.044, P = 0.47, N = 859) |
rs167277(A)/12:78483079* | NAV3 | (0.78, -0.021, P = 7.9e-06, N = 7824) | (0.83, -0.049, P = 0.45, N = 859) |
rs9301035(A)/13:106155027* | DAOA-AS1 | (0.43, 0.058, P = 1.8e-05, N = 7824) | (0.88, -0.066, P = 0.37, N = 859) |
rs7985555(T)/13:24660336* | SPATA13 | (0.55, -0.019, P = 4.3e-05, N = 7824) | (0.43, 0.029, P = 0.54, N = 859) |
rs11147404(T)/13:30539456 | intergenic | (0.89, 0.028, P = 8.7e-06, N = 7824) | (0.81, 0.03, P = 0.64, N = 859) |
rs2480555(T)/13:71887309* | intergenic | (0.85, 0.023, P = 4.2e-05, N = 7824) | (0.75, 0.026, P = 0.65, N = 859) |
rs17294670(T)/13:82296976* | intergenic | (0.96, -0.045, P = 3.2e-05, N = 7824) | (0.89, -0.043, P = 0.57, N = 859) |
rs2329277(T)/13:84131308 | intergenic | (0.17, 0.023, P = 2.2e-05, N = 7824) | (0.29, -0.11, P = 0.038, N = 859) |
rs9555859(T)/13:89862800* | LINC01047 | (0.97, -0.046, P = 3.7e-05, N = 7824) | (0.92, -0.0043, P = 0.96, N = 859) |
rs8020559(T)/14:52490690 | NID2 | (0.84, -0.024, P = 2.2e-05, N = 7824) | (0.84, 0.012, P = 0.85, N = 859) |
rs9323272(A)/14:55288924 | intergenic | (0.33, 0.045, P = 3.8e-05, N = 7824) | (0.58, -0.029, P = 0.55, N = 859) |
rs2293319(T)/15:31235357* | MTMR10 | (0.79, -0.022, P = 3.6e-06, N = 7824) | (0.6, -0.0038, P = 0.94, N = 859) |
rs2719726(A)/16:10779741* | TEKT5 | (0.52, 0.02, P = 1e-05, N = 7824) | (0.3, 0.01, P = 0.85, N = 859) |
rs9788926(A)/16:1807780* | MAPK8IP3 | (0.76, 0.019, P = 4.9e-05, N = 7824) | (0.47, 0.00074, P = 0.99, N = 859) |
rs11646986(T)/16:80855611 | intergenic | (0.82, -0.023, P = 2.1e-05, N = 7824) | (0.77, 0.08, P = 0.16, N = 859) |
rs2549842(T)/16:81023659* | CMC2 | (0.79, -0.021, P = 8.7e-06, N = 7824) | (0.41, -0.023, P = 0.64, N = 859) |
rs8064075(A)/16:87175636 | C16orf95 | (0.64, 0.047, P = 3.2e-05, N = 7824) | (0.22, -0.002, P = 0.97, N = 859) |
rs11658900(A)/17:27095485* | FAM222B | (0.56, -0.016, P = 1e-05, N = 7824) | (0.096, -0.062, P = 0.46, N = 859) |
rs8076290(A)/17:828023 | NXN | (0.048, 0.061, P = 3.9e-05, N = 7824) | (0.33, 0.0063, P = 0.9, N = 859) |
rs402573(T)/18:65248521* | RP11-638L3.1 | (0.15, -0.024, P = 1.8e-05, N = 7824) | (0.21, 0.068, P = 0.23, N = 859) |
rs8108144(T)/19:23373200 | AC092329.1 | (0.79, -0.023, P = 6.4e-07, N = 7824) | (0.83, 0.04, P = 0.52, N = 859) |
rs2972521(A)/19:48476964* | BSPH1 | (0.56, 0.02, P = 1.2e-05, N = 7824) | (0.22, -0.012, P = 0.83, N = 859) |
rs11564620(T)/19:48571072 | PLA2G4C | (0.9, -0.029, P = 3.4e-05, N = 7824) | (0.77, 0.07, P = 0.21, N = 859) |
rs4347830(A)/2:228058016* | COL4A3 | (0.34, 0.021, P = 2.7e-05, N = 7824) | (0.58, 0.0042, P = 0.93, N = 859) |
rs1431793(A)/2:236173098 | intergenic | (0.75, -0.022, P = 2.9e-06, N = 7824) | (0.71, 0.12, P = 0.027, N = 859) |
rs17398510(A)/2:35129873* | AC012593.1 | (0.88, -0.034, P = 2.2e-05, N = 7824) | (0.98, -0.0049, P = 0.97, N = 859) |
rs8184921(T)/21:22372723* | NCAM2 | (0.51, 0.017, P = 9.8e-06, N = 7824) | (0.36, 0.096, P = 0.056, N = 859) |
rs5767976(A)/22:48158986 | RP11-191L9.4 | (0.53, -0.045, P = 1.6e-05, N = 7824) | (0.83, -0.045, P = 0.49, N = 859) |
rs1499094(T)/3:1244434 | CNTN6 | (0.77, 0.021, P = 7.7e-06, N = 7824) | (0.61, 0.046, P = 0.34, N = 859) |
rs4894514(A)/3:171558472* | TMEM212 | (0.53, 0.018, P = 3.6e-05, N = 7824) | (0.68, -0.021, P = 0.69, N = 859) |
rs6804104(A)/3:1756711* | intergenic | (0.85, -0.026, P = 1.5e-05, N = 7824) | (0.75, 0.04, P = 0.46, N = 859) |
rs1799412(C)/3:40210125 | MYRIP | (0.84, -0.026, P = 2.3e-06, N = 7824) | (0.82, 0.066, P = 0.29, N = 859) |
rs1320934(A)/3:61884650 | PTPRG | (0.96, 0.12, P = 1.5e-06, N = 7824) | (0.69, -0.039, P = 0.44, N = 859) |
rs9834988(T)/3:79630364* | ROBO1 | (0.53, 0.018, P = 8e-07, N = 7824) | (0.48, 0.011, P = 0.82, N = 859) |
rs4698025(A)/4:10305157* | intergenic | (0.3, 0.019, P = 2.2e-05, N = 7824) | (0.27, -0.013, P = 0.81, N = 859) |
rs312360(T)/4:19259131* | RP11-3J1.1 | (0.82, 0.022, P = 4.7e-05, N = 7824) | (0.88, -0.043, P = 0.54, N = 859) |
rs544236(T)/4:20235828* | intergenic | (0.82, 0.023, P = 2.2e-05, N = 7824) | (0.82, 0.027, P = 0.67, N = 859) |
rs17553672(T)/4:24839564* | CCDC149 | (0.82, 0.023, P = 2.1e-05, N = 7824) | (0.97, 0.2, P = 0.2, N = 859) |
rs13117183(C)/4:43156439* | RP11-395F4.1 | (0.14, -0.028, P = 1.3e-05, N = 7824) | (0.022, -0.25, P = 0.13, N = 859) |
rs4705317(A)/5:148500566* | RN7SKP145 | (0.61, 0.019, P = 2.6e-05, N = 7824) | (0.36, 0.064, P = 0.19, N = 859) |
rs7723208(T)/5:174038768* | intergenic | (0.18, 0.023, P = 4.3e-05, N = 7824) | (0.2, -0.0099, P = 0.87, N = 859) |
rs16867673(A)/5:38730230 | intergenic | (0.96, 0.044, P = 3.4e-05, N = 7824) | (0.86, 0.079, P = 0.26, N = 859) |
rs27223(T)/5:59752640* | SETP21 | (0.64, -0.019, P = 3.5e-05, N = 7824) | (0.89, -0.12, P = 0.12, N = 859) |
rs2068093(C)/6:114097900* | U3 | (0.43, 0.044, P = 1.4e-05, N = 7824) | (0.52, -0.055, P = 0.26, N = 859) |
rs12203935(A)/6:121276377* | intergenic | (0.17, -0.023, P = 3.5e-05, N = 7824) | (0.027, 0.08, P = 0.59, N = 859) |
rs4869723(T)/6:151579432* | AKAP12 | (0.44, -0.016, P = 4e-05, N = 7824) | (0.56, 0.068, P = 0.16, N = 859) |
rs2064599(T)/6:47259683* | TNFRSF21 | (0.54, 0.016, P = 2e-05, N = 7824) | (0.1, 0.018, P = 0.82, N = 859) |
rs972709(A)/6:66255788 | EYS | (0.65, 0.048, P = 6.7e-06, N = 7824) | (0.89, -0.07, P = 0.37, N = 859) |
rs2875567(A)/6:90100643* | RRAGD | (0.89, 0.027, P = 2.2e-05, N = 7824) | (0.83, 0.053, P = 0.43, N = 859) |
rs12189555(A)/6:91104402 | intergenic | (0.77, 0.021, P = 5.1e-06, N = 7824) | (0.94, 0.07, P = 0.48, N = 859) |
rs9377577(A)/6:96666785 | FUT9 | (0.21, -0.052, P = 2.2e-05, N = 7824) | (0.07, -0.14, P = 0.14, N = 859) |
rs10953522(A)/7:106588426 | intergenic | (0.53, 0.018, P = 4.3e-05, N = 7824) | (0.64, 0.067, P = 0.18, N = 859) |
rs12718598(T)/7:50428445* | IKZF1 | (0.52, 0.018, P = 1.5e-06, N = 7824) | (0.48, 0.01, P = 0.83, N = 859) |
rs10505632(T)/8:135892340* | RP11-1057B8.2 | (0.17, -0.023, P = 3e-05, N = 7824) | (0.083, 0.072, P = 0.39, N = 859) |
rs965525(T)/8:22579627 | PEBP4 | (0.71, -0.019, P = 4.1e-05, N = 7824) | (0.5, 0.09, P = 0.055, N = 859) |
rs17069778(A)/8:4121520* | CSMD1 | (0.94, 0.034, P = 3.5e-05, N = 7824) | (0.82, 0.0015, P = 0.98, N = 859) |
rs1447307(T)/8:94286040 | RP11-388K12.2 | (0.23, -0.021, P = 5.7e-06, N = 7824) | (0.21, 0.00097, P = 0.99, N = 859) |
rs2781102(A)/9:122558384* | intergenic | (0.52, 0.016, P = 4.3e-05, N = 7824) | (0.66, -0.015, P = 0.77, N = 859) |
rs12352353(A)/9:4743341* | AK3 | (0.88, -0.027, P = 2.2e-05, N = 7824) | (0.87, 0.0049, P = 0.94, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 74 | -0.011 (-0.31- 0.29) P=0.94 | 2.4 | 2.3 | 0 (0- 26.7) | NA | NA | -0.0048 P=0.64 |
MR-Egger | 74 | 0.072 (-0.4- 0.55) P=0.77 | 2.4 | 2.3 | 0 (0- 26.7) | 60 | 0.83 | -0.0048 P=0.64 |
Weighted median | 74 | 0.18 (-0.35- 0.71) P=0.5 | 2.4 | 2.3 | 0 (0- 26.7) | NA | NA | -0.0048 P=0.64 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.01 | 0.15 | -0.07 | 0.94 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 27 | -0.28 (-0.89- 0.32) P=0.36 | 3 | 1 | 4.65e-05 (0- 74.7) | NA | NA | -0.029 P=0.22 |
MR-Egger | 27 | 0.28 (-0.79- 1.4) P=0.61 | 3 | 1 | 4.65e-05 (0- 74.7) | 31 | 0.18 | -0.029 P=0.22 |
Weighted median | 27 | -0.22 (-1.1- 0.64) P=0.62 | 3 | 1 | 4.65e-05 (0- 74.7) | NA | NA | -0.029 P=0.22 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.28 | 0.31 | -0.91 | 0.37 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | 2-Hydroxybutyric acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs1517432(T)/1:103100912* | intergenic | (0.57, 0.011, P = 4.7e-05, N = 7824) | (0.14, -0.065, P = 0.35, N = 859) |
rs12240227(A)/1:168586539 | intergenic | (0.02, 0.085, P = 4.1e-05, N = 7824) | (0.15, 0.013, P = 0.85, N = 859) |
rs627629(T)/1:238255344* | intergenic | (0.99, -0.11, P = 1e-05, N = 7824) | (0.78, -0.057, P = 0.31, N = 859) |
rs3956419(A)/1:83836149 | intergenic | (0.25, 0.017, P = 2.3e-05, N = 7824) | (0.056, 0.026, P = 0.81, N = 859) |
rs7895521(A)/10:55856021* | PCDH15 | (0.24, -0.014, P = 3.6e-05, N = 7824) | (0.075, -0.018, P = 0.85, N = 859) |
rs224069(T)/10:64508126* | intergenic | (0.6, 0.011, P = 2.4e-05, N = 7824) | (0.93, 0.029, P = 0.77, N = 859) |
rs10822058(A)/10:64523582* | intergenic | (0.55, -0.011, P = 3.4e-05, N = 7824) | (0.9, 0.0063, P = 0.94, N = 859) |
rs1509960(A)/10:64620689 | EGR2 | (0.083, 0.026, P = 9.6e-06, N = 7824) | (0.095, -0.16, P = 0.059, N = 859) |
rs7100223(T)/10:72788676* | intergenic | (0.55, 0.011, P = 3.4e-05, N = 7824) | (0.45, -0.0041, P = 0.93, N = 859) |
rs11255096(T)/10:7418393 | SFMBT2 | (0.61, 0.012, P = 1e-05, N = 7824) | (0.41, 0.018, P = 0.72, N = 859) |
rs1832826(T)/10:92122362* | intergenic | (0.92, -0.021, P = 3.8e-05, N = 7824) | (0.97, -0.17, P = 0.27, N = 859) |
rs12808830(A)/11:134735855 | intergenic | (0.93, -0.025, P = 4.6e-05, N = 7824) | (0.97, -0.004, P = 0.98, N = 859) |
rs4388837(T)/11:26722592 | SLC5A12 | (0.98, 0.11, P = 4.2e-06, N = 7824) | (0.84, 0.13, P = 0.045, N = 859) |
rs10161318(T)/12:107551308* | intergenic | (0.96, 0.032, P = 5.1e-06, N = 7824) | (0.74, 0.022, P = 0.69, N = 859) |
rs3851600(C)/12:13040944* | GPRC5A | (0.78, -0.015, P = 1.3e-05, N = 7824) | (0.65, -0.016, P = 0.74, N = 859) |
rs17122565(T)/12:48412410* | RP1-228P16.5 | (0.25, -0.016, P = 2.8e-06, N = 7824) | (0.4, 0.056, P = 0.25, N = 859) |
rs7985908(T)/13:100186218* | TM9SF2 | (0.12, 0.019, P = 1e-05, N = 7824) | (0.18, -0.033, P = 0.6, N = 859) |
rs4771522(A)/13:106774078* | intergenic | (0.58, 0.011, P = 2.6e-05, N = 7824) | (0.66, -0.001, P = 0.98, N = 859) |
rs2146690(A)/13:108403984 | FAM155A | (0.85, -0.025, P = 1.2e-05, N = 7824) | (0.8, 0.049, P = 0.42, N = 859) |
rs4943375(T)/13:31985820* | intergenic | (0.57, 0.012, P = 1.6e-05, N = 7824) | (0.92, -0.071, P = 0.41, N = 859) |
rs9532194(A)/13:38836709* | intergenic | (0.19, 0.017, P = 2.3e-05, N = 7824) | (0.02, -0.16, P = 0.37, N = 859) |
rs4883910(A)/13:72997704* | intergenic | (0.56, -0.011, P = 3.4e-05, N = 7824) | (0.62, 0.017, P = 0.73, N = 859) |
rs7141156(A)/14:33825093* | NPAS3 | (0.3, -0.015, P = 1.8e-05, N = 7824) | (0.31, -0.063, P = 0.22, N = 859) |
rs17101344(A)/14:33970832* | NPAS3 | (0.78, -0.019, P = 5.6e-08, N = 7824) | (0.91, 0.1, P = 0.23, N = 859) |
rs1959592(A)/14:43969823 | intergenic | (0.6, 0.012, P = 1.4e-05, N = 7824) | (0.6, 0.014, P = 0.78, N = 859) |
rs7401717(A)/14:54393139* | intergenic | (0.042, 0.037, P = 1.2e-05, N = 7824) | (0.3, 0.08, P = 0.13, N = 859) |
rs9652375(C)/14:76781841* | ESRRB | (0.57, 0.011, P = 3.1e-05, N = 7824) | (0.53, -0.055, P = 0.25, N = 859) |
rs2680344(A)/15:73653485 | HCN4 | (0.78, -0.015, P = 2.1e-05, N = 7824) | (0.39, 0.027, P = 0.59, N = 859) |
rs7205092(T)/16:80945538* | intergenic | (0.79, -0.015, P = 3.4e-05, N = 7824) | (0.77, 0.059, P = 0.3, N = 859) |
rs872745(A)/16:82578355* | intergenic | (0.41, -0.013, P = 4.9e-07, N = 7824) | (0.46, -0.05, P = 0.31, N = 859) |
rs9303041(T)/17:11786569 | DNAH9 | (0.17, -0.017, P = 4.2e-05, N = 7824) | (0.17, -0.0091, P = 0.88, N = 859) |
rs1684660(A)/17:42108351* | LSM12 | (0.54, -0.012, P = 1.3e-05, N = 7824) | (0.14, 0.074, P = 0.28, N = 859) |
rs473719(C)/18:22086993* | intergenic | (0.49, -0.012, P = 1.1e-05, N = 7824) | (0.15, -0.089, P = 0.19, N = 859) |
rs7228646(C)/18:23027460 | intergenic | (0.042, -0.031, P = 1.3e-05, N = 7824) | (0.13, -0.052, P = 0.47, N = 859) |
rs1791285(T)/18:57366183 | CCBE1 | (0.85, 0.019, P = 2.6e-05, N = 7824) | (0.86, 0.069, P = 0.34, N = 859) |
rs8085727(T)/18:72768073* | ZNF407 | (0.82, -0.015, P = 1.4e-05, N = 7824) | (0.72, -0.031, P = 0.56, N = 859) |
rs304729(A)/19:44084403* | XRCC1 | (0.2, 0.015, P = 9.2e-06, N = 7824) | (0.15, -0.03, P = 0.65, N = 859) |
rs729253(T)/2:117932237 | intergenic | (0.58, 0.026, P = 7.5e-06, N = 7824) | (0.19, 0.019, P = 0.75, N = 859) |
rs13430006(T)/2:219113089* | ARPC2 | (0.5, -0.012, P = 1.4e-05, N = 7824) | (0.11, 0.1, P = 0.19, N = 859) |
rs12470565(T)/2:240640112 | intergenic | (0.57, 0.017, P = 1.1e-06, N = 7824) | (0.64, 0.03, P = 0.56, N = 859) |
rs1260326(T)/2:27730940* | GCKR | (0.4, 0.014, P = 7.9e-08, N = 7824) | (0.14, -0.019, P = 0.79, N = 859) |
rs3817588(T)/2:27731212* | GCKR | (0.81, 0.016, P = 4.6e-06, N = 7824) | (0.97, 0.1, P = 0.46, N = 859) |
rs4477896(T)/2:33952413* | MYADML | (0.22, 0.015, P = 2.8e-05, N = 7824) | (0.38, -0.008, P = 0.88, N = 859) |
rs4521014(A)/2:35539417* | intergenic | (0.4, -0.017, P = 5.2e-07, N = 7824) | (0.36, 0.045, P = 0.37, N = 859) |
rs4670465(T)/2:35621644 | intergenic | (0.55, -0.014, P = 6.4e-08, N = 7824) | (0.8, 0.056, P = 0.34, N = 859) |
rs2861960(T)/2:80185514 | CTNNA2 | (0.87, -0.019, P = 8e-06, N = 7824) | (0.94, -0.087, P = 0.39, N = 859) |
rs7579456(T)/2:84362453* | intergenic | (0.42, -0.012, P = 1.3e-05, N = 7824) | (0.73, -0.027, P = 0.62, N = 859) |
rs16991515(A)/20:5915922 | TRMT6 | (0.95, 0.027, P = 4e-05, N = 7824) | (0.97, -0.097, P = 0.45, N = 859) |
rs1560921(T)/3:10674308* | ATP2B2 | (0.61, 0.011, P = 2.4e-05, N = 7824) | (0.56, 0.015, P = 0.76, N = 859) |
rs9847650(A)/3:137301920 | intergenic | (0.54, 0.011, P = 3e-05, N = 7824) | (0.29, 0.037, P = 0.49, N = 859) |
rs4683620(A)/3:141410864* | RP11-340E6.1 | (0.093, -0.025, P = 3.1e-05, N = 7824) | (0.1, 0.075, P = 0.35, N = 859) |
rs4680105(A)/3:153553043* | RP11-23D24.2 | (0.89, 0.019, P = 2.1e-05, N = 7824) | (0.98, -0.037, P = 0.82, N = 859) |
rs7614971(A)/3:34187468 | intergenic | (0.94, -0.025, P = 4.3e-05, N = 7824) | (0.9, -0.061, P = 0.45, N = 859) |
rs11721212(T)/3:53639939* | CACNA1D | (0.77, 0.014, P = 3.3e-05, N = 7824) | (0.89, -0.078, P = 0.32, N = 859) |
rs4697735(T)/4:10256289 | AC006499.8 | (0.017, 0.096, P = 5e-05, N = 7824) | (0.31, 0.021, P = 0.68, N = 859) |
rs4692861(A)/4:169061427 | ANXA10 | (0.41, -0.012, P = 1.5e-05, N = 7824) | (0.53, 0.05, P = 0.3, N = 859) |
rs2130909(A)/4:187588477 | FAT1 | (0.29, -0.018, P = 6.8e-06, N = 7824) | (0.5, 0.046, P = 0.35, N = 859) |
rs12503695(C)/4:86925463* | ARHGAP24 | (0.22, 0.029, P = 2.5e-05, N = 7824) | (0.48, 0.031, P = 0.52, N = 859) |
rs5745297(A)/5:10680997* | DAP | (0.08, -0.022, P = 2e-05, N = 7824) | (0.013, 0.075, P = 0.72, N = 859) |
rs40104(T)/5:115795101* | SEMA6A | (0.91, 0.029, P = 2.6e-05, N = 7824) | (0.75, -0.056, P = 0.32, N = 859) |
rs163920(T)/5:141397272* | GNPDA1 | (0.067, 0.029, P = 1.2e-05, N = 7824) | (0.061, 0.16, P = 0.11, N = 859) |
rs864969(A)/5:56364907* | intergenic | (0.8, 0.015, P = 1.4e-05, N = 7824) | (0.71, 0.071, P = 0.18, N = 859) |
rs287884(A)/6:157124080* | ARID1B | (0.44, -0.014, P = 2.4e-05, N = 7824) | (0.54, 0.035, P = 0.47, N = 859) |
rs9347438(T)/6:161083633* | LPA | (0.44, 0.011, P = 3.9e-05, N = 7824) | (0.55, -0.01, P = 0.83, N = 859) |
rs9477241(T)/6:16873952* | intergenic | (0.026, 0.041, P = 4.5e-05, N = 7824) | (0.15, 0.00062, P = 0.99, N = 859) |
rs6934188(T)/6:19611159* | RP1-167F1.2 | (0.5, 0.011, P = 3.8e-05, N = 7824) | (0.48, -0.031, P = 0.53, N = 859) |
rs2067997(T)/6:35471246* | TULP1 | (0.87, -0.021, P = 9.4e-07, N = 7824) | (0.8, 0.076, P = 0.21, N = 859) |
rs2073465(A)/6:74229792* | EEF1A1 | (0.81, 0.014, P = 4.2e-05, N = 7824) | (0.91, -0.18, P = 0.04, N = 859) |
rs9389466(A)/6:96245744* | intergenic | (0.028, 0.043, P = 8e-06, N = 7824) | (0.057, -0.3, P = 0.0046, N = 859) |
rs12542467(A)/8:124624056* | CTD-2552K11.2 | (0.54, 0.011, P = 4.9e-05, N = 7824) | (0.25, -0.092, P = 0.1, N = 859) |
rs13282582(T)/8:128577283* | intergenic | (0.045, 0.059, P = 2.4e-05, N = 7824) | (0.046, 0.14, P = 0.23, N = 859) |
rs12677068(T)/8:29787927* | FAM183CP | (0.97, 0.038, P = 3.3e-05, N = 7824) | (0.98, 0.14, P = 0.45, N = 859) |
rs2719320(A)/8:34187152* | RP1-84O15.2 | (0.81, -0.015, P = 2.4e-05, N = 7824) | (0.52, -2.7e-05, P = 1, N = 859) |
rs4376550(T)/9:109178658* | RP11-308N19.1 | (0.34, -0.014, P = 4.5e-05, N = 7824) | (0.48, 0.0021, P = 0.97, N = 859) |
rs7867311(A)/9:11790536* | intergenic | (0.59, 0.014, P = 1.7e-05, N = 7824) | (0.69, -0.0011, P = 0.98, N = 859) |
rs10975189(T)/9:5590953 | RP11-574F11.3 | (0.059, 0.026, P = 1.9e-05, N = 7824) | (0.072, 0.085, P = 0.37, N = 859) |
rs952045(T)/9:73161881* | TRPM3 | (0.95, -0.029, P = 2e-05, N = 7824) | (0.77, -0.046, P = 0.42, N = 859) |
rs2224580(A)/9:8142291* | intergenic | (0.22, 0.016, P = 1.1e-05, N = 7824) | (0.34, 0.033, P = 0.5, N = 859) |
rs11788042(A)/9:81650381 | KRT18P24 | (0.24, 0.016, P = 1.9e-06, N = 7824) | (0.59, -0.0091, P = 0.86, N = 859) |
rs876927(T)/9:88117073* | intergenic | (0.21, 0.016, P = 5.4e-06, N = 7824) | (0.29, -0.1, P = 0.059, N = 859) |
rs2841680(A)/9:96161642 | intergenic | (0.77, 0.015, P = 2e-05, N = 7824) | (0.82, 0.068, P = 0.3, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 81 | 0.26 (-0.16- 0.69) P=0.23 | 0.81 | 0.84 | 0 (0- 29.5) | NA | NA | -0.022 P=0.032 |
MR-Egger | 81 | 0.79 (0.14- 1.5) P=0.021 | 0.81 | 0.84 | 0 (0- 29.5) | 66 | 0.85 | -0.022 P=0.032 |
Weighted median | 81 | 0.41 (-0.29- 1.1) P=0.25 | 0.81 | 0.84 | 0 (0- 29.5) | NA | NA | -0.022 P=0.032 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.26 | 0.22 | 1.2 | 0.23 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 25 | 0.45 (-0.064- 0.97) P=0.086 | 1 | 0.32 | 0 (0- 37.1) | NA | NA | -0.012 P=0.5 |
MR-Egger | 25 | 0.67 (-0.22- 1.6) P=0.15 | 1 | 0.32 | 0 (0- 37.1) | 16 | 0.87 | -0.012 P=0.5 |
Weighted median | 25 | 0.31 (-0.58- 1.2) P=0.5 | 1 | 0.32 | 0 (0- 37.1) | NA | NA | -0.012 P=0.5 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.45 | 0.26 | 1.72 | 0.1 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Beta-Alanine (Shin et al/Long et al) | eGFR (CSSCD) |
rs4655453(T)/1:213785004* | AL592063.1 | (0.091, 0.8, P = 3e-06, N = 1950) | (0.031, -0.083, P = 0.54, N = 859) |
rs34954945(T)/1:34259238 | CSMD2 | (0.065, 0.17, P = 2.1e-06, N = 1950) | (0.16, 0.097, P = 0.15, N = 859) |
rs10915665(T)/1:4093717 | intergenic | (0.13, -0.2, P = 6.9e-06, N = 1950) | (0.3, 0.013, P = 0.81, N = 859) |
rs7911319(G)/10:133273482 | intergenic | (0.083, 0.58, P = 3.7e-06, N = 1950) | (0.073, -0.088, P = 0.35, N = 859) |
rs79254065(A)/10:71415238 | intergenic | (0.015, -0.26, P = 1.6e-06, N = 1950) | (0.097, -0.13, P = 0.11, N = 859) |
rs12560861(G)/13:21073518 | CRYL1 | (0.2, -0.46, P = 4e-06, N = 1950) | (0.15, 0.0028, P = 0.97, N = 859) |
rs7150563(C)/14:98762345* | intergenic | (0.4, -0.29, P = 2.8e-06, N = 1950) | (0.37, 0.076, P = 0.13, N = 859) |
rs4558436(C)/16:7336322 | RBFOX1 | (0.88, -0.66, P = 5.5e-06, N = 1950) | (0.92, -0.27, P = 0.0028, N = 859) |
rs62079516(G)/17:80341546 | RP13-20L14.1 | (0.19, -0.27, P = 8e-06, N = 1950) | (0.085, -0.048, P = 0.58, N = 859) |
rs62132077(C)/2:17766094* | VSNL1 | (0.017, 0.17, P = 4.7e-06, N = 1950) | (0.028, 0.25, P = 0.08, N = 859) |
rs2327549(T)/20:12354153* | intergenic | (0.98, 0.81, P = 7.5e-06, N = 1950) | (0.54, 0.063, P = 0.19, N = 859) |
rs5753833(T)/22:32355076 | YWHAH | (0.17, -0.28, P = 7.5e-06, N = 1950) | (0.096, -0.018, P = 0.83, N = 859) |
rs6800284(T)/3:30758956* | intergenic | (0.44, 0.22, P = 1.2e-21, N = 1950) | (0.79, 0.0081, P = 0.89, N = 859) |
rs10676924(TTG)/3:30798395 | GADL1 | (0.78, 0.35, P = 1.3e-06, N = 1950) | (0.96, 0.31, P = 0.011, N = 859) |
rs58714970(TC)/3:30808056* | GADL1 | (0.43, -0.17, P = 7.4e-07, N = 1950) | (0.47, 0.011, P = 0.83, N = 859) |
rs9968671(T)/5:39141990* | FYB | (0.2, -0.17, P = 6.8e-06, N = 1950) | (0.37, -0.057, P = 0.28, N = 859) |
rs535532587(CA)/5:79976241 | MSH3 | (0.066, 0.52, P = 7.1e-06, N = 1950) | (0.18, 0.017, P = 0.79, N = 859) |
rs7037419(T)/9:103103281 | TEX10 | (0.14, 0.16, P = 4.3e-06, N = 1950) | (0.16, 0.015, P = 0.82, N = 859) |
rs12341435(G)/9:38575602 | ANKRD18A | (0.027, -0.65, P = 2.4e-06, N = 1950) | (0.068, 0.017, P = 0.86, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 19 | 0.07 (-0.02- 0.16) P=0.13 | 65 | 60 | 28.1 (0- 83.2) | NA | NA | 0.013 P=0.72 |
MR-Egger | 19 | 0.043 (-0.13- 0.22) P=0.64 | 65 | 60 | 28.1 (0- 83.2) | 27 | 0.065 | 0.013 P=0.72 |
Weighted median | 19 | 0.064 (-0.048- 0.18) P=0.26 | 65 | 60 | 28.1 (0- 83.2) | NA | NA | 0.013 P=0.72 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.07 | 0.05 | 1.53 | 0.14 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 12 | 0.11 (-0.031- 0.25) P=0.13 | 65 | 38 | 37.9 (0- 83.2) | NA | NA | 0.033 P=0.61 |
MR-Egger | 12 | 0.032 (-0.29- 0.35) P=0.85 | 65 | 38 | 37.9 (0- 83.2) | 17 | 0.069 | 0.033 P=0.61 |
Weighted median | 12 | 0.0066 (-0.16- 0.17) P=0.94 | 65 | 38 | 37.9 (0- 83.2) | NA | NA | 0.033 P=0.61 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.11 | 0.07 | 1.52 | 0.16 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Betaine (Shin et al/Long et al) | eGFR (CSSCD) |
rs1538475(A)/1:187534056 | FDPSP1 | (0.68, 0.01, P = 2.4e-05, N = 7824) | (0.77, 0.036, P = 0.53, N = 859) |
rs12569219(A)/1:203762990* | ZBED6 | (0.16, -0.012, P = 5.8e-06, N = 7824) | (0.14, -0.064, P = 0.35, N = 859) |
rs650264(T)/1:20911830 | CDA | (0.097, -0.015, P = 2.1e-05, N = 7824) | (0.25, 0.065, P = 0.24, N = 859) |
rs943523(A)/1:53947922 | intergenic | (0.89, -0.014, P = 4.7e-05, N = 7824) | (0.44, 0.081, P = 0.094, N = 859) |
rs232782(A)/1:59128237* | MYSM1 | (0.17, 0.011, P = 3e-05, N = 7824) | (0.41, -0.026, P = 0.57, N = 859) |
rs7896866(A)/10:101339828 | intergenic | (0.3, 0.011, P = 8.3e-06, N = 7824) | (0.42, -0.046, P = 0.35, N = 859) |
rs1926205(A)/10:20210789 | PLXDC2 | (0.029, 0.38, P = 4.9e-06, N = 1958) | (0.065, 0.075, P = 0.45, N = 859) |
rs7126003(T)/11:10888433* | ZBED5-AS1 | (0.63, 0.018, P = 2.6e-06, N = 7824) | (0.79, 0.013, P = 0.82, N = 859) |
rs7931762(A)/11:43197753* | HNRNPKP3 | (0.84, -0.011, P = 3.6e-05, N = 7824) | (0.81, -0.01, P = 0.87, N = 859) |
rs11111121(A)/12:102397730 | DRAM1 | (0.99, -0.066, P = 3.8e-05, N = 7824) | (0.95, 0.065, P = 0.57, N = 859) |
rs2291918(T)/12:280761 | IQSEC3 | (0.38, 0.011, P = 1.1e-05, N = 7824) | (0.4, 0.052, P = 0.3, N = 859) |
rs709217(T)/12:92526809 | C12orf79 | (0.5, -0.0073, P = 3.8e-05, N = 7824) | (0.51, 0.085, P = 0.079, N = 859) |
rs8002031(A)/13:113285643* | intergenic | (0.026, 0.16, P = 7.8e-07, N = 1958) | (0.19, -0.0084, P = 0.89, N = 859) |
rs9600122(C)/13:73968602 | intergenic | (0.92, -0.017, P = 4.3e-05, N = 7824) | (0.84, -0.035, P = 0.58, N = 859) |
rs3861122(T)/13:74076150 | LINC00393 | (0.16, -0.011, P = 3.4e-05, N = 7824) | (0.1, -0.16, P = 0.039, N = 859) |
rs16944928(A)/13:91572636 | LINC00410 | (0.98, -0.037, P = 3.8e-05, N = 7824) | (0.86, 0.013, P = 0.85, N = 859) |
rs12887798(T)/14:87693931 | intergenic | (0.19, -0.17, P = 1.9e-06, N = 1958) | (0.2, 0.023, P = 0.7, N = 859) |
rs17223831(A)/14:90601920 | KCNK13 | (0.11, 0.014, P = 4.9e-05, N = 7824) | (0.072, 0.037, P = 0.7, N = 859) |
rs1285777(A)/14:91802285* | CCDC88C | (0.92, -0.016, P = 1.1e-05, N = 7824) | (0.9, 0.0015, P = 0.99, N = 859) |
rs8021497(A)/14:93567618* | ITPK1 | (0.21, 0.019, P = 4.7e-05, N = 7824) | (0.45, -0.0079, P = 0.87, N = 859) |
rs5814078(GTTGT)/15:81935875 | CTD-2034I4.1 | (0.49, 0.2, P = 8.8e-06, N = 1958) | (0.93, -0.023, P = 0.8, N = 859) |
rs6602982(A)/15:84257744* | SH3GL3 | (0.49, -0.0074, P = 3.4e-05, N = 7824) | (0.54, 0.0018, P = 0.97, N = 859) |
rs12447365(A)/16:14462949* | RP11-65J21.1 | (0.21, -0.011, P = 2.9e-05, N = 7824) | (0.069, 0.061, P = 0.52, N = 859) |
rs10153066(T)/16:7257971* | RBFOX1 | (0.44, 0.0085, P = 2.1e-06, N = 7824) | (0.45, -0.088, P = 0.07, N = 859) |
rs984327(A)/16:7772217* | SNORA40 | (0.71, -0.017, P = 4e-05, N = 7824) | (0.56, -0.0077, P = 0.87, N = 859) |
rs8059060(A)/16:89191264 | ACSF3 | (0.89, 0.025, P = 3.5e-05, N = 7824) | (0.61, -0.049, P = 0.31, N = 859) |
rs4646359(T)/17:17470609* | PEMT | (0.53, -0.0083, P = 3.2e-06, N = 7824) | (0.32, -0.016, P = 0.76, N = 859) |
rs2345424(A)/17:71233783 | C17orf80 | (0.99, -0.079, P = 2.3e-05, N = 7824) | (0.8, 0.022, P = 0.71, N = 859) |
rs2729411(T)/18:28142042 | intergenic | (0.24, 0.018, P = 4.9e-05, N = 7824) | (0.54, -0.0054, P = 0.91, N = 859) |
rs8090293(A)/18:4031916 | DLGAP1 | (0.53, -0.019, P = 2e-05, N = 7824) | (0.52, 0.061, P = 0.2, N = 859) |
rs7229475(G)/18:6514018* | C18orf64 | (0.29, -1, P = 3.4e-06, N = 1958) | (0.66, 0.025, P = 0.62, N = 859) |
rs7246788(T)/19:18575450* | ELL | (0.2, 0.011, P = 1.4e-05, N = 7824) | (0.22, -0.13, P = 0.024, N = 859) |
rs9305014(A)/19:24306763 | ZNF254 | (0.92, 0.017, P = 4.7e-05, N = 7824) | (0.65, 0.072, P = 0.16, N = 859) |
rs12151827(T)/2:135673387* | CCNT2 | (0.82, -0.014, P = 6.3e-08, N = 7824) | (0.76, 0.044, P = 0.43, N = 859) |
rs724394(A)/2:139854856 | intergenic | (0.82, -0.011, P = 2e-05, N = 7824) | (0.93, 0.09, P = 0.33, N = 859) |
rs78989095(A)/2:211534417* | CPS1 | (0.037, 0.12, P = 4.1e-06, N = 1958) | (0.066, -0.096, P = 0.32, N = 859) |
rs715(T)/2:211543055* | CPS1 | (0.71, 0.022, P = 2.1e-19, N = 7824) | (0.81, -0.061, P = 0.33, N = 859) |
rs11887861(A)/2:211548693* | CPS1 | (0.34, 0.013, P = 1.4e-07, N = 7824) | (0.37, -0.11, P = 0.026, N = 859) |
rs13021675(T)/2:211661935* | intergenic | (0.2, -0.012, P = 1.8e-06, N = 7824) | (0.16, -0.072, P = 0.28, N = 859) |
rs11685209(T)/2:77658045 | LRRTM4 | (0.37, -0.016, P = 2.9e-05, N = 7824) | (0.51, -0.032, P = 0.5, N = 859) |
rs6118048(A)/20:8051081 | intergenic | (0.16, 0.011, P = 4.5e-05, N = 7824) | (0.16, -0.017, P = 0.79, N = 859) |
rs8131547(T)/21:44320989 | NDUFV3 | (0.53, 0.01, P = 1.3e-05, N = 7824) | (0.71, -0.0069, P = 0.89, N = 859) |
rs2851391(T)/21:44487404* | CBS | (0.46, -0.012, P = 1.1e-11, N = 7824) | (0.24, -0.027, P = 0.63, N = 859) |
rs134790(T)/22:27653397* | intergenic | (0.84, -0.011, P = 1.9e-05, N = 7824) | (0.91, -0.17, P = 0.049, N = 859) |
rs2227089(T)/22:36645089* | APOL1 | (0.4, -0.2, P = 3.9e-07, N = 1958) | (0.28, 0.0031, P = 0.95, N = 859) |
rs16835527(C)/3:124205980 | KALRN | (0.82, -0.011, P = 1.8e-05, N = 7824) | (0.95, 0.1, P = 0.35, N = 859) |
rs2700868(T)/3:182440135* | intergenic | (0.15, 0.26, P = 5.9e-06, N = 1958) | (0.2, 0.095, P = 0.11, N = 859) |
rs11410898(AT)/3:184771382 | VPS8 | (0.26, -0.17, P = 8.7e-06, N = 1958) | (0.15, 0.022, P = 0.75, N = 859) |
rs10937433(C)/3:190177112 | intergenic | (0.5, 0.008, P = 6.6e-06, N = 7824) | (0.68, 0.069, P = 0.18, N = 859) |
rs1195362(A)/3:190823801 | intergenic | (0.95, -0.041, P = 3.4e-05, N = 7824) | (0.99, 0.062, P = 0.78, N = 859) |
rs7668550(T)/4:104384356* | intergenic | (0.016, -0.037, P = 5.5e-06, N = 7824) | (0.24, -0.064, P = 0.25, N = 859) |
rs13104073(T)/4:127695984 | intergenic | (0.01, -0.087, P = 3.5e-05, N = 7824) | (0.069, 0.049, P = 0.61, N = 859) |
rs10033669(T)/4:177189004 | ASB5 | (0.089, 0.017, P = 1.5e-05, N = 7824) | (0.08, -0.059, P = 0.51, N = 859) |
rs17494639(T)/4:80218062 | LINC01088 | (0.83, -0.011, P = 3.2e-05, N = 7824) | (0.97, 0.21, P = 0.1, N = 859) |
rs11943623(A)/4:86554948 | ARHGAP24 | (0.17, -0.011, P = 8.4e-06, N = 7824) | (0.17, -0.11, P = 0.081, N = 859) |
rs17481649(T)/5:115305573* | AQPEP | (0.063, -0.019, P = 1.1e-05, N = 7824) | (0.078, 0.063, P = 0.48, N = 859) |
rs154555(G)/5:115797852 | SEMA6A | (0.57, -0.46, P = 1.7e-06, N = 1958) | (0.26, -0.052, P = 0.34, N = 859) |
rs4476723(T)/5:11796865* | CTNND2 | (0.98, -0.16, P = 5.7e-06, N = 1958) | (0.63, -0.081, P = 0.11, N = 859) |
rs34199803(CTT)/5:122043333 | RP11-166A12.1 | (0.014, -0.9, P = 7.9e-07, N = 1958) | (0.48, 0.024, P = 0.62, N = 859) |
rs164372(T)/5:160621043 | intergenic | (0.8, 0.012, P = 2.6e-06, N = 7824) | (0.63, -0.022, P = 0.66, N = 859) |
rs2319470(A)/5:24532664 | CDH10 | (0.51, -0.0074, P = 3.3e-05, N = 7824) | (0.29, -0.046, P = 0.39, N = 859) |
rs3797248(A)/5:53509186* | ARL15 | (0.17, 0.012, P = 4.6e-06, N = 7824) | (0.1, -0.086, P = 0.29, N = 859) |
rs6862283(T)/5:78319638* | DMGDH | (0.7, 0.019, P = 7.9e-16, N = 7824) | (0.34, 0.043, P = 0.4, N = 859) |
rs16876394(T)/5:78346769* | DMGDH | (0.9, 0.03, P = 1.5e-19, N = 7824) | (0.91, -0.064, P = 0.44, N = 859) |
rs16876498(T)/5:78402594* | DMGDH | (0.9, 0.03, P = 2.5e-19, N = 7824) | (0.89, 0.00093, P = 0.99, N = 859) |
rs1275103(C)/5:78448105* | DMGDH | (0.61, -0.015, P = 6.8e-11, N = 7824) | (0.35, -0.051, P = 0.31, N = 859) |
rs17206977(A)/5:85387218 | PTP4A1P4 | (0.92, -0.017, P = 2.9e-05, N = 7824) | (0.97, -0.052, P = 0.69, N = 859) |
rs7763624(A)/6:157418960 | ARID1B | (0.56, -0.2, P = 5e-06, N = 1958) | (0.53, 0.013, P = 0.79, N = 859) |
rs9457843(T)/6:160560933* | SLC22A1 | (0.12, 0.015, P = 1.1e-05, N = 7824) | (0.14, 0.016, P = 0.82, N = 859) |
rs662138(C)/6:160564476* | SLC22A1 | (0.83, 0.011, P = 1.3e-05, N = 7824) | (0.95, 0.099, P = 0.35, N = 859) |
rs203887(T)/6:28021269 | OR2B8P | (0.23, -0.011, P = 2.3e-05, N = 7824) | (0.39, -0.016, P = 0.75, N = 859) |
rs1535039(T)/6:29411432* | OR11A1 | (0.91, 0.018, P = 4.5e-07, N = 7824) | (0.99, 0.16, P = 0.45, N = 859) |
rs7751856(A)/6:32698988* | HLA-DQB3 | (0.52, 0.0074, P = 3.7e-05, N = 7824) | (0.31, 0.051, P = 0.33, N = 859) |
rs9462856(T)/6:42926024* | GNMT | (0.47, -0.0093, P = 2e-07, N = 7824) | (0.14, -0.089, P = 0.19, N = 859) |
rs4327704(A)/6:57920632 | intergenic | (0.95, -0.022, P = 9.9e-06, N = 7824) | (0.98, -0.15, P = 0.36, N = 859) |
rs410300(G)/6:9030949 | intergenic | (0.25, -0.23, P = 8.3e-06, N = 1958) | (0.18, 0.038, P = 0.53, N = 859) |
rs9445037(T)/6:93587599* | intergenic | (0.53, -0.0077, P = 1.7e-05, N = 7824) | (0.16, -0.1, P = 0.12, N = 859) |
rs2396726(T)/7:114021410 | FOXP2 | (0.54, -0.018, P = 4.5e-06, N = 7824) | (0.21, 0.04, P = 0.5, N = 859) |
rs7781104(T)/7:145158487 | intergenic | (0.27, 0.021, P = 7.8e-06, N = 7824) | (0.51, 0.035, P = 0.46, N = 859) |
rs2304396(C)/8:131833823* | ADCY8 | (0.083, 0.26, P = 4e-06, N = 1958) | (0.092, -0.012, P = 0.88, N = 859) |
rs2705084(A)/8:17386831* | SLC7A2 | (0.44, 0.0073, P = 4e-05, N = 7824) | (0.62, -0.012, P = 0.81, N = 859) |
rs7822571(T)/8:40576179* | ZMAT4 | (0.46, -0.0074, P = 3.1e-05, N = 7824) | (0.4, -0.057, P = 0.25, N = 859) |
rs9886534(T)/8:40676655* | ZMAT4 | (0.51, -0.0079, P = 8.7e-06, N = 7824) | (0.29, 0.0047, P = 0.93, N = 859) |
rs12708158(T)/8:54835697 | RGS20 | (0.91, 0.026, P = 4.3e-05, N = 7824) | (0.97, 0.14, P = 0.37, N = 859) |
rs523224(T)/8:93522691* | RP11-587H10.1 | (0.19, -0.011, P = 2.2e-05, N = 7824) | (0.042, -0.14, P = 0.26, N = 859) |
rs1545203(T)/9:112119690* | intergenic | (0.081, -0.017, P = 3.1e-05, N = 7824) | (0.022, -0.26, P = 0.12, N = 859) |
rs2249768(A)/9:24542184 | IZUMO3 | (0.3, 0.19, P = 7.7e-06, N = 1958) | (0.31, 0.019, P = 0.71, N = 859) |
rs13292748(C)/9:8727087 | PTPRD | (0.14, -0.21, P = 9.9e-06, N = 1958) | (0.026, -0.084, P = 0.58, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 88 | -0.0034 (-0.064- 0.058) P=0.91 | 23 | 71 | 3.69e-05 (0- 96.4) | NA | NA | 0.0026 P=0.72 |
MR-Egger | 88 | -0.0085 (-0.077- 0.06) P=0.81 | 23 | 71 | 3.69e-05 (0- 96.4) | 82 | 0.6 | 0.0026 P=0.72 |
Weighted median | 88 | -0.026 (-0.11- 0.058) P=0.55 | 23 | 71 | 3.69e-05 (0- 96.4) | NA | NA | 0.0026 P=0.72 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0 | 0.03 | -0.11 | 0.91 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 45 | -0.0076 (-0.088- 0.073) P=0.85 | 11 | 24 | 0.00206 (0- 96.3) | NA | NA | -0.0026 P=0.8 |
MR-Egger | 45 | -0.002 (-0.1- 0.096) P=0.97 | 11 | 24 | 0.00206 (0- 96.3) | 37 | 0.74 | -0.0026 P=0.8 |
Weighted median | 45 | -0.013 (-0.14- 0.12) P=0.85 | 11 | 24 | 0.00206 (0- 96.3) | NA | NA | -0.0026 P=0.8 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.01 | 0.04 | -0.19 | 0.85 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-Carnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs12725366(A)/1:105904171 | intergenic | (0.48, -0.0041, P = 5.5e-06, N = 7824) | (0.37, 0.031, P = 0.53, N = 859) |
rs3754439(A)/1:110615094 | ALX3 | (0.4, -0.0066, P = 2.3e-13, N = 7824) | (0.26, -0.02, P = 0.72, N = 859) |
rs1466788(A)/1:110618730 | STRIP1 | (0.41, -0.0074, P = 3.1e-16, N = 7824) | (0.3, -0.013, P = 0.8, N = 859) |
rs17032183(A)/1:114603297 | intergenic | (0.096, -0.0071, P = 3.9e-05, N = 7824) | (0.21, 0.044, P = 0.45, N = 859) |
rs61810757(C)/1:115846181 | NGF | (0.81, -0.24, P = 8.8e-06, N = 1954) | (0.91, -0.0089, P = 0.92, N = 859) |
rs17370344(A)/1:164263810 | intergenic | (0.64, -0.0047, P = 1.7e-07, N = 7824) | (0.84, 0.12, P = 0.082, N = 859) |
rs4534357(A)/1:168167139 | TIPRL | (0.84, 0.0069, P = 1.8e-05, N = 7824) | (0.61, 0.03, P = 0.56, N = 859) |
rs17613936(T)/1:193938169 | intergenic | (0.16, 0.19, P = 8.2e-06, N = 1954) | (0.027, 0.064, P = 0.66, N = 859) |
rs10920115(T)/1:201071884 | CACNA1S | (0.55, 0.0044, P = 1.6e-06, N = 7824) | (0.34, 0.0011, P = 0.98, N = 859) |
rs10800765(T)/1:201216597 | intergenic | (0.46, -0.0039, P = 1.8e-05, N = 7824) | (0.12, -0.074, P = 0.31, N = 859) |
rs7551550(A)/1:20437764 | PLA2G2D | (0.47, -0.004, P = 1.1e-05, N = 7824) | (0.66, -0.02, P = 0.69, N = 859) |
rs12722987(A)/1:20455220* | intergenic | (0.13, -0.0071, P = 1.7e-05, N = 7824) | (0.18, 0.024, P = 0.71, N = 859) |
rs1762470(T)/1:208423850* | RP11-2P2.1 | (0.55, 0.0037, P = 4.1e-05, N = 7824) | (0.81, 0.022, P = 0.72, N = 859) |
rs1999890(A)/1:210510894 | HHAT | (0.5, 0.004, P = 1e-05, N = 7824) | (0.21, -0.012, P = 0.85, N = 859) |
rs2165993(A)/1:211730036 | intergenic | (0.47, -0.004, P = 1.5e-05, N = 7824) | (0.18, 0.0019, P = 0.98, N = 859) |
rs4638188(T)/1:212045896 | intergenic | (0.47, -0.0037, P = 4.2e-05, N = 7824) | (0.16, 0.046, P = 0.48, N = 859) |
rs2492788(T)/1:212844187* | intergenic | (0.55, 0.0049, P = 4.6e-08, N = 7824) | (0.75, 0.076, P = 0.17, N = 859) |
rs1910488(T)/1:213524165 | intergenic | (0.6, 0.0037, P = 4.1e-05, N = 7824) | (0.34, 0.081, P = 0.12, N = 859) |
rs4504898(T)/1:221831403* | intergenic | (0.39, -0.0041, P = 7e-06, N = 7824) | (0.48, 0.03, P = 0.53, N = 859) |
rs309517(A)/1:23251592 | RP1-74M1.3 | (0.62, -1.1, P = 4.8e-06, N = 1954) | (0.77, -0.027, P = 0.64, N = 859) |
rs6426779(T)/1:23310485 | intergenic | (0.49, -0.0039, P = 1.3e-05, N = 7824) | (0.67, 0.04, P = 0.44, N = 859) |
rs10802528(T)/1:236506815 | EDARADD | (0.45, -0.0047, P = 2e-07, N = 7824) | (0.62, -0.046, P = 0.36, N = 859) |
rs12128699(C)/1:238258461 | intergenic | (0.65, -0.24, P = 5.5e-06, N = 1954) | (0.37, -0.023, P = 0.64, N = 859) |
rs259615(C)/1:238433753 | RP11-136B18.1 | (0.66, 0.16, P = 2.8e-06, N = 1954) | (0.95, 0.23, P = 0.036, N = 859) |
rs879067(T)/1:244392816* | intergenic | (0.44, 0.004, P = 7.5e-06, N = 7824) | (0.5, -0.029, P = 0.55, N = 859) |
rs1507101(A)/1:25251326* | RUNX3 | (0.57, 0.004, P = 9.6e-06, N = 7824) | (0.28, 0.12, P = 0.031, N = 859) |
rs3480(A)/1:33328165 | S100PBP | (0.6, 0.0037, P = 4.4e-05, N = 7824) | (0.49, 0.033, P = 0.49, N = 859) |
rs2359233(A)/1:34770104 | intergenic | (0.37, 0.0038, P = 2.9e-05, N = 7824) | (0.7, -0.084, P = 0.12, N = 859) |
rs10890169(T)/1:42392584 | HIVEP3 | (0.53, 0.0038, P = 2.9e-05, N = 7824) | (0.61, 0.068, P = 0.17, N = 859) |
rs778423(C)/1:56656812 | intergenic | (0.53, -0.0043, P = 2.3e-06, N = 7824) | (0.21, 0.047, P = 0.43, N = 859) |
rs844072(T)/1:64755056 | intergenic | (0.44, -0.85, P = 4.2e-06, N = 1954) | (0.68, 0.011, P = 0.82, N = 859) |
rs1034251(A)/1:64905833 | intergenic | (0.34, -0.24, P = 5.2e-06, N = 1954) | (0.15, 0.0097, P = 0.88, N = 859) |
rs17127807(A)/1:66088370* | LEPR | (0.99, 0.036, P = 4.8e-05, N = 7824) | (0.86, -0.037, P = 0.59, N = 859) |
rs12135162(T)/1:91905203 | intergenic | (0.62, 0.0037, P = 4e-05, N = 7824) | (0.52, -0.012, P = 0.8, N = 859) |
rs12744011(A)/1:92086966 | intergenic | (0.48, -0.0039, P = 2.3e-05, N = 7824) | (0.74, -0.029, P = 0.6, N = 859) |
rs11589858(T)/1:92786742 | RPAP2 | (0.36, -0.0041, P = 5.3e-06, N = 7824) | (0.12, -0.058, P = 0.44, N = 859) |
rs10875102(A)/1:98159558 | DPYD | (0.54, -0.0042, P = 4.6e-06, N = 7824) | (0.18, -0.049, P = 0.43, N = 859) |
rs10883890(C)/10:105390021 | SH3PXD2A | (0.45, 0.0046, P = 4.3e-07, N = 7824) | (0.43, -0.051, P = 0.31, N = 859) |
rs4284335(A)/10:109888793 | intergenic | (0.41, -0.0046, P = 3.5e-07, N = 7824) | (0.75, -0.08, P = 0.15, N = 859) |
rs4451642(A)/10:113111516 | RP11-381K7.1 | (0.11, 0.0071, P = 4e-05, N = 7824) | (0.083, -0.022, P = 0.8, N = 859) |
rs2254426(A)/10:119683609 | intergenic | (0.4, 0.0037, P = 3.9e-05, N = 7824) | (0.44, -0.011, P = 0.82, N = 859) |
rs1929667(T)/10:121966798 | intergenic | (0.99, -0.2, P = 2.1e-06, N = 1954) | (0.71, -0.15, P = 0.0041, N = 859) |
rs10749365(C)/10:122005859 | intergenic | (0.99, 0.42, P = 1e-06, N = 1954) | (0.92, -0.17, P = 0.05, N = 859) |
rs11257841(T)/10:12550970 | CAMK1D | (0.56, -0.0039, P = 1.3e-05, N = 7824) | (0.67, 0.074, P = 0.15, N = 859) |
rs4929820(A)/10:125828819* | CHST15 | (0.34, -0.0039, P = 1.4e-05, N = 7824) | (0.3, -0.021, P = 0.69, N = 859) |
rs4531372(A)/10:128257882 | C10orf90 | (0.43, -0.0045, P = 7.1e-07, N = 7824) | (0.13, 0.0096, P = 0.89, N = 859) |
rs2225978(A)/10:130286830* | intergenic | (0.52, -0.004, P = 9.1e-06, N = 7824) | (0.75, 0.02, P = 0.72, N = 859) |
rs2767290(A)/10:130470565 | intergenic | (0.35, 0.004, P = 8.3e-06, N = 7824) | (0.44, -0.032, P = 0.5, N = 859) |
rs6602640(T)/10:13227604 | MCM10 | (0.88, 0.008, P = 2.5e-06, N = 7824) | (0.77, -0.063, P = 0.27, N = 859) |
rs12245254(T)/10:132500555* | intergenic | (0.44, 0.0043, P = 1.9e-06, N = 7824) | (0.29, 0.14, P = 0.01, N = 859) |
rs3810964(A)/10:135000159 | KNDC1 | (0.53, -0.0038, P = 2.4e-05, N = 7824) | (0.85, -0.007, P = 0.92, N = 859) |
rs1218444(T)/10:14368831 | FRMD4A | (0.86, 0.2, P = 9e-06, N = 1954) | (0.82, 0.049, P = 0.42, N = 859) |
rs10828408(A)/10:23372303 | intergenic | (0.6, -0.0037, P = 4.9e-05, N = 7824) | (0.63, -0.037, P = 0.47, N = 859) |
rs377294850(TA)/10:24441655 | KIAA1217 | (0.089, -0.55, P = 7.8e-06, N = 1954) | (0.85, 0.0016, P = 0.98, N = 859) |
rs9419445(T)/10:2529326 | intergenic | (0.53, 0.0042, P = 3.5e-06, N = 7824) | (0.8, 0.063, P = 0.29, N = 859) |
rs645838(A)/10:3560515 | intergenic | (0.13, 0.0067, P = 4.9e-05, N = 7824) | (0.16, 0.038, P = 0.57, N = 859) |
rs12246131(A)/10:45993782* | MARCH8 | (0.78, 0.008, P = 2.4e-07, N = 7824) | (0.79, 0.11, P = 0.058, N = 859) |
rs4319434(A)/10:50345140 | FAM170B | (0.4, 0.0037, P = 3.7e-05, N = 7824) | (0.091, -0.011, P = 0.89, N = 859) |
rs6481417(A)/10:60405788 | BICC1 | (0.97, -0.18, P = 5.4e-06, N = 1954) | (0.96, 0.035, P = 0.78, N = 859) |
rs1981138(T)/10:61303642 | intergenic | (0.43, 0.0046, P = 3.3e-07, N = 7824) | (0.8, 0.14, P = 0.022, N = 859) |
rs12356193(A)/10:61413353* | SLC16A9 | (0.84, 0.027, P = 3.7e-63, N = 7824) | (0.92, 0.016, P = 0.86, N = 859) |
rs2242206(T)/10:61414011* | SLC16A9 | (0.26, 0.012, P = 4.7e-16, N = 7824) | (0.09, 0.076, P = 0.36, N = 859) |
rs1171610(T)/10:61477697* | SLC16A9 | (0.62, 0.0081, P = 2.5e-19, N = 7824) | (0.54, 0.0046, P = 0.93, N = 859) |
rs6479648(A)/10:61510559* | LINC00948 | (0.42, -0.0087, P = 8.4e-22, N = 7824) | (0.57, 0.018, P = 0.72, N = 859) |
rs10994097(A)/10:61730651 | intergenic | (0.48, -0.0038, P = 2.4e-05, N = 7824) | (0.28, -0.076, P = 0.15, N = 859) |
rs2394298(A)/10:68462751* | CTNNA3 | (0.59, 0.0047, P = 1.5e-07, N = 7824) | (0.65, 0.048, P = 0.34, N = 859) |
rs1925611(A)/10:68756918 | CTNNA3 | (0.47, -0.0048, P = 2e-07, N = 7824) | (0.66, -0.016, P = 0.75, N = 859) |
rs2762613(T)/10:7225045 | SFMBT2 | (0.61, -0.0037, P = 4e-05, N = 7824) | (0.72, -0.027, P = 0.61, N = 859) |
rs9415053(C)/10:73575910 | CDH23 | (0.47, -0.0042, P = 2.8e-06, N = 7824) | (0.28, 0.059, P = 0.27, N = 859) |
rs11596100(A)/10:78612153 | intergenic | (0.4, 0.0039, P = 2.2e-05, N = 7824) | (0.21, -0.049, P = 0.39, N = 859) |
rs4881523(T)/10:801945 | intergenic | (0.54, 0.0045, P = 6e-07, N = 7824) | (0.82, -0.0069, P = 0.92, N = 859) |
rs478982(A)/10:84585708 | NRG3 | (0.34, 0.004, P = 9.1e-06, N = 7824) | (0.52, -0.017, P = 0.73, N = 859) |
rs11253451(T)/10:852885 | LARP4B | (0.42, 0.004, P = 1.3e-05, N = 7824) | (0.17, 0.076, P = 0.22, N = 859) |
rs1936602(T)/10:92445253 | intergenic | (0.42, 0.0043, P = 2.5e-06, N = 7824) | (0.71, -0.0022, P = 0.97, N = 859) |
rs6583992(T)/10:97086735* | SORBS1 | (0.52, -0.0038, P = 2.5e-05, N = 7824) | (0.34, 0.052, P = 0.3, N = 859) |
rs11601438(A)/11:101955932 | C11orf70 | (0.39, -0.0042, P = 2.9e-06, N = 7824) | (0.48, -9e-04, P = 0.98, N = 859) |
rs470747(A)/11:102661595 | MMP1 | (0.64, 0.0038, P = 2.8e-05, N = 7824) | (0.65, -0.023, P = 0.65, N = 859) |
rs4075679(T)/11:11318921 | GALNT18 | (0.56, -0.0037, P = 3.7e-05, N = 7824) | (0.67, -0.042, P = 0.42, N = 859) |
rs10789970(T)/11:113773946* | HTR3B | (0.41, -0.0041, P = 6.6e-06, N = 7824) | (0.64, -0.054, P = 0.3, N = 859) |
rs2702023(C)/11:125465020 | STT3A | (0.4, 0.0045, P = 8.6e-07, N = 7824) | (0.7, 0.046, P = 0.38, N = 859) |
rs4937076(A)/11:125826702* | CDON | (0.53, 0.0039, P = 1.6e-05, N = 7824) | (0.37, 0.023, P = 0.65, N = 859) |
rs11022568(A)/11:12966883 | TEAD1 | (0.36, 0.0039, P = 1.5e-05, N = 7824) | (0.5, -0.065, P = 0.19, N = 859) |
rs923075(T)/11:130311545 | intergenic | (0.61, -0.0041, P = 4.8e-06, N = 7824) | (0.34, -0.06, P = 0.26, N = 859) |
rs11223211(A)/11:132663965* | OPCML | (0.47, 0.0047, P = 1.7e-07, N = 7824) | (0.42, 0.0076, P = 0.87, N = 859) |
rs2793471(T)/11:29387798 | RP11-460B17.3 | (0.57, 0.0041, P = 7.2e-06, N = 7824) | (0.82, 0.064, P = 0.31, N = 859) |
rs2295756(T)/11:35241229 | CD44 | (0.65, -0.0038, P = 3.3e-05, N = 7824) | (0.76, 0.0011, P = 0.98, N = 859) |
rs11033087(T)/11:35374044 | SLC1A2 | (0.39, 0.0038, P = 3.4e-05, N = 7824) | (0.36, -0.031, P = 0.54, N = 859) |
rs10501155(A)/11:36445197 | PRR5L | (0.64, -0.0038, P = 4e-05, N = 7824) | (0.57, -0.058, P = 0.25, N = 859) |
rs12283045(A)/11:39593279 | intergenic | (0.023, -0.03, P = 3.6e-05, N = 7824) | (0.026, -0.1, P = 0.52, N = 859) |
rs4313557(A)/11:39601993 | intergenic | (0.98, 0.03, P = 3.3e-05, N = 7824) | (0.88, -0.072, P = 0.33, N = 859) |
rs2595993(A)/11:4964627* | MMP26 | (0.5, -0.0042, P = 2.9e-06, N = 7824) | (0.67, 0.053, P = 0.29, N = 859) |
rs7940551(T)/11:60592783 | RP11-804A23.1 | (0.44, -0.004, P = 8.3e-06, N = 7824) | (0.57, 0.055, P = 0.26, N = 859) |
rs561895(T)/11:64602757 | CDC42BPG | (0.66, -0.0042, P = 6.6e-06, N = 7824) | (0.39, -0.024, P = 0.63, N = 859) |
rs2009453(T)/11:65399528 | PCNXL3 | (0.56, 0.0038, P = 2.5e-05, N = 7824) | (0.4, -0.012, P = 0.81, N = 859) |
rs2170082(A)/11:65454795* | intergenic | (0.52, -0.0047, P = 2.2e-07, N = 7824) | (0.39, -0.013, P = 0.79, N = 859) |
rs4078258(T)/11:7542298* | PPFIBP2 | (0.63, -0.0041, P = 6.1e-06, N = 7824) | (0.9, 0.076, P = 0.34, N = 859) |
rs575929(T)/11:78888265* | TENM4 | (0.63, 0.0039, P = 1.3e-05, N = 7824) | (0.86, 0.014, P = 0.84, N = 859) |
rs2508305(T)/11:86410402 | CTD-2005H7.1 | (0.89, -0.0079, P = 4.1e-06, N = 7824) | (0.85, -0.031, P = 0.65, N = 859) |
rs12417365(T)/11:93903770 | PANX1 | (0.52, -0.004, P = 7.8e-06, N = 7824) | (0.52, -0.0053, P = 0.91, N = 859) |
rs1541301(T)/11:93926656 | RP11-680H20.1 | (0.41, -0.0037, P = 3.6e-05, N = 7824) | (0.51, 0.032, P = 0.51, N = 859) |
rs10840262(C)/11:9589840 | intergenic | (0.52, 0.0041, P = 3.4e-06, N = 7824) | (0.74, -0.12, P = 0.035, N = 859) |
rs7929841(T)/11:96195715* | JRKL-AS1 | (0.65, 0.0043, P = 2.1e-06, N = 7824) | (0.47, 0.03, P = 0.54, N = 859) |
rs996408(T)/12:100051003 | ANKS1B | (0.52, -0.0046, P = 3.7e-07, N = 7824) | (0.75, 0.088, P = 0.12, N = 859) |
rs844016(T)/12:101592689* | SLC5A8 | (0.58, 0.0047, P = 2.2e-07, N = 7824) | (0.44, -0.031, P = 0.53, N = 859) |
rs7956795(T)/12:107536076 | intergenic | (0.63, 0.0037, P = 3.2e-05, N = 7824) | (0.51, 0.013, P = 0.79, N = 859) |
rs11066777(T)/12:109478352 | USP30 | (0.14, -0.007, P = 1.4e-05, N = 7824) | (0.034, -0.052, P = 0.7, N = 859) |
rs2062713(T)/12:115176552 | RP4-601P9.2 | (0.47, -0.0038, P = 2.7e-05, N = 7824) | (0.24, 0.0066, P = 0.91, N = 859) |
rs1391715(T)/12:115821235 | intergenic | (0.59, -0.0037, P = 3.7e-05, N = 7824) | (0.66, -0.066, P = 0.19, N = 859) |
rs514826(A)/12:118809303* | TAOK3 | (0.34, 0.0038, P = 3.5e-05, N = 7824) | (0.27, 0.017, P = 0.75, N = 859) |
rs10734956(A)/12:128653360 | intergenic | (0.034, -0.018, P = 2e-05, N = 7824) | (0.11, 0.11, P = 0.14, N = 859) |
rs12370755(A)/12:16664330 | RP11-424M22.1 | (0.49, -0.0039, P = 1.5e-05, N = 7824) | (0.8, -0.027, P = 0.65, N = 859) |
rs4764292(T)/12:16937829 | RP11-239A17.1 | (0.58, 0.0044, P = 9.8e-07, N = 7824) | (0.48, -0.077, P = 0.11, N = 859) |
rs4931109(T)/12:29005992* | intergenic | (0.097, -0.0072, P = 3.5e-05, N = 7824) | (0.16, 0.073, P = 0.28, N = 859) |
rs12825454(T)/12:29296989* | RP11-946L16.1 | (0.95, 0.02, P = 1.2e-05, N = 7824) | (0.99, 0.024, P = 0.91, N = 859) |
rs11052839(C)/12:33836056 | intergenic | (0.4, 0.0037, P = 3.9e-05, N = 7824) | (0.61, -1e-04, P = 1, N = 859) |
rs1449844(C)/12:39521446 | intergenic | (0.4, -0.0048, P = 9.2e-08, N = 7824) | (0.51, -0.03, P = 0.53, N = 859) |
rs11183620(A)/12:47212370* | SLC38A4 | (0.47, 0.005, P = 3e-08, N = 7824) | (0.8, -0.00048, P = 0.99, N = 859) |
rs3825192(A)/12:54778823 | ZNF385A | (0.56, -0.0038, P = 2.8e-05, N = 7824) | (0.22, 0.0063, P = 0.91, N = 859) |
rs1716342(A)/12:54998214 | GLYCAM1 | (0.34, -0.0092, P = 2.6e-05, N = 7824) | (0.42, -0.075, P = 0.12, N = 859) |
rs10876579(T)/12:55051647 | intergenic | (0.51, 0.0037, P = 3.9e-05, N = 7824) | (0.32, 0.026, P = 0.62, N = 859) |
rs10784558(T)/12:67003883 | GRIP1 | (0.48, -0.0048, P = 1.1e-07, N = 7824) | (0.72, 0.11, P = 0.04, N = 859) |
rs6581712(A)/12:67066139 | GRIP1 | (0.61, 0.0043, P = 2.5e-06, N = 7824) | (0.89, -0.13, P = 0.09, N = 859) |
rs1144963(T)/12:69335625 | CPM | (0.56, -0.0046, P = 2.5e-07, N = 7824) | (0.86, -0.053, P = 0.44, N = 859) |
rs10784751(A)/12:69447462 | intergenic | (0.51, 0.004, P = 9.3e-06, N = 7824) | (0.62, -0.0065, P = 0.9, N = 859) |
rs10772367(C)/12:7278538 | RBP5 | (0.6, -0.004, P = 8.6e-06, N = 7824) | (0.68, 0.021, P = 0.68, N = 859) |
rs6539588(T)/12:82269057* | intergenic | (0.39, 0.0043, P = 1.9e-06, N = 7824) | (0.23, 0.011, P = 0.85, N = 859) |
rs7961308(T)/12:82404500 | intergenic | (0.65, 0.0039, P = 1.4e-05, N = 7824) | (0.73, 0.028, P = 0.6, N = 859) |
rs9651972(A)/12:83861845* | intergenic | (0.54, -0.0037, P = 4e-05, N = 7824) | (0.53, 0.047, P = 0.33, N = 859) |
rs36110904(G)/13:101621161 | NALCN-AS1 | (0.12, -0.55, P = 8e-06, N = 1954) | (0.075, -0.024, P = 0.8, N = 859) |
rs9557806(A)/13:102762742 | FGF14 | (0.55, -0.0042, P = 2.4e-06, N = 7824) | (0.16, 0.018, P = 0.78, N = 859) |
rs7981434(T)/13:105494343 | intergenic | (0.13, -0.0072, P = 1.4e-05, N = 7824) | (0.14, -0.07, P = 0.32, N = 859) |
rs1771142(T)/13:108581825 | intergenic | (0.94, 0.01, P = 4.2e-05, N = 7824) | (0.83, 0.059, P = 0.36, N = 859) |
rs1223979(A)/13:108775403 | intergenic | (0.34, 0.0039, P = 2.4e-05, N = 7824) | (0.26, -0.086, P = 0.11, N = 859) |
rs7334548(A)/13:20131135 | MRPS31P2 | (0.1, -0.007, P = 3.5e-05, N = 7824) | (0.18, 0.025, P = 0.68, N = 859) |
rs7331418(T)/13:20880993* | intergenic | (0.49, -0.0037, P = 3.3e-05, N = 7824) | (0.24, 0.046, P = 0.42, N = 859) |
rs9578362(T)/13:21882381 | LINC00422 | (0.42, 0.0037, P = 4.2e-05, N = 7824) | (0.35, -0.0048, P = 0.92, N = 859) |
rs9552478(T)/13:22306355* | intergenic | (0.41, 0.0037, P = 4.9e-05, N = 7824) | (0.38, 0.13, P = 0.011, N = 859) |
rs2133813(T)/13:27199422 | WASF3 | (0.44, 0.0041, P = 9.5e-06, N = 7824) | (0.75, -0.056, P = 0.31, N = 859) |
rs4769648(T)/13:29518969 | intergenic | (0.54, -0.0041, P = 2e-05, N = 7824) | (0.86, 0.096, P = 0.17, N = 859) |
rs9508555(C)/13:30372036 | UBL3 | (0.6, 0.004, P = 1.2e-05, N = 7824) | (0.34, 0.055, P = 0.29, N = 859) |
rs7325107(A)/13:31513425 | TEX26 | (0.65, -0.0037, P = 4.6e-05, N = 7824) | (0.55, 0.088, P = 0.071, N = 859) |
rs10507402(C)/13:31859378 | B3GALTL | (0.061, 0.0099, P = 4.3e-05, N = 7824) | (0.013, -0.14, P = 0.51, N = 859) |
rs1869800(T)/13:32180136 | intergenic | (0.51, -0.004, P = 1e-05, N = 7824) | (0.25, 0.0026, P = 0.96, N = 859) |
rs7991989(T)/13:37947132 | intergenic | (0.61, 0.0041, P = 4.3e-06, N = 7824) | (0.58, -0.12, P = 0.018, N = 859) |
rs11618539(T)/13:39470388 | intergenic | (0.34, -0.0038, P = 2.9e-05, N = 7824) | (0.21, -0.1, P = 0.095, N = 859) |
rs238340(A)/13:42821270 | DGKH | (0.57, -0.0042, P = 4.8e-06, N = 7824) | (0.77, 0.021, P = 0.72, N = 859) |
rs2260128(A)/13:51301137 | DLEU7 | (0.5, 0.0039, P = 2.3e-05, N = 7824) | (0.14, 0.061, P = 0.39, N = 859) |
rs1326095(T)/13:59921558 | intergenic | (0.6, -0.0038, P = 2.8e-05, N = 7824) | (0.57, -0.0073, P = 0.89, N = 859) |
rs3127274(T)/13:61757866 | intergenic | (0.42, 0.0043, P = 2.1e-06, N = 7824) | (0.75, -0.045, P = 0.42, N = 859) |
rs3128061(T)/13:62843923 | intergenic | (0.4, -0.0049, P = 5.7e-08, N = 7824) | (0.65, 0.05, P = 0.32, N = 859) |
rs1537385(T)/13:73655521 | KLF5 | (0.96, 0.032, P = 1.2e-06, N = 7824) | (0.82, -0.06, P = 0.34, N = 859) |
rs9318214(T)/13:74344393 | KLF12 | (0.6, -0.0039, P = 1.8e-05, N = 7824) | (0.57, -0.016, P = 0.73, N = 859) |
rs9530362(T)/13:75230797 | intergenic | (0.57, -0.0044, P = 1.2e-06, N = 7824) | (0.49, 0.06, P = 0.22, N = 859) |
rs9530483(C)/13:76460888 | C13orf45 | (0.56, -0.0039, P = 1.5e-05, N = 7824) | (0.2, 0.1, P = 0.083, N = 859) |
rs12427799(T)/13:76469472 | intergenic | (0.33, -0.0038, P = 3.4e-05, N = 7824) | (0.34, 0.043, P = 0.4, N = 859) |
rs17065231(T)/13:76478084 | intergenic | (0.094, -0.0092, P = 7.2e-08, N = 7824) | (0.19, -0.055, P = 0.37, N = 859) |
rs2000364(T)/13:83157116 | intergenic | (0.63, 0.0041, P = 5.7e-06, N = 7824) | (0.54, -0.029, P = 0.54, N = 859) |
rs2390038(A)/13:98960113 | FARP1 | (0.52, 0.004, P = 1.9e-05, N = 7824) | (0.66, 0.0044, P = 0.93, N = 859) |
rs2297732(A)/14:20781361 | CCNB1IP1 | (0.39, -0.0039, P = 1.9e-05, N = 7824) | (0.59, 0.067, P = 0.17, N = 859) |
rs1760903(A)/14:20852817* | TEP1 | (0.44, -0.0045, P = 1e-06, N = 7824) | (0.76, 0.078, P = 0.17, N = 859) |
rs2204941(T)/14:22364012 | TRAV8-4 | (0.37, -0.0039, P = 1.6e-05, N = 7824) | (0.56, 0.028, P = 0.56, N = 859) |
rs979027(A)/14:22488509 | intergenic | (0.36, -0.0039, P = 1.7e-05, N = 7824) | (0.65, 0.059, P = 0.24, N = 859) |
rs12891757(C)/14:24758467 | DHRS1 | (0.5, -0.13, P = 2.1e-06, N = 1954) | (0.25, -0.12, P = 0.035, N = 859) |
rs11159415(A)/14:26098033 | intergenic | (0.39, -0.0039, P = 1.9e-05, N = 7824) | (0.3, 0.08, P = 0.14, N = 859) |
rs10136635(A)/14:26567277* | RP11-314P15.2 | (0.55, 0.0041, P = 6e-06, N = 7824) | (0.57, -0.033, P = 0.51, N = 859) |
rs2807822(T)/14:28484921 | intergenic | (0.45, -0.0039, P = 1.7e-05, N = 7824) | (0.27, 0.0084, P = 0.88, N = 859) |
rs11844637(T)/14:30023621 | intergenic | (0.53, -0.0036, P = 5e-05, N = 7824) | (0.64, 0.013, P = 0.79, N = 859) |
rs4981891(A)/14:32193959 | NUBPL | (0.37, 0.0037, P = 3.5e-05, N = 7824) | (0.68, 0.093, P = 0.07, N = 859) |
rs10147032(A)/14:34395888 | EGLN3 | (0.52, 0.0038, P = 2.1e-05, N = 7824) | (0.44, -0.053, P = 0.28, N = 859) |
rs17557823(T)/14:38628997 | CTD-2058B24.2 | (0.64, -0.0037, P = 3.9e-05, N = 7824) | (0.89, -0.0056, P = 0.94, N = 859) |
rs2022681(A)/14:48147028 | MDGA2 | (0.52, -0.0039, P = 1.9e-05, N = 7824) | (0.45, 0.064, P = 0.19, N = 859) |
rs4901008(A)/14:50737669* | L2HGDH | (0.55, -0.0039, P = 1.6e-05, N = 7824) | (0.77, -0.017, P = 0.77, N = 859) |
rs10130689(T)/14:51391471 | PYGL | (0.16, -0.0075, P = 5e-06, N = 7824) | (0.064, -0.092, P = 0.34, N = 859) |
rs10131515(A)/14:59315152 | RP11-112J1.2 | (0.86, 0.0072, P = 3.1e-05, N = 7824) | (0.82, 0.026, P = 0.68, N = 859) |
rs1256061(T)/14:64703593* | ESR2 | (0.47, -0.0038, P = 3.1e-05, N = 7824) | (0.33, 0.062, P = 0.23, N = 859) |
rs11620955(A)/14:65491255* | FNTB | (0.48, -0.0051, P = 1.6e-08, N = 7824) | (0.29, -0.016, P = 0.76, N = 859) |
rs2526920(A)/14:73101727 | DPF3 | (0.44, 0.0039, P = 1.7e-05, N = 7824) | (0.37, -0.05, P = 0.32, N = 859) |
rs740974(A)/14:73188074 | DPF3 | (0.64, -0.0038, P = 3.3e-05, N = 7824) | (0.86, -0.0062, P = 0.93, N = 859) |
rs6637(T)/14:77801431 | TMED8 | (0.62, -0.0038, P = 3.8e-05, N = 7824) | (0.86, -0.057, P = 0.42, N = 859) |
rs2210185(T)/14:84438761* | intergenic | (0.53, -0.0039, P = 1.8e-05, N = 7824) | (0.54, -0.041, P = 0.39, N = 859) |
rs4643242(A)/14:84831048 | intergenic | (0.47, -0.0038, P = 2.7e-05, N = 7824) | (0.61, 0.048, P = 0.3, N = 859) |
rs2474028(T)/14:92403660* | FBLN5 | (0.36, 0.0037, P = 4.5e-05, N = 7824) | (0.27, -0.042, P = 0.44, N = 859) |
rs11620973(A)/14:96018052 | intergenic | (0.63, -0.0051, P = 2.3e-08, N = 7824) | (0.61, -0.0076, P = 0.88, N = 859) |
rs11630130(A)/15:26000551* | ATP10A | (0.14, 0.0092, P = 5.8e-06, N = 7824) | (0.26, 0.043, P = 0.44, N = 859) |
rs11070560(A)/15:47256943* | intergenic | (0.34, -0.0039, P = 1.6e-05, N = 7824) | (0.29, -0.032, P = 0.53, N = 859) |
rs809760(G)/15:49011421* | CEP152 | (0.7, 0.12, P = 2.3e-06, N = 1954) | (0.69, -0.048, P = 0.34, N = 859) |
rs496150(A)/15:53410502 | RP11-209E8.1 | (0.63, -0.004, P = 9.9e-06, N = 7824) | (0.29, 0.039, P = 0.46, N = 859) |
rs1189402(A)/15:53728154* | intergenic | (0.62, 0.0037, P = 4.4e-05, N = 7824) | (0.77, 0.03, P = 0.61, N = 859) |
rs7162803(A)/15:60160944 | RP11-568G20.2 | (0.5, 0.0048, P = 8.5e-08, N = 7824) | (0.4, 0.062, P = 0.21, N = 859) |
rs12595347(T)/15:60284511* | intergenic | (0.54, -0.0037, P = 3.8e-05, N = 7824) | (0.59, -0.092, P = 0.058, N = 859) |
rs11635276(C)/15:68757515* | intergenic | (0.52, -0.0041, P = 5.4e-06, N = 7824) | (0.32, -0.088, P = 0.091, N = 859) |
rs2114713(T)/15:80528373 | RP11-2E17.1 | (0.58, -0.005, P = 2.7e-08, N = 7824) | (0.43, -0.063, P = 0.21, N = 859) |
rs7175825(C)/15:80795419 | ARNT2 | (0.38, -0.0037, P = 4.2e-05, N = 7824) | (0.38, -0.026, P = 0.61, N = 859) |
rs11630705(C)/15:84614800 | ADAMTSL3 | (0.41, 0.0045, P = 5.1e-07, N = 7824) | (0.15, -0.0011, P = 0.99, N = 859) |
rs12443054(T)/15:89711479 | ABHD2 | (0.65, 0.0037, P = 4e-05, N = 7824) | (0.61, -0.12, P = 0.01, N = 859) |
rs7174567(A)/15:94669167* | intergenic | (0.56, 0.0037, P = 4e-05, N = 7824) | (0.58, 0.022, P = 0.65, N = 859) |
rs2130882(T)/15:98513845 | ARRDC4 | (0.49, 0.0044, P = 1.1e-06, N = 7824) | (0.89, 0.0049, P = 0.95, N = 859) |
rs3743582(A)/16:11650325 | LITAF | (0.48, -0.0037, P = 3.4e-05, N = 7824) | (0.36, 0.016, P = 0.75, N = 859) |
rs4633738(A)/16:11742027 | intergenic | (0.48, 0.0041, P = 5.4e-06, N = 7824) | (0.29, -0.047, P = 0.38, N = 859) |
rs7500049(A)/16:23006790 | intergenic | (0.39, 0.004, P = 1e-05, N = 7824) | (0.85, 0.079, P = 0.25, N = 859) |
rs11863492(A)/16:23044175 | intergenic | (0.37, 0.0037, P = 4.2e-05, N = 7824) | (0.22, -0.04, P = 0.49, N = 859) |
rs2014139(T)/16:25433163 | CTA-249B10.1 | (0.47, -0.0037, P = 3.9e-05, N = 7824) | (0.29, -0.049, P = 0.36, N = 859) |
rs205120(A)/16:25668663 | intergenic | (0.44, 0.0039, P = 1.2e-05, N = 7824) | (0.28, -0.054, P = 0.31, N = 859) |
rs10871453(C)/16:30536918 | ZNF768 | (0.61, -0.0038, P = 2.8e-05, N = 7824) | (0.53, -0.066, P = 0.17, N = 859) |
rs2192858(T)/16:51992615* | intergenic | (0.64, 0.004, P = 1.2e-05, N = 7824) | (0.23, -0.061, P = 0.29, N = 859) |
rs2432560(T)/16:58533709 | NDRG4 | (0.63, 0.0042, P = 6.1e-06, N = 7824) | (0.64, 0.0099, P = 0.85, N = 859) |
rs73549090(T)/16:59454967 | intergenic | (0.023, -0.83, P = 3.7e-06, N = 1954) | (0.13, -0.011, P = 0.87, N = 859) |
rs12926141(T)/16:62411321 | intergenic | (0.37, 0.0039, P = 2e-05, N = 7824) | (0.3, -0.056, P = 0.29, N = 859) |
rs1544811(A)/16:62656937 | intergenic | (0.46, 0.004, P = 9e-06, N = 7824) | (0.48, -0.0028, P = 0.95, N = 859) |
rs2274239(A)/16:68725783 | CDH3 | (0.61, 0.0039, P = 1.3e-05, N = 7824) | (0.67, 0.03, P = 0.56, N = 859) |
rs4888504(T)/16:76465969 | CNTNAP4 | (0.42, 0.0046, P = 2.7e-07, N = 7824) | (0.58, -0.11, P = 0.023, N = 859) |
rs12934986(A)/16:81553070 | CMIP | (0.14, -0.0072, P = 1.2e-05, N = 7824) | (0.14, 0.065, P = 0.35, N = 859) |
rs12931303(C)/16:83613314 | CDH13 | (0.1, -0.012, P = 1.3e-05, N = 7824) | (0.061, -0.19, P = 0.068, N = 859) |
rs13330994(C)/16:84414741 | ATP2C2 | (0.57, 1.2, P = 4.8e-06, N = 1954) | (0.57, 0.0012, P = 0.98, N = 859) |
rs2132850(A)/16:84975550* | RP11-254F19.3 | (0.5, 0.0038, P = 2.3e-05, N = 7824) | (0.34, 0.029, P = 0.57, N = 859) |
rs7203110(A)/16:8523542 | intergenic | (0.44, -0.0038, P = 2.4e-05, N = 7824) | (0.4, 0.034, P = 0.49, N = 859) |
rs556436666(CT)/17:1965296 | SMG6 | (0.08, -1.2, P = 8.8e-06, N = 1954) | (0.027, 0.25, P = 0.091, N = 859) |
rs2066713(A)/17:28551665 | SLC6A4 | (0.4, 0.0038, P = 2.4e-05, N = 7824) | (0.25, -0.093, P = 0.095, N = 859) |
rs4305127(T)/17:31817874 | ASIC2 | (0.4, -0.005, P = 5.7e-07, N = 7824) | (0.86, 0.0037, P = 0.96, N = 859) |
rs2158298(T)/17:39072234* | intergenic | (0.59, 0.0039, P = 1.4e-05, N = 7824) | (0.34, 0.0045, P = 0.93, N = 859) |
rs3736438(T)/17:45486651 | EFCAB13 | (0.39, -0.0057, P = 3.2e-10, N = 7824) | (0.29, 0.026, P = 0.63, N = 859) |
rs12709393(T)/17:55292115 | intergenic | (0.63, 0.0053, P = 6.4e-09, N = 7824) | (0.28, 0.00086, P = 0.99, N = 859) |
rs989681(T)/17:67542493 | MAP2K6 | (0.52, 0.0041, P = 7.4e-06, N = 7824) | (0.41, -0.016, P = 0.74, N = 859) |
rs4793395(T)/17:68509948 | intergenic | (0.47, 0.0041, P = 6.6e-06, N = 7824) | (0.3, -0.039, P = 0.46, N = 859) |
rs12938026(T)/17:68582006 | intergenic | (0.61, 0.0046, P = 2.8e-07, N = 7824) | (0.84, -0.064, P = 0.32, N = 859) |
rs8070753(A)/17:9264728* | STX8 | (0.37, -0.0038, P = 2.8e-05, N = 7824) | (0.59, -0.094, P = 0.063, N = 859) |
rs12607576(T)/18:13246168 | LDLRAD4 | (0.54, -0.004, P = 6.7e-06, N = 7824) | (0.88, -0.036, P = 0.63, N = 859) |
rs9947578(A)/18:14773230 | ANKRD30B | (0.56, 0.0043, P = 3.9e-06, N = 7824) | (0.75, 0.037, P = 0.52, N = 859) |
rs175776(C)/18:28624148 | DSC3 | (0.58, 0.0037, P = 4e-05, N = 7824) | (0.68, -0.094, P = 0.071, N = 859) |
rs1786077(A)/18:34867844 | CELF4 | (0.55, 0.0038, P = 2.2e-05, N = 7824) | (0.32, 0.0016, P = 0.97, N = 859) |
rs1358331(T)/18:41180458 | intergenic | (0.51, -0.0039, P = 1.7e-05, N = 7824) | (0.67, 0.044, P = 0.38, N = 859) |
rs2362839(A)/18:42991252* | SLC14A2 | (0.6, -0.0041, P = 5.1e-06, N = 7824) | (0.55, 0.042, P = 0.37, N = 859) |
rs9960949(A)/18:46209558 | CTIF | (0.48, -0.0042, P = 8.8e-06, N = 7824) | (0.72, 0.039, P = 0.47, N = 859) |
rs515897(A)/18:55209506 | intergenic | (0.62, -0.0037, P = 4.8e-05, N = 7824) | (0.28, -0.0084, P = 0.88, N = 859) |
rs4940563(A)/18:60277715 | intergenic | (0.53, -0.005, P = 5.7e-07, N = 7824) | (0.74, -0.037, P = 0.5, N = 859) |
rs4436868(T)/18:61958609* | RP11-146N18.1 | (0.5, 0.0045, P = 4.3e-07, N = 7824) | (0.37, -0.0061, P = 0.91, N = 859) |
rs618153(A)/18:62753986 | intergenic | (0.35, 0.0039, P = 2e-05, N = 7824) | (0.39, -0.061, P = 0.22, N = 859) |
rs536279(A)/18:65497981 | RP11-638L3.2 | (0.39, -0.004, P = 1.3e-05, N = 7824) | (0.16, -0.039, P = 0.55, N = 859) |
rs8086262(A)/18:69227590 | RP11-510D19.1 | (0.66, -0.004, P = 1.5e-05, N = 7824) | (0.61, -0.041, P = 0.42, N = 859) |
rs492522(T)/18:6986638* | LAMA1 | (0.55, -0.0037, P = 3.6e-05, N = 7824) | (0.46, 0.096, P = 0.041, N = 859) |
rs12232577(A)/18:69966132 | intergenic | (0.91, -0.0074, P = 3.8e-05, N = 7824) | (0.92, 0.018, P = 0.83, N = 859) |
rs9952198(T)/18:71878838 | RP11-669I1.1 | (0.53, -0.0039, P = 2e-05, N = 7824) | (0.45, -0.048, P = 0.34, N = 859) |
rs1866732(A)/18:72933187 | TSHZ1 | (0.66, 0.0037, P = 4.7e-05, N = 7824) | (0.42, 0.0042, P = 0.93, N = 859) |
rs6506736(A)/18:76940235 | ATP9B | (0.52, 0.0042, P = 2.6e-06, N = 7824) | (0.2, 0.038, P = 0.52, N = 859) |
rs11085752(A)/19:11065409* | intergenic | (0.58, -0.004, P = 9.5e-06, N = 7824) | (0.62, 0.016, P = 0.75, N = 859) |
rs11085914(T)/19:14978191* | AC005255.6 | (0.55, -0.0042, P = 2.9e-06, N = 7824) | (0.83, -0.11, P = 0.073, N = 859) |
rs8099879(A)/19:17230287 | MYO9B | (0.38, 0.005, P = 5.7e-07, N = 7824) | (0.24, -0.007, P = 0.9, N = 859) |
rs287104(A)/19:34290995* | KCTD15 | (0.65, 0.0038, P = 4.1e-05, N = 7824) | (0.79, 0.029, P = 0.61, N = 859) |
rs2451996(A)/19:35544963 | HPN | (0.58, 0.0043, P = 1.7e-06, N = 7824) | (0.27, 0.072, P = 0.19, N = 859) |
rs1820690(A)/19:48490006 | BSPH1 | (0.61, -0.15, P = 2.7e-06, N = 1954) | (0.77, 0.14, P = 0.013, N = 859) |
rs1513628(A)/2:101338644* | AC092168.4 | (0.37, -0.004, P = 1.3e-05, N = 7824) | (0.11, 0.07, P = 0.38, N = 859) |
rs6542041(A)/2:112911923 | FBLN7 | (0.49, -0.0037, P = 4.6e-05, N = 7824) | (0.52, 0.059, P = 0.22, N = 859) |
rs17355679(T)/2:115964965 | DPP10 | (0.36, -0.004, P = 1e-05, N = 7824) | (0.59, -0.034, P = 0.49, N = 859) |
rs2577264(A)/2:11936798* | LPIN1 | (0.38, 0.0043, P = 2.1e-06, N = 7824) | (0.11, 0.02, P = 0.8, N = 859) |
rs2043885(T)/2:124856339 | CNTNAP5 | (0.42, 0.0038, P = 2.9e-05, N = 7824) | (0.26, 0.022, P = 0.68, N = 859) |
rs11899152(A)/2:125483741 | CNTNAP5 | (0.54, -0.0037, P = 4.7e-05, N = 7824) | (0.45, -0.049, P = 0.3, N = 859) |
rs7587616(A)/2:134708496* | intergenic | (0.47, -0.0037, P = 4.7e-05, N = 7824) | (0.37, 0.067, P = 0.17, N = 859) |
rs1427617(T)/2:137487339 | intergenic | (0.37, 0.0038, P = 2.9e-05, N = 7824) | (0.39, -0.024, P = 0.64, N = 859) |
rs6721330(A)/2:149858906 | KIF5C | (0.55, -0.0041, P = 4.9e-06, N = 7824) | (0.19, 0.018, P = 0.78, N = 859) |
rs2881873(T)/2:154524124 | intergenic | (0.46, -0.0037, P = 4e-05, N = 7824) | (0.57, 0.011, P = 0.82, N = 859) |
rs1446555(A)/2:158109405 | GALNT5 | (0.9, 0.008, P = 3.2e-06, N = 7824) | (0.79, -0.00072, P = 0.99, N = 859) |
rs1424937(A)/2:169566184 | CERS6 | (0.46, 0.0042, P = 2.3e-06, N = 7824) | (0.16, 0.019, P = 0.77, N = 859) |
rs2544371(A)/2:170227070 | intergenic | (0.56, 0.004, P = 8.7e-06, N = 7824) | (0.58, -0.02, P = 0.69, N = 859) |
rs2969327(T)/2:177422617* | intergenic | (0.43, -0.0039, P = 1.8e-05, N = 7824) | (0.52, -0.033, P = 0.51, N = 859) |
rs262273(C)/2:180911563 | intergenic | (0.39, -0.0042, P = 2.8e-06, N = 7824) | (0.53, -0.051, P = 0.29, N = 859) |
rs288332(A)/2:183625350* | DNAJC10 | (0.63, -0.0043, P = 1.8e-06, N = 7824) | (0.81, -0.00021, P = 1, N = 859) |
rs1981913(T)/2:205169149 | DSTNP5 | (0.62, 0.0039, P = 2.1e-05, N = 7824) | (0.53, 0.035, P = 0.47, N = 859) |
rs6435389(T)/2:208696325 | PLEKHM3 | (0.34, 0.0039, P = 2.1e-05, N = 7824) | (0.22, 0.09, P = 0.14, N = 859) |
rs7570090(T)/2:210880893* | RPE | (0.46, -0.0038, P = 3e-05, N = 7824) | (0.38, 0.012, P = 0.8, N = 859) |
rs12994785(A)/2:212857425* | ERBB4 | (0.55, 0.0039, P = 1.8e-05, N = 7824) | (0.28, -0.044, P = 0.42, N = 859) |
rs1250070(A)/2:216557733 | LINC00607 | (0.39, -0.0042, P = 8.6e-06, N = 7824) | (0.28, 0.019, P = 0.72, N = 859) |
rs2279014(T)/2:219261176* | SLC11A1 | (0.37, -0.005, P = 4.9e-08, N = 7824) | (0.4, -0.12, P = 0.016, N = 859) |
rs526897(A)/2:219433597 | RQCD1 | (0.61, 0.0038, P = 3.1e-05, N = 7824) | (0.75, -0.05, P = 0.36, N = 859) |
rs4674438(T)/2:220643119 | intergenic | (0.36, 0.0046, P = 2.9e-07, N = 7824) | (0.6, -0.0078, P = 0.87, N = 859) |
rs2710503(C)/2:222374699 | EPHA4 | (0.44, -0.0044, P = 1.7e-06, N = 7824) | (0.13, -0.006, P = 0.94, N = 859) |
rs9784110(T)/2:230215502 | intergenic | (0.61, -0.0042, P = 4e-06, N = 7824) | (0.57, -0.11, P = 0.03, N = 859) |
rs977041(A)/2:230350848 | DNER | (0.44, 0.0044, P = 1.3e-06, N = 7824) | (0.47, -0.018, P = 0.71, N = 859) |
rs2292871(A)/2:238499690 | RAB17 | (0.58, 0.0045, P = 7.7e-07, N = 7824) | (0.22, 0.07, P = 0.23, N = 859) |
rs12987376(T)/2:242917306 | AC093642.3 | (0.45, 0.0037, P = 3.6e-05, N = 7824) | (0.2, -0.047, P = 0.43, N = 859) |
rs4665406(T)/2:28445438 | BRE | (0.37, -0.0043, P = 1.9e-06, N = 7824) | (0.25, 0.027, P = 0.63, N = 859) |
rs7592700(A)/2:3480563* | TRAPPC12 | (0.47, -0.0037, P = 4.3e-05, N = 7824) | (0.86, 0.15, P = 0.026, N = 859) |
rs8179836(C)/2:42903239 | MTA3 | (0.63, 0.0048, P = 1.5e-07, N = 7824) | (0.69, 0.014, P = 0.79, N = 859) |
rs940052(A)/2:45981142 | PRKCE | (0.44, -0.0038, P = 2.2e-05, N = 7824) | (0.52, -0.011, P = 0.82, N = 859) |
rs1374749(A)/2:46596433* | EPAS1 | (0.44, 0.0037, P = 4.4e-05, N = 7824) | (0.5, 0.053, P = 0.27, N = 859) |
rs12473182(C)/2:49427446 | intergenic | (0.4, 0.0038, P = 2.4e-05, N = 7824) | (0.45, 0.024, P = 0.61, N = 859) |
rs735315(T)/2:51331157 | AC007682.1 | (0.49, 0.0054, P = 1.9e-09, N = 7824) | (0.69, 0.0034, P = 0.95, N = 859) |
rs7564248(A)/2:51379098 | AC007682.1 | (0.6, 0.0045, P = 7.4e-07, N = 7824) | (0.56, 0.11, P = 0.024, N = 859) |
rs7604464(A)/2:54389318 | ACYP2 | (0.97, 0.015, P = 5.9e-06, N = 7824) | (0.67, 0.0079, P = 0.88, N = 859) |
rs4669392(A)/2:5620952* | intergenic | (0.43, -0.004, P = 9.3e-06, N = 7824) | (0.34, 0.011, P = 0.82, N = 859) |
rs4672450(T)/2:61944571 | intergenic | (0.48, 0.0044, P = 1.4e-06, N = 7824) | (0.2, 0.0017, P = 0.98, N = 859) |
rs549386(T)/2:70667125 | intergenic | (0.61, -0.0043, P = 1.6e-06, N = 7824) | (0.8, 0.019, P = 0.76, N = 859) |
rs1345836(T)/2:8200042 | LINC00299 | (0.45, 0.0038, P = 2.9e-05, N = 7824) | (0.64, 0.0087, P = 0.86, N = 859) |
rs3097281(A)/2:8508404 | LINC00299 | (0.58, 0.0038, P = 2.3e-05, N = 7824) | (0.56, 0.00028, P = 1, N = 859) |
rs6709816(A)/2:85343124* | intergenic | (0.15, -0.0077, P = 1.9e-06, N = 7824) | (0.22, -0.085, P = 0.15, N = 859) |
rs7355681(A)/2:85911339 | AC012454.4 | (0.59, 0.0041, P = 4.9e-06, N = 7824) | (0.72, 0.059, P = 0.27, N = 859) |
rs6131084(T)/20:1090381 | PSMF1 | (0.56, 0.0038, P = 2.7e-05, N = 7824) | (0.33, 0.041, P = 0.43, N = 859) |
rs2327855(A)/20:14477175* | MACROD2 | (0.58, 0.004, P = 9.6e-06, N = 7824) | (0.76, 0.00022, P = 1, N = 859) |
rs8120307(T)/20:35803188 | RPN2 | (0.62, -0.0038, P = 2.5e-05, N = 7824) | (0.35, 0.018, P = 0.71, N = 859) |
rs6129167(T)/20:37689228 | intergenic | (0.57, 0.0039, P = 1.1e-05, N = 7824) | (0.58, 0.052, P = 0.28, N = 859) |
rs6129620(A)/20:39144286* | intergenic | (0.33, 0.0038, P = 4.6e-05, N = 7824) | (0.15, 9.3e-05, P = 1, N = 859) |
rs241642(A)/20:3929299 | RNF24 | (0.44, 0.0038, P = 2.2e-05, N = 7824) | (0.71, -0.056, P = 0.28, N = 859) |
rs3848713(T)/20:44470676* | ACOT8 | (0.41, -0.0044, P = 1.1e-06, N = 7824) | (0.61, 0.043, P = 0.38, N = 859) |
rs4811828(T)/20:55809047 | BMP7 | (0.88, 0.0077, P = 5.9e-06, N = 7824) | (0.78, -0.081, P = 0.17, N = 859) |
rs6025935(A)/20:56536168 | RP13-379L11.2 | (0.38, -0.0038, P = 3.4e-05, N = 7824) | (0.24, 0.03, P = 0.59, N = 859) |
rs163787(A)/20:57574463* | CTSZ | (0.18, 0.0065, P = 4.7e-05, N = 7824) | (0.14, -0.023, P = 0.75, N = 859) |
rs3905228(A)/20:58105747 | intergenic | (0.47, 0.0041, P = 9e-06, N = 7824) | (0.32, 0.0032, P = 0.95, N = 859) |
rs4591420(A)/21:16077143* | intergenic | (0.33, -0.0037, P = 4.6e-05, N = 7824) | (0.19, -0.098, P = 0.12, N = 859) |
rs1028981(A)/21:21668483 | intergenic | (0.39, -0.005, P = 5.7e-07, N = 7824) | (0.41, -0.0064, P = 0.9, N = 859) |
rs1041755(T)/21:33238952* | intergenic | (0.37, 0.004, P = 1.2e-05, N = 7824) | (0.49, 0.074, P = 0.13, N = 859) |
rs8134847(T)/21:35020161 | ITSN1 | (0.4, 0.0041, P = 8.4e-06, N = 7824) | (0.34, -0.038, P = 0.45, N = 859) |
rs2156411(A)/21:37580807 | DOPEY2 | (0.64, 0.0038, P = 3.1e-05, N = 7824) | (0.85, 0.027, P = 0.69, N = 859) |
rs378999(T)/21:40434320 | intergenic | (0.64, -0.0044, P = 1.2e-06, N = 7824) | (0.62, 0.029, P = 0.56, N = 859) |
rs8127674(A)/21:42882003 | TMPRSS2 | (0.59, -0.0041, P = 5.9e-06, N = 7824) | (0.67, 0.063, P = 0.22, N = 859) |
rs220168(A)/21:43554571* | UMODL1 | (0.52, -0.004, P = 9.3e-06, N = 7824) | (0.52, 0.061, P = 0.2, N = 859) |
rs12627165(A)/21:46736694 | intergenic | (0.35, 0.0044, P = 3.5e-06, N = 7824) | (0.64, 0.061, P = 0.2, N = 859) |
rs9613019(T)/22:26174397 | MYO18B | (0.41, -0.0041, P = 7.4e-06, N = 7824) | (0.72, -0.019, P = 0.73, N = 859) |
rs137181(A)/22:26666246 | SEZ6L | (0.51, -0.0037, P = 3.5e-05, N = 7824) | (0.61, -0.061, P = 0.23, N = 859) |
rs5999027(T)/22:33989858* | LARGE | (0.43, -0.004, P = 9.5e-06, N = 7824) | (0.29, -0.0044, P = 0.93, N = 859) |
rs132667(A)/22:36565029* | Z95114.3 | (0.54, 0.0038, P = 2.4e-05, N = 7824) | (0.64, -0.026, P = 0.6, N = 859) |
rs10854693(A)/22:37252010* | CTA-833B7.2 | (0.56, -0.0039, P = 3.4e-05, N = 7824) | (0.89, -0.059, P = 0.45, N = 859) |
rs140572(A)/22:45451727* | intergenic | (0.51, 0.0047, P = 2.2e-07, N = 7824) | (0.15, -0.035, P = 0.61, N = 859) |
rs131919(T)/22:47447437* | TBC1D22A | (0.33, -0.0046, P = 9e-07, N = 7824) | (0.41, -0.0032, P = 0.95, N = 859) |
rs9838540(A)/3:101986003* | ZPLD1 | (0.61, 0.0047, P = 1.8e-07, N = 7824) | (0.21, 0.064, P = 0.27, N = 859) |
rs6437539(T)/3:104513265 | intergenic | (0.63, -0.0039, P = 2e-05, N = 7824) | (0.66, 0.00063, P = 0.99, N = 859) |
rs2924149(T)/3:10991346 | intergenic | (0.38, 0.0038, P = 2.6e-05, N = 7824) | (0.1, -0.051, P = 0.52, N = 859) |
rs4831113(T)/3:115308015* | intergenic | (0.39, -0.0038, P = 2.8e-05, N = 7824) | (0.87, 0.032, P = 0.65, N = 859) |
rs201908613(CT)/3:116189185 | LSAMP | (0.017, 0.29, P = 2.3e-06, N = 1954) | (0.041, 0.044, P = 0.72, N = 859) |
rs9873519(T)/3:124921457* | SLC12A8 | (0.54, 0.0037, P = 3.4e-05, N = 7824) | (0.31, 0.075, P = 0.15, N = 859) |
rs1225019(A)/3:131669077 | CPNE4 | (0.58, -0.0043, P = 1.6e-06, N = 7824) | (0.32, -0.067, P = 0.19, N = 859) |
rs13059536(T)/3:139578650 | RP11-166D18.1 | (0.11, 0.007, P = 4.1e-05, N = 7824) | (0.14, 0.067, P = 0.34, N = 859) |
rs6795522(T)/3:143101289* | SLC9A9 | (0.61, 0.0037, P = 4.9e-05, N = 7824) | (0.63, -0.035, P = 0.49, N = 859) |
rs9872790(T)/3:143238874 | SLC9A9 | (0.5, -0.0039, P = 1.9e-05, N = 7824) | (0.4, 0.028, P = 0.56, N = 859) |
rs355748(T)/3:153964496 | ARHGEF26 | (0.38, -0.0038, P = 3.3e-05, N = 7824) | (0.41, 0.0072, P = 0.88, N = 859) |
rs9942113(A)/3:156231801 | KCNAB1 | (0.38, -0.0049, P = 6e-08, N = 7824) | (0.55, 0.0036, P = 0.94, N = 859) |
rs11707952(A)/3:158665225 | intergenic | (0.57, -0.0046, P = 3.9e-07, N = 7824) | (0.56, -0.042, P = 0.38, N = 859) |
rs4525910(A)/3:159646612 | IL12A-AS1 | (0.41, -0.0043, P = 2.2e-06, N = 7824) | (0.22, -0.071, P = 0.23, N = 859) |
rs17236487(T)/3:160171926 | TRIM59 | (0.78, 0.0062, P = 4.7e-05, N = 7824) | (0.83, -0.061, P = 0.34, N = 859) |
rs9863328(T)/3:164360829 | intergenic | (0.43, 0.004, P = 9.1e-06, N = 7824) | (0.34, -0.052, P = 0.29, N = 859) |
rs1430435(T)/3:169079193 | MECOM | (0.49, 0.0044, P = 1.3e-06, N = 7824) | (0.38, -0.021, P = 0.67, N = 859) |
rs6793266(T)/3:175102338* | NAALADL2 | (0.39, -0.0043, P = 2.9e-06, N = 7824) | (0.34, 0.13, P = 0.011, N = 859) |
rs9842133(T)/3:179664102 | PEX5L | (0.66, 0.0064, P = 4.2e-12, N = 7824) | (0.47, 0.033, P = 0.5, N = 859) |
rs6785807(A)/3:181718601 | RP11-416O18.1 | (0.12, -0.0068, P = 3.6e-05, N = 7824) | (0.054, -0.094, P = 0.38, N = 859) |
rs1026527(T)/3:22609529 | intergenic | (0.58, 0.0038, P = 2e-05, N = 7824) | (0.62, -0.07, P = 0.16, N = 859) |
rs6550934(A)/3:25052333* | AC133680.1 | (0.47, 0.0038, P = 2.3e-05, N = 7824) | (0.76, -0.036, P = 0.52, N = 859) |
rs294280(T)/3:31131692 | intergenic | (0.39, 0.0042, P = 3.4e-06, N = 7824) | (0.52, 0.057, P = 0.25, N = 859) |
rs968103(T)/3:34234573 | AC018359.1 | (0.45, 0.0043, P = 1.5e-06, N = 7824) | (0.78, -0.02, P = 0.72, N = 859) |
rs1916227(A)/3:34847097 | intergenic | (0.48, -0.004, P = 1e-05, N = 7824) | (0.6, 0.043, P = 0.38, N = 859) |
rs7632967(A)/3:34906302 | intergenic | (0.55, -0.0043, P = 1.7e-06, N = 7824) | (0.31, 6.6e-05, P = 1, N = 859) |
rs769809(A)/3:3767212 | SUMF1 | (0.57, 0.0046, P = 3.5e-07, N = 7824) | (0.75, -0.0082, P = 0.88, N = 859) |
rs533980308(AT)/3:49106976 | QRICH1 | (0.021, -0.86, P = 9.9e-06, N = 1954) | (0.41, 0.061, P = 0.22, N = 859) |
rs11915024(T)/3:59492480* | RP11-719N22.2 | (0.4, -0.0044, P = 9.6e-07, N = 7824) | (0.61, -0.013, P = 0.8, N = 859) |
rs9874660(A)/3:61931353 | PTPRG | (0.91, 0.015, P = 2.2e-05, N = 7824) | (0.84, 0.064, P = 0.34, N = 859) |
rs6797048(A)/3:68904763 | FAM19A4 | (0.62, -0.0038, P = 3e-05, N = 7824) | (0.8, 0.024, P = 0.69, N = 859) |
rs6798065(T)/3:75388243 | MYLKP1 | (0.34, -0.0038, P = 2.6e-05, N = 7824) | (0.58, -0.011, P = 0.82, N = 859) |
rs9880736(A)/3:79318988 | ROBO1 | (0.54, -0.0044, P = 1.5e-06, N = 7824) | (0.91, -0.054, P = 0.5, N = 859) |
rs1431156(G)/3:88082149 | intergenic | (0.98, -0.35, P = 3.6e-06, N = 1954) | (0.72, 0.074, P = 0.18, N = 859) |
rs9829940(T)/3:96167649 | intergenic | (0.56, 0.0038, P = 2e-05, N = 7824) | (0.83, -0.00075, P = 0.99, N = 859) |
rs9819702(T)/3:97886592 | OR5H15 | (0.36, -0.0042, P = 5.2e-06, N = 7824) | (0.37, -0.058, P = 0.24, N = 859) |
rs1114130(T)/4:101363516* | EMCN | (0.34, -0.0042, P = 4.3e-06, N = 7824) | (0.41, -0.088, P = 0.069, N = 859) |
rs11722041(T)/4:115411284 | intergenic | (0.41, 0.0039, P = 1.8e-05, N = 7824) | (0.061, 0.061, P = 0.55, N = 859) |
rs12510909(T)/4:139206509 | RP11-733C7.1 | (0.53, -0.0043, P = 1.8e-06, N = 7824) | (0.72, -0.027, P = 0.61, N = 859) |
rs11930385(T)/4:146845752* | ZNF827 | (0.4, -0.0043, P = 2.1e-06, N = 7824) | (0.69, -0.045, P = 0.4, N = 859) |
rs7662505(A)/4:147982321 | intergenic | (0.4, -0.004, P = 1e-05, N = 7824) | (0.39, 0.018, P = 0.72, N = 859) |
rs9997562(T)/4:14896179* | intergenic | (0.52, 0.0043, P = 1.9e-06, N = 7824) | (0.27, -0.075, P = 0.18, N = 859) |
rs6535870(T)/4:153639925 | intergenic | (0.65, -0.005, P = 5.5e-08, N = 7824) | (0.42, 0.038, P = 0.43, N = 859) |
rs2286460(A)/4:15964040* | FGFBP2 | (0.54, -0.0045, P = 8.4e-07, N = 7824) | (0.43, 0.012, P = 0.8, N = 859) |
rs195934(A)/4:163582000 | intergenic | (0.64, 0.0039, P = 2e-05, N = 7824) | (0.71, 0.027, P = 0.62, N = 859) |
rs4860022(T)/4:167693875 | SPOCK3 | (0.34, -0.0055, P = 9.6e-10, N = 7824) | (0.28, 0.066, P = 0.24, N = 859) |
rs12503744(A)/4:172203928* | intergenic | (0.02, -0.034, P = 4.8e-06, N = 7824) | (0.32, -0.014, P = 0.78, N = 859) |
rs7686890(T)/4:178411431 | RP11-130F10.1 | (0.39, 0.004, P = 8e-06, N = 7824) | (0.74, -0.057, P = 0.3, N = 859) |
rs2309339(C)/4:181350035 | intergenic | (0.65, 0.0041, P = 7.1e-06, N = 7824) | (0.73, 0.0019, P = 0.97, N = 859) |
rs1872445(T)/4:186504058* | SORBS2 | (0.55, -0.0039, P = 1.3e-05, N = 7824) | (0.87, 0.068, P = 0.34, N = 859) |
rs10489008(A)/4:31718284* | intergenic | (0.49, 0.0045, P = 4.6e-07, N = 7824) | (0.87, -0.047, P = 0.52, N = 859) |
rs12500588(A)/4:37111552 | RP11-103J17.1 | (0.09, -0.0076, P = 1.5e-05, N = 7824) | (0.44, -0.095, P = 0.047, N = 859) |
rs10517472(T)/4:38287333* | RP11-600L4.1 | (0.38, 0.0037, P = 4.3e-05, N = 7824) | (0.19, -0.001, P = 0.99, N = 859) |
rs7665019(T)/4:40600905 | RBM47 | (0.55, 0.0038, P = 2.2e-05, N = 7824) | (0.74, -0.016, P = 0.76, N = 859) |
rs4861126(C)/4:41643057 | LIMCH1 | (0.41, 0.0043, P = 1.6e-06, N = 7824) | (0.47, -0.043, P = 0.38, N = 859) |
rs7673523(C)/4:4688246 | STX18-AS1 | (0.53, 0.0037, P = 3.6e-05, N = 7824) | (0.61, -0.016, P = 0.75, N = 859) |
rs1509657(T)/4:48213011* | TEC | (0.46, 0.0041, P = 6.3e-06, N = 7824) | (0.65, 0.015, P = 0.77, N = 859) |
rs6554156(T)/4:55042554 | FIP1L1 | (0.4, 0.0044, P = 1.1e-06, N = 7824) | (0.42, 0.062, P = 0.21, N = 859) |
rs2100765(C)/4:60855621 | intergenic | (0.59, 0.0039, P = 1.5e-05, N = 7824) | (0.28, 0.026, P = 0.63, N = 859) |
rs6852374(A)/4:61370159 | intergenic | (0.51, 0.0041, P = 4.4e-06, N = 7824) | (0.44, 0.0034, P = 0.94, N = 859) |
rs1390746(A)/4:79451461 | FRAS1 | (0.55, 0.0037, P = 3.3e-05, N = 7824) | (0.3, 0.022, P = 0.67, N = 859) |
rs7435034(A)/4:88146267 | KLHL8 | (0.36, -0.0042, P = 3.4e-06, N = 7824) | (0.18, 0.0057, P = 0.93, N = 859) |
rs13434630(A)/4:88464872* | intergenic | (0.46, -0.0039, P = 1.2e-05, N = 7824) | (0.47, -0.018, P = 0.7, N = 859) |
rs2120372(A)/4:90983723* | intergenic | (0.59, -0.0037, P = 4.2e-05, N = 7824) | (0.61, 0.021, P = 0.68, N = 859) |
rs7732790(A)/5:103428431* | RP11-138J23.1 | (0.59, -0.0042, P = 3.7e-06, N = 7824) | (0.43, -0.013, P = 0.79, N = 859) |
rs2962321(T)/5:10577895 | ANKRD33B | (0.9, -0.0077, P = 6e-06, N = 7824) | (0.85, 0.044, P = 0.52, N = 859) |
rs10065061(T)/5:107916909 | intergenic | (0.52, 0.0037, P = 4.1e-05, N = 7824) | (0.3, -0.064, P = 0.22, N = 859) |
rs461231(T)/5:110734739 | CAMK4 | (0.6, -0.0037, P = 4e-05, N = 7824) | (0.77, 0.033, P = 0.58, N = 859) |
rs1366201(A)/5:115321833 | AQPEP | (0.6, 0.0037, P = 3.9e-05, N = 7824) | (0.84, -0.051, P = 0.45, N = 859) |
rs246946(T)/5:126652742 | MEGF10 | (0.68, 0.0041, P = 9.3e-06, N = 7824) | (0.69, 0.026, P = 0.62, N = 859) |
rs6866597(T)/5:128877617* | ADAMTS19 | (0.52, 0.0042, P = 3.6e-06, N = 7824) | (0.12, 0.064, P = 0.38, N = 859) |
rs10900805(A)/5:131580851* | P4HA2 | (0.1, -0.007, P = 3.8e-05, N = 7824) | (0.11, -0.076, P = 0.33, N = 859) |
rs7737937(A)/5:131614981* | P4HA2 | (0.15, -0.011, P = 4.9e-11, N = 7824) | (0.19, 0.066, P = 0.3, N = 859) |
rs419291(T)/5:131633355* | SLC22A4 | (0.37, 0.0079, P = 3.1e-18, N = 7824) | (0.22, 0.1, P = 0.086, N = 859) |
rs6596361(T)/5:136311770 | SPOCK1 | (0.59, 0.0044, P = 9.2e-07, N = 7824) | (0.58, -0.033, P = 0.5, N = 859) |
rs1368388(A)/5:147897161* | HTR4 | (0.42, -0.0041, P = 4.6e-06, N = 7824) | (0.64, -0.035, P = 0.48, N = 859) |
rs6862024(A)/5:150428871 | TNIP1 | (0.37, -0.0055, P = 9e-10, N = 7824) | (0.089, 0.0067, P = 0.94, N = 859) |
rs6877344(T)/5:150742650* | CTB-23I7.1 | (0.38, 0.004, P = 1e-05, N = 7824) | (0.3, -0.021, P = 0.69, N = 859) |
rs1317661(A)/5:151647363 | CTB-12O2.1 | (0.48, 0.0043, P = 1.9e-06, N = 7824) | (0.35, -0.0035, P = 0.94, N = 859) |
rs753768(A)/5:152516889 | AC091969.1 | (0.42, 0.0039, P = 1.4e-05, N = 7824) | (0.39, 2e-05, P = 1, N = 859) |
rs9313491(C)/5:156621905 | ITK | (0.64, 0.0047, P = 6.1e-07, N = 7824) | (0.7, 0.026, P = 0.62, N = 859) |
rs17651643(A)/5:16892438* | MYO10 | (0.1, -0.011, P = 1.3e-05, N = 7824) | (0.23, -0.065, P = 0.25, N = 859) |
rs2471005(A)/5:174882207* | snoU13 | (0.39, 0.004, P = 1e-05, N = 7824) | (0.14, 0.091, P = 0.18, N = 859) |
rs4866725(T)/5:2164174 | intergenic | (0.56, -0.0038, P = 2.3e-05, N = 7824) | (0.77, -0.02, P = 0.73, N = 859) |
rs899584(T)/5:26826799 | intergenic | (0.36, -0.0047, P = 2.9e-07, N = 7824) | (0.58, 0.07, P = 0.15, N = 859) |
rs13162168(A)/5:30222534 | intergenic | (0.38, -0.0041, P = 6.4e-06, N = 7824) | (0.24, -0.044, P = 0.45, N = 859) |
rs4242263(A)/5:36415364 | intergenic | (0.36, 0.0038, P = 2.7e-05, N = 7824) | (0.55, 0.079, P = 0.11, N = 859) |
rs42864(C)/5:39283776 | C9 | (0.64, -0.0039, P = 2.4e-05, N = 7824) | (0.87, -0.0092, P = 0.9, N = 859) |
rs1479614(A)/5:50823338 | intergenic | (0.61, -0.0048, P = 9.9e-08, N = 7824) | (0.82, -0.097, P = 0.12, N = 859) |
rs2291631(A)/5:75013036 | POC5 | (0.05, -0.011, P = 1.3e-05, N = 7824) | (0.038, -0.13, P = 0.31, N = 859) |
rs1392482(T)/5:7555561 | ADCY2 | (0.4, -0.0039, P = 1.4e-05, N = 7824) | (0.25, -0.0029, P = 0.96, N = 859) |
rs13182512(A)/5:78573790* | JMY | (0.38, -0.005, P = 3.4e-08, N = 7824) | (0.62, 0.057, P = 0.25, N = 859) |
rs11750489(A)/5:80391253 | RASGRF2 | (0.89, 0.0097, P = 4.9e-05, N = 7824) | (0.98, 0.15, P = 0.36, N = 859) |
rs1827396(A)/5:81975108 | intergenic | (0.43, -0.0038, P = 3.2e-05, N = 7824) | (0.64, -0.054, P = 0.29, N = 859) |
rs699554(T)/5:87022350 | CTD-2316B1.2 | (0.43, 0.0038, P = 3.2e-05, N = 7824) | (0.5, 0.016, P = 0.73, N = 859) |
rs11267778(GCCTCTGCCCATGAC)/6:108384189 | OSTM1 | (0.019, -0.15, P = 4.5e-06, N = 1954) | (0.99, 0.013, P = 0.95, N = 859) |
rs4713396(A)/6:11312130 | NEDD9 | (0.45, -0.0044, P = 1.2e-06, N = 7824) | (0.6, -0.044, P = 0.39, N = 859) |
rs10872303(T)/6:126255034 | NCOA7 | (0.53, 0.004, P = 1.1e-05, N = 7824) | (0.42, -0.037, P = 0.44, N = 859) |
rs6917098(A)/6:132925613 | TAAR3 | (0.61, 0.0038, P = 3.1e-05, N = 7824) | (0.57, 0.01, P = 0.83, N = 859) |
rs459625(T)/6:134260676 | intergenic | (0.43, -0.0049, P = 5.2e-08, N = 7824) | (0.84, 0.16, P = 0.017, N = 859) |
rs6908972(T)/6:134684613* | intergenic | (0.082, -0.009, P = 8e-07, N = 7824) | (0.13, 0.062, P = 0.38, N = 859) |
rs4267967(T)/6:135272477 | ALDH8A1 | (0.56, 0.0037, P = 3.3e-05, N = 7824) | (0.52, 0.064, P = 0.18, N = 859) |
rs7760148(A)/6:140201675* | RP5-899B16.2 | (0.36, -0.0042, P = 3.4e-06, N = 7824) | (0.52, 0.092, P = 0.055, N = 859) |
rs1327674(T)/6:147100481* | ADGB | (0.43, -0.0037, P = 3.8e-05, N = 7824) | (0.24, -0.015, P = 0.79, N = 859) |
rs12201109(A)/6:149240393 | UST | (0.37, -0.0045, P = 1.1e-06, N = 7824) | (0.3, -0.044, P = 0.41, N = 859) |
rs12197879(T)/6:151895777* | CCDC170 | (0.6, -0.0044, P = 1.2e-06, N = 7824) | (0.16, -0.022, P = 0.73, N = 859) |
rs9383693(T)/6:154474871 | IPCEF1 | (0.55, -0.0042, P = 3.6e-06, N = 7824) | (0.53, 0.073, P = 0.14, N = 859) |
rs2504927(T)/6:160860430* | SLC22A3 | (0.44, -0.0041, P = 4.3e-06, N = 7824) | (0.47, -0.092, P = 0.058, N = 859) |
rs6915537(A)/6:16900872 | intergenic | (0.41, 0.0038, P = 2.5e-05, N = 7824) | (0.31, -0.027, P = 0.6, N = 859) |
rs9466453(A)/6:22735375 | intergenic | (0.52, 0.0038, P = 2.1e-05, N = 7824) | (0.46, 0.036, P = 0.46, N = 859) |
rs9467703(A)/6:26318903* | HIST1H3PS1 | (0.37, -0.0045, P = 8.3e-07, N = 7824) | (0.098, -0.063, P = 0.44, N = 859) |
rs2235232(A)/6:27326863 | ZNF204P | (0.54, 0.0039, P = 1.3e-05, N = 7824) | (0.7, -0.031, P = 0.56, N = 859) |
rs1610649(T)/6:29768917* | HLA-P | (0.61, -0.0049, P = 7.9e-08, N = 7824) | (0.52, 0.076, P = 0.12, N = 859) |
rs9394368(C)/6:36630525 | intergenic | (0.35, -0.0037, P = 4.7e-05, N = 7824) | (0.56, -0.034, P = 0.49, N = 859) |
rs1109773(C)/6:39289164 | KCNK16 | (0.37, 0.004, P = 9e-06, N = 7824) | (0.47, 0.041, P = 0.4, N = 859) |
rs2396004(A)/6:43355851* | intergenic | (0.44, 0.0049, P = 4.3e-08, N = 7824) | (0.86, 0.094, P = 0.16, N = 859) |
rs6937910(T)/6:51682409 | PKHD1 | (0.53, -0.0043, P = 1.4e-06, N = 7824) | (0.53, 0.013, P = 0.79, N = 859) |
rs685893(A)/6:53961784 | MLIP | (0.64, -0.0037, P = 4.4e-05, N = 7824) | (0.53, 0.017, P = 0.73, N = 859) |
rs852941(A)/6:72160400 | RP1-288M22.2 | (0.42, 0.0037, P = 3.7e-05, N = 7824) | (0.56, 0.049, P = 0.34, N = 859) |
rs1482567(T)/6:72671565 | RIMS1 | (0.62, 0.004, P = 9.3e-06, N = 7824) | (0.62, -0.0029, P = 0.95, N = 859) |
rs9351906(A)/6:72987855 | RIMS1 | (0.4, 0.0037, P = 4.1e-05, N = 7824) | (0.27, 0.032, P = 0.56, N = 859) |
rs2789599(A)/6:73105163 | RIMS1 | (0.5, 0.0043, P = 2.2e-06, N = 7824) | (0.45, 0.095, P = 0.046, N = 859) |
rs2173986(C)/6:8330781* | RP11-203H2.1 | (0.5, -0.0039, P = 1.5e-05, N = 7824) | (0.22, -0.0065, P = 0.91, N = 859) |
rs9450000(A)/6:85373267 | intergenic | (0.89, -0.0072, P = 1.8e-05, N = 7824) | (0.77, 0.075, P = 0.19, N = 859) |
rs998775(A)/6:93859619 | intergenic | (0.59, -0.004, P = 1.2e-05, N = 7824) | (0.68, 0.0054, P = 0.92, N = 859) |
rs2704975(A)/7:106065174 | CTB-111H14.1 | (0.39, 0.0037, P = 4.3e-05, N = 7824) | (0.58, 0.01, P = 0.83, N = 859) |
rs2189438(A)/7:10719393 | intergenic | (0.51, 0.0041, P = 4.5e-06, N = 7824) | (0.45, 0.041, P = 0.39, N = 859) |
rs10255200(T)/7:123679743 | RP5-921G16.1 | (0.48, -0.0039, P = 1.1e-05, N = 7824) | (0.45, 0.022, P = 0.66, N = 859) |
rs983849(T)/7:125248586 | intergenic | (0.43, 0.0039, P = 1.3e-05, N = 7824) | (0.63, 0.011, P = 0.83, N = 859) |
rs2106185(T)/7:127184315 | intergenic | (0.39, 0.009, P = 1.9e-05, N = 7824) | (0.04, 0.034, P = 0.79, N = 859) |
rs13231650(T)/7:141398942 | KIAA1147 | (0.43, 0.0041, P = 4.8e-06, N = 7824) | (0.19, -0.035, P = 0.58, N = 859) |
rs6948399(C)/7:144175166 | TPK1 | (0.64, 0.54, P = 3.5e-06, N = 1954) | (0.31, 0.12, P = 0.022, N = 859) |
rs17585288(T)/7:146226654 | CNTNAP2 | (0.91, -0.0099, P = 1.2e-05, N = 7824) | (0.98, 0.065, P = 0.73, N = 859) |
rs2961253(T)/7:15175427 | intergenic | (0.55, -0.005, P = 5.7e-07, N = 7824) | (0.67, 0.05, P = 0.32, N = 859) |
rs9654697(T)/7:155395948 | intergenic | (0.6, 0.004, P = 1.2e-05, N = 7824) | (0.31, 0.05, P = 0.34, N = 859) |
rs115807806(T)/7:157921957 | PTPRN2 | (0.085, -0.15, P = 4.9e-06, N = 1954) | (0.02, 0.24, P = 0.16, N = 859) |
rs10231585(T)/7:20182020 | MACC1 | (0.57, -0.0039, P = 1.8e-05, N = 7824) | (0.29, 0.041, P = 0.43, N = 859) |
rs13238939(T)/7:21685861* | DNAH11 | (0.51, 0.004, P = 1e-05, N = 7824) | (0.16, 0.01, P = 0.88, N = 859) |
rs3757440(A)/7:2272936 | MAD1L1 | (0.62, 0.0037, P = 4.7e-05, N = 7824) | (0.65, -0.044, P = 0.38, N = 859) |
rs1544412(T)/7:26498968 | AC004540.5 | (0.36, -0.0043, P = 2.7e-06, N = 7824) | (0.42, -0.06, P = 0.21, N = 859) |
rs12484(T)/7:2768626* | GNA12 | (0.43, -0.005, P = 5.7e-07, N = 7824) | (0.6, 0.015, P = 0.76, N = 859) |
rs4259315(G)/7:28907437 | intergenic | (0.49, -0.17, P = 7.9e-06, N = 1954) | (0.13, -0.014, P = 0.85, N = 859) |
rs4722438(A)/7:3155813* | intergenic | (0.44, 0.0044, P = 1.2e-06, N = 7824) | (0.56, 0.061, P = 0.21, N = 859) |
rs10275028(T)/7:34889222 | NPSR1 | (0.65, 0.0046, P = 4.9e-07, N = 7824) | (0.62, 0.0098, P = 0.84, N = 859) |
rs4433042(A)/7:43522684 | HECW1 | (0.56, 0.0037, P = 3.4e-05, N = 7824) | (0.82, 0.057, P = 0.38, N = 859) |
rs1866570(C)/7:45166118 | intergenic | (0.58, -0.004, P = 7.8e-06, N = 7824) | (0.4, -0.014, P = 0.77, N = 859) |
rs3973242(C)/7:75130325 | AC018720.10 | (0.87, -0.23, P = 8.6e-07, N = 1954) | (0.99, -0.13, P = 0.51, N = 859) |
rs2714684(C)/7:79291370 | intergenic | (0.54, -0.004, P = 8.8e-06, N = 7824) | (0.56, 0.024, P = 0.61, N = 859) |
rs1285441(C)/7:9219283 | intergenic | (0.061, -0.24, P = 4.6e-07, N = 1954) | (0.15, 0.0083, P = 0.9, N = 859) |
rs4634560(T)/7:94332392 | intergenic | (0.91, -0.009, P = 6.8e-06, N = 7824) | (0.85, 0.00044, P = 0.99, N = 859) |
rs10239136(T)/7:9571623* | intergenic | (0.6, 0.0044, P = 1.5e-06, N = 7824) | (0.45, -0.051, P = 0.29, N = 859) |
rs7799978(A)/7:9716062 | intergenic | (0.82, 0.0072, P = 4.5e-06, N = 7824) | (0.63, -0.02, P = 0.7, N = 859) |
rs724752(T)/7:98573295 | TRRAP | (0.37, 0.0043, P = 2.7e-06, N = 7824) | (0.19, 0.14, P = 0.02, N = 859) |
rs34742539(A)/8:113805521 | CSMD3 | (0.018, -0.032, P = 3.7e-05, N = 7824) | (0.017, 0.12, P = 0.52, N = 859) |
rs2068985(C)/8:114053798 | CSMD3 | (0.35, -0.0041, P = 6.8e-06, N = 7824) | (0.72, 0.002, P = 0.97, N = 859) |
rs7836397(A)/8:121875083 | intergenic | (0.43, -0.0038, P = 3.4e-05, N = 7824) | (0.069, -0.081, P = 0.39, N = 859) |
rs7461025(T)/8:127654091 | RP11-89K10.1 | (0.59, 0.0043, P = 2.7e-06, N = 7824) | (0.2, -0.021, P = 0.73, N = 859) |
rs10481187(T)/8:132479119 | intergenic | (0.37, 0.0045, P = 9.7e-07, N = 7824) | (0.36, 0.035, P = 0.49, N = 859) |
rs273401(A)/8:132525949 | intergenic | (0.41, 0.0039, P = 2.1e-05, N = 7824) | (0.4, -0.0068, P = 0.89, N = 859) |
rs865488(T)/8:133938622 | TG | (0.68, -0.0041, P = 6.6e-06, N = 7824) | (0.6, 0.041, P = 0.41, N = 859) |
rs10111368(A)/8:134646398 | intergenic | (0.55, -0.0041, P = 5e-06, N = 7824) | (0.75, 0.044, P = 0.43, N = 859) |
rs10505611(T)/8:134662095 | intergenic | (0.85, 0.0069, P = 2.3e-05, N = 7824) | (0.97, -0.12, P = 0.43, N = 859) |
rs13275417(A)/8:138365307 | intergenic | (0.53, 0.0038, P = 2.9e-05, N = 7824) | (0.38, -0.031, P = 0.53, N = 859) |
rs6988796(T)/8:139312435 | FAM135B | (0.36, 0.0093, P = 1.5e-05, N = 7824) | (0.42, -0.016, P = 0.74, N = 859) |
rs7462991(T)/8:17934029* | ASAH1 | (0.92, 0.0096, P = 4e-05, N = 7824) | (0.86, -0.16, P = 0.02, N = 859) |
rs6984824(A)/8:1910078 | ARHGEF10 | (0.1, -0.0075, P = 1.5e-05, N = 7824) | (0.14, -0.057, P = 0.41, N = 859) |
rs6988339(A)/8:32545916 | NRG1 | (0.61, -0.0039, P = 2.1e-05, N = 7824) | (0.9, -0.17, P = 0.034, N = 859) |
rs7817745(T)/8:38550136 | intergenic | (0.61, -0.0039, P = 1.8e-05, N = 7824) | (0.53, 0.032, P = 0.51, N = 859) |
rs341815(A)/8:49978424* | C8orf22 | (0.36, 0.0038, P = 3e-05, N = 7824) | (0.25, 0.057, P = 0.3, N = 859) |
rs1160269(T)/8:5516034* | RP11-281H11.1 | (0.44, -0.0039, P = 1.4e-05, N = 7824) | (0.17, -0.043, P = 0.48, N = 859) |
rs761722563(CAATA)/8:59764368 | TOX | (0.024, 0.14, P = 1.7e-06, N = 1954) | (0.22, 0.03, P = 0.6, N = 859) |
rs12541401(A)/8:62805280* | RP11-705O24.2 | (0.46, -0.0039, P = 1.1e-05, N = 7824) | (0.14, 0.026, P = 0.7, N = 859) |
rs10095757(C)/8:73043160 | intergenic | (0.6, 0.0038, P = 2.4e-05, N = 7824) | (0.54, 0.021, P = 0.66, N = 859) |
rs4568622(T)/8:85779998 | RALYL | (0.58, -0.0039, P = 1.4e-05, N = 7824) | (0.29, -0.023, P = 0.66, N = 859) |
rs6468523(T)/8:87900893 | CNBD1 | (0.48, 0.0039, P = 1.9e-05, N = 7824) | (0.29, 0.071, P = 0.18, N = 859) |
rs7837480(A)/8:94468378 | LINC00535 | (0.48, -0.004, P = 9.3e-06, N = 7824) | (0.64, -0.037, P = 0.48, N = 859) |
rs6471514(T)/8:96100272 | RP11-320N21.2 | (0.54, -0.0042, P = 2.7e-06, N = 7824) | (0.61, 0.05, P = 0.31, N = 859) |
rs7815790(A)/8:98902730 | MATN2 | (0.39, -0.0039, P = 1.8e-05, N = 7824) | (0.5, -0.0076, P = 0.87, N = 859) |
rs2780956(A)/9:103348634 | MURC | (0.43, -0.0037, P = 4.5e-05, N = 7824) | (0.26, -0.053, P = 0.34, N = 859) |
rs10820588(T)/9:106722204 | intergenic | (0.56, 0.0048, P = 1.6e-07, N = 7824) | (0.38, -0.059, P = 0.24, N = 859) |
rs1507515(A)/9:106989653* | intergenic | (0.54, 0.0041, P = 5.2e-06, N = 7824) | (0.6, -0.015, P = 0.76, N = 859) |
rs2777788(A)/9:107662701* | ABCA1 | (0.64, -0.005, P = 5.7e-07, N = 7824) | (0.27, -0.021, P = 0.7, N = 859) |
rs72694252(G)/9:11126335 | intergenic | (0.18, 0.2, P = 3.4e-06, N = 1954) | (0.048, -0.033, P = 0.76, N = 859) |
rs1339881(A)/9:111488532 | intergenic | (0.68, -0.0038, P = 2.7e-05, N = 7824) | (0.58, -0.0021, P = 0.97, N = 859) |
rs7026148(T)/9:115636588 | SNX30 | (0.39, -0.0045, P = 4.5e-07, N = 7824) | (0.33, -0.014, P = 0.8, N = 859) |
rs80794(T)/9:118993074* | PAPPA | (0.41, 0.004, P = 1.1e-05, N = 7824) | (0.51, 0.078, P = 0.098, N = 859) |
rs1929425(T)/9:12367988* | intergenic | (0.39, 0.0043, P = 2.1e-06, N = 7824) | (0.71, -0.066, P = 0.21, N = 859) |
rs10818924(T)/9:126913862* | intergenic | (0.63, -0.0045, P = 6.1e-07, N = 7824) | (0.57, -0.021, P = 0.65, N = 859) |
rs2491102(C)/9:130313343 | FAM129B | (0.45, 0.0039, P = 2.1e-05, N = 7824) | (0.63, -0.011, P = 0.82, N = 859) |
rs3003607(A)/9:130968398 | DNM1 | (0.39, -0.004, P = 1e-05, N = 7824) | (0.84, 0.021, P = 0.75, N = 859) |
rs482275(T)/9:135351031 | C9orf171 | (0.57, 0.0041, P = 7.6e-06, N = 7824) | (0.84, 0.018, P = 0.78, N = 859) |
rs13284789(T)/9:138581671 | SOHLH1 | (0.14, 0.0079, P = 9.2e-06, N = 7824) | (0.022, -0.12, P = 0.45, N = 859) |
rs7867510(A)/9:15353410 | RN7SL157P | (0.16, 0.0068, P = 1.7e-05, N = 7824) | (0.11, 0.084, P = 0.28, N = 859) |
rs7038757(T)/9:16222474 | C9orf92 | (0.65, 0.0041, P = 6.1e-06, N = 7824) | (0.27, -0.00024, P = 1, N = 859) |
rs641522(A)/9:22756895 | RP11-399D6.2 | (0.54, 0.004, P = 1.1e-05, N = 7824) | (0.88, -0.035, P = 0.64, N = 859) |
rs3842979(A)/9:28359979* | LINGO2 | (0.62, -0.0041, P = 1e-05, N = 7824) | (0.4, -0.026, P = 0.6, N = 859) |
rs2164073(T)/9:28890746 | MIR873 | (0.1, -0.0073, P = 1.9e-05, N = 7824) | (0.2, -0.04, P = 0.5, N = 859) |
rs7036584(A)/9:31022187 | intergenic | (0.4, -0.0038, P = 3.2e-05, N = 7824) | (0.4, 0.021, P = 0.66, N = 859) |
rs12377990(T)/9:32164142 | intergenic | (0.54, -0.0038, P = 2.5e-05, N = 7824) | (0.55, -0.015, P = 0.75, N = 859) |
rs7026407(T)/9:32502525 | DDX58 | (0.63, -0.0037, P = 4.7e-05, N = 7824) | (0.66, 0.099, P = 0.047, N = 859) |
rs639102(T)/9:3270045 | RFX3 | (0.45, 0.0038, P = 2.4e-05, N = 7824) | (0.89, -0.055, P = 0.47, N = 859) |
rs7850311(T)/9:38060968* | SHB | (0.42, -0.0039, P = 1.5e-05, N = 7824) | (0.5, -0.023, P = 0.64, N = 859) |
rs62536941(A)/9:38194965 | snoU13 | (0.17, -0.55, P = 4.8e-06, N = 1954) | (0.1, -0.057, P = 0.49, N = 859) |
rs945573(A)/9:71383888 | PIP5K1B | (0.49, 0.0037, P = 4.1e-05, N = 7824) | (0.65, 0.075, P = 0.14, N = 859) |
rs10869018(T)/9:74004478 | TRPM3 | (0.51, -0.0041, P = 5.2e-06, N = 7824) | (0.21, -0.00055, P = 0.99, N = 859) |
rs1333342(A)/9:77502160 | TRPM6 | (0.44, 0.0037, P = 4.4e-05, N = 7824) | (0.13, -0.092, P = 0.22, N = 859) |
rs7863838(T)/9:79425483 | PRUNE2 | (0.58, -0.0038, P = 2.8e-05, N = 7824) | (0.63, -0.0047, P = 0.92, N = 859) |
rs273472(A)/9:81876910 | intergenic | (0.58, -0.0039, P = 1.3e-05, N = 7824) | (0.51, -0.027, P = 0.57, N = 859) |
rs2164183(T)/9:83127968* | intergenic | (0.51, -0.004, P = 9.8e-06, N = 7824) | (0.21, -0.022, P = 0.71, N = 859) |
rs1246267(A)/9:86758069 | intergenic | (0.59, 0.0045, P = 1.1e-06, N = 7824) | (0.62, -0.029, P = 0.57, N = 859) |
rs700760(T)/9:88934624* | ZCCHC6 | (0.55, -0.0042, P = 2.6e-06, N = 7824) | (0.81, -0.025, P = 0.69, N = 859) |
rs11265783(T)/9:92121724 | intergenic | (0.36, 0.0037, P = 4.8e-05, N = 7824) | (0.21, 0.015, P = 0.8, N = 859) |
rs4743148(A)/9:98430574 | RP11-180I4.2 | (0.62, -0.0038, P = 3.2e-05, N = 7824) | (0.65, -0.13, P = 0.0096, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 535 | 5e-04 (-0.04- 0.041) P=0.98 | 19 | 243 | 0 (0- 31.6) | NA | NA | 0.0019 P=0.44 |
MR-Egger | 535 | -0.0028 (-0.045- 0.04) P=0.9 | 19 | 243 | 0 (0- 31.6) | 498 | 0.86 | 0.0019 P=0.44 |
Weighted median | 535 | 0.00069 (-0.062- 0.063) P=0.98 | 19 | 243 | 0 (0- 31.6) | NA | NA | 0.0019 P=0.44 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0 | 0.02 | 0.02 | 0.98 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 399 | 0.00085 (-0.039- 0.04) P=0.97 | 25 | 243 | 0 (0- 3.58) | NA | NA | 0.00017 P=0.95 |
MR-Egger | 399 | 0.00058 (-0.042- 0.043) P=0.98 | 25 | 243 | 0 (0- 3.58) | 352 | 0.95 | 0.00017 P=0.95 |
Weighted median | 399 | 0.00071 (-0.062- 0.064) P=0.98 | 25 | 243 | 0 (0- 3.58) | NA | NA | 0.00017 P=0.95 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0 | 0.02 | 0.04 | 0.97 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Choline (Shin et al/Long et al) | eGFR (CSSCD) |
rs11804649(T)/1:113348570* | intergenic | (0.18, -0.0065, P = 4.5e-05, N = 7824) | (0.081, 0.026, P = 0.76, N = 859) |
rs55934782(G)/1:182577385* | RGS16 | (0.21, -0.19, P = 3e-06, N = 1955) | (0.042, 0.026, P = 0.83, N = 859) |
rs3737875(A)/1:203140671 | MYBPH | (0.087, -0.0093, P = 4.9e-05, N = 7824) | (0.09, 0.017, P = 0.84, N = 859) |
rs12562454(T)/1:26671084* | AIM1L | (0.2, -0.0067, P = 1.7e-05, N = 7824) | (0.14, -0.09, P = 0.21, N = 859) |
rs2666482(A)/1:62716806 | KANK4 | (0.74, -0.0063, P = 4.6e-05, N = 7824) | (0.69, -0.058, P = 0.28, N = 859) |
rs12039115(T)/1:62995263* | DOCK7 | (0.13, -0.0088, P = 1.9e-07, N = 7824) | (0.11, -0.037, P = 0.62, N = 859) |
rs6577322(A)/1:99164434* | SNX7 | (0.26, 0.0061, P = 2.9e-05, N = 7824) | (0.21, 0.012, P = 0.83, N = 859) |
rs6584573(C)/10:105570406* | SH3PXD2A | (0.016, 0.024, P = 1.3e-05, N = 7824) | (0.13, -0.11, P = 0.14, N = 859) |
rs17642749(T)/10:119647256* | intergenic | (0.95, -0.017, P = 2.7e-06, N = 7824) | (0.96, -0.15, P = 0.23, N = 859) |
rs2616664(A)/10:61485660 | SLC16A9 | (0.94, 0.011, P = 4.6e-05, N = 7824) | (0.84, 0.054, P = 0.43, N = 859) |
rs11253260(A)/10:625483* | DIP2C | (0.9, -0.0092, P = 3.6e-05, N = 7824) | (0.47, 0.068, P = 0.16, N = 859) |
rs9663814(A)/10:77738382* | C10orf11 | (0.62, 0.0069, P = 1.1e-06, N = 7824) | (0.4, -0.014, P = 0.77, N = 859) |
rs12253556(A)/10:93285009* | intergenic | (0.036, 0.51, P = 3.6e-06, N = 1955) | (0.27, -0.026, P = 0.63, N = 859) |
rs61878861(C)/11:337210 | RP11-326C3.15 | (0.32, -0.17, P = 4.9e-06, N = 1955) | (0.073, 0.0069, P = 0.94, N = 859) |
rs116190469(A)/11:88461300 | GRM5 | (0.059, 0.42, P = 5.5e-06, N = 1955) | (0.033, 0.058, P = 0.67, N = 859) |
rs10765693(A)/11:94403634* | RP11-867G2.8 | (0.12, 0.25, P = 8.1e-07, N = 1955) | (0.097, -0.044, P = 0.59, N = 859) |
rs11066907(A)/12:114486626* | intergenic | (0.19, -0.0065, P = 3.6e-05, N = 7824) | (0.28, -0.02, P = 0.7, N = 859) |
rs4765152(T)/12:124985150* | NCOR2 | (0.15, 0.0083, P = 2.3e-05, N = 7824) | (0.21, -0.05, P = 0.4, N = 859) |
rs11058334(A)/12:126281125 | intergenic | (0.023, -0.022, P = 4.3e-06, N = 7824) | (0.036, -0.07, P = 0.59, N = 859) |
rs7984957(C)/13:60814970* | intergenic | (0.78, -0.0065, P = 1.9e-05, N = 7824) | (0.78, -0.026, P = 0.66, N = 859) |
rs3904774(T)/13:74080133 | LINC00393 | (0.27, -0.0094, P = 5e-05, N = 7824) | (0.56, 0.068, P = 0.15, N = 859) |
rs1417497(C)/13:88128461 | MIR4500HG | (0.072, -0.011, P = 5.4e-06, N = 7824) | (0.12, -0.026, P = 0.73, N = 859) |
rs34569161(C)/13:96140764 | CLDN10-AS1 | (0.43, 0.13, P = 2.3e-06, N = 1955) | (0.72, -0.11, P = 0.046, N = 859) |
rs2297615(A)/14:20846521* | TEP1 | (0.78, 0.007, P = 8.2e-06, N = 7824) | (0.67, -0.049, P = 0.32, N = 859) |
rs1256105(T)/14:64826806 | TEX21P | (0.96, 0.014, P = 3e-05, N = 7824) | (0.97, -0.14, P = 0.3, N = 859) |
rs8003323(C)/14:70826166* | COX16 | (0.99, 0.031, P = 9.5e-06, N = 7824) | (0.96, 0.0094, P = 0.94, N = 859) |
rs11631911(A)/15:24915898 | NPAP1 | (0.85, 0.007, P = 2.4e-05, N = 7824) | (0.84, 0.0095, P = 0.88, N = 859) |
rs1906159(T)/15:40019682* | FSIP1 | (0.13, -0.0069, P = 3.5e-05, N = 7824) | (0.38, -0.055, P = 0.28, N = 859) |
rs8033100(T)/15:71977446* | THSD4 | (0.86, -0.0083, P = 4.9e-07, N = 7824) | (0.66, -0.016, P = 0.75, N = 859) |
rs4784175(A)/16:62213038 | intergenic | (0.86, -0.0091, P = 8.6e-06, N = 7824) | (0.98, -0.13, P = 0.44, N = 859) |
rs4888896(A)/16:79006490* | WWOX | (0.5, 0.0084, P = 2.8e-05, N = 7824) | (0.34, -0.019, P = 0.71, N = 859) |
rs11656215(T)/17:17453067* | PEMT | (0.5, -0.0079, P = 7.5e-08, N = 7824) | (0.32, -0.095, P = 0.076, N = 859) |
rs11867208(T)/17:17504609* | RP11-524F11.2 | (0.39, 0.0062, P = 1.4e-05, N = 7824) | (0.4, 0.11, P = 0.025, N = 859) |
rs7215931(A)/17:30099125 | RP11-805L22.3 | (0.2, 0.0079, P = 1.3e-06, N = 7824) | (0.15, 0.032, P = 0.64, N = 859) |
rs2053158(A)/17:73393459* | GRB2 | (0.83, 0.0066, P = 4.3e-05, N = 7824) | (0.22, -0.019, P = 0.75, N = 859) |
rs4789359(T)/17:74820027 | intergenic | (0.76, 0.0065, P = 2.1e-05, N = 7824) | (0.85, 0.046, P = 0.49, N = 859) |
rs3786284(A)/18:12010646* | IMPA2 | (0.15, 0.0077, P = 2e-06, N = 7824) | (0.12, 0.1, P = 0.16, N = 859) |
rs11663451(T)/18:2636605* | intergenic | (0.19, 0.25, P = 2.1e-06, N = 1955) | (0.47, 0.0016, P = 0.97, N = 859) |
rs1600674(A)/18:49450206 | intergenic | (0.83, 0.18, P = 1.5e-06, N = 1955) | (0.59, -0.08, P = 0.11, N = 859) |
rs7231686(C)/18:56737737* | OACYLP | (0.44, -0.2, P = 9.4e-07, N = 1955) | (0.42, 0.0099, P = 0.84, N = 859) |
rs12964226(T)/18:70957863* | intergenic | (0.21, -0.18, P = 5.7e-06, N = 1955) | (0.24, 0.08, P = 0.16, N = 859) |
rs2032334(A)/18:71191392 | intergenic | (0.79, -0.0068, P = 1.2e-05, N = 7824) | (0.71, 0.063, P = 0.24, N = 859) |
rs6506578(A)/18:8375039 | PTPRM | (0.017, -0.039, P = 3.9e-05, N = 7824) | (0.064, 0.12, P = 0.22, N = 859) |
rs2158004(A)/19:19033089 | DDX49 | (0.14, -0.0077, P = 1.3e-05, N = 7824) | (0.42, 0.079, P = 0.11, N = 859) |
rs321941(A)/19:52860348* | ZNF610 | (0.16, -0.011, P = 4e-05, N = 7824) | (0.48, -0.0038, P = 0.94, N = 859) |
rs7573335(T)/2:11127705* | intergenic | (0.89, -0.0088, P = 4.8e-05, N = 7824) | (0.76, -0.011, P = 0.85, N = 859) |
rs4538138(T)/2:147285915 | intergenic | (0.19, 0.0071, P = 6.1e-06, N = 7824) | (0.45, 0.02, P = 0.69, N = 859) |
rs34658429(C)/2:16597553 | AC010880.1 | (0.68, -0.14, P = 1.6e-06, N = 1955) | (0.24, -0.057, P = 0.32, N = 859) |
rs715(T)/2:211543055* | CPS1 | (0.71, 0.008, P = 9.1e-08, N = 7824) | (0.81, -0.061, P = 0.33, N = 859) |
rs16865057(A)/2:224529849* | intergenic | (0.97, -0.015, P = 3.8e-05, N = 7824) | (0.63, -0.13, P = 0.0065, N = 859) |
rs10194073(A)/2:38117987* | intergenic | (0.79, -0.007, P = 6.3e-06, N = 7824) | (0.68, 0.075, P = 0.15, N = 859) |
rs12105001(A)/2:44382375* | RNU6-566P | (0.049, -0.013, P = 7.5e-06, N = 7824) | (0.029, -0.22, P = 0.11, N = 859) |
rs4293599(C)/2:48944744 | LHCGR | (0.18, 0.0071, P = 5.9e-06, N = 7824) | (0.11, -0.006, P = 0.94, N = 859) |
rs7574038(C)/2:5276851 | intergenic | (0.077, 0.33, P = 5.3e-06, N = 1955) | (0.2, 0.13, P = 0.037, N = 859) |
rs6716379(C)/2:6896086 | LINC00487 | (0.15, 0.22, P = 4.7e-06, N = 1955) | (0.16, 0.013, P = 0.84, N = 859) |
rs6546697(T)/2:71707208 | DYSF | (0.16, 0.0074, P = 1.3e-05, N = 7824) | (0.27, 0.075, P = 0.18, N = 859) |
rs3856464(A)/2:9825974 | RP11-521D12.2 | (0.34, 0.18, P = 8e-06, N = 1955) | (0.3, 0.032, P = 0.54, N = 859) |
rs6035707(A)/20:20822149* | intergenic | (0.91, 0.0097, P = 1.1e-05, N = 7824) | (0.84, 0.034, P = 0.6, N = 859) |
rs2072241(A)/20:52561372 | BCAS1 | (0.78, 0.0067, P = 1.4e-05, N = 7824) | (0.85, -0.0091, P = 0.89, N = 859) |
rs2824226(A)/21:18457828 | intergenic | (0.82, 0.0074, P = 3.2e-06, N = 7824) | (0.81, 0.011, P = 0.85, N = 859) |
rs2833296(A)/21:32509845 | TIAM1 | (0.85, -0.0071, P = 1.1e-05, N = 7824) | (0.5, -0.023, P = 0.63, N = 859) |
rs2268241(A)/21:34781050 | IFNGR2 | (0.14, -0.007, P = 3.3e-05, N = 7824) | (0.35, 0.079, P = 0.11, N = 859) |
rs2293370(A)/3:119219934* | TIMMDC1 | (0.19, 0.0064, P = 4.2e-05, N = 7824) | (0.2, 0.014, P = 0.81, N = 859) |
rs2049502(A)/3:119254385* | CD80 | (0.83, -0.0065, P = 4.1e-05, N = 7824) | (0.88, -0.016, P = 0.82, N = 859) |
rs7645964(A)/3:168709924 | intergenic | (0.01, -0.79, P = 3.5e-06, N = 1955) | (0.12, 0.25, P = 0.00044, N = 859) |
rs12485568(G)/3:26669772 | LRRC3B | (0.54, 0.14, P = 9.1e-06, N = 1955) | (0.38, -0.023, P = 0.64, N = 859) |
rs555638682(CGGCCG)/3:47517573 | SCAP | (0.013, -0.64, P = 8.2e-06, N = 1955) | (0.019, -0.12, P = 0.5, N = 859) |
rs71308083(A)/3:55170650 | intergenic | (0.053, -0.42, P = 1.2e-06, N = 1955) | (0.016, 0.14, P = 0.45, N = 859) |
rs1403072(T)/3:70373502* | intergenic | (0.77, 0.17, P = 8.5e-06, N = 1955) | (0.66, -0.023, P = 0.65, N = 859) |
rs11930490(A)/4:131803692* | RP11-401I19.1 | (0.8, -0.0076, P = 1.5e-06, N = 7824) | (0.79, -0.062, P = 0.29, N = 859) |
rs2867675(A)/4:14214505 | RP11-669M16.1 | (0.044, -0.39, P = 9.1e-06, N = 1955) | (0.012, 0.032, P = 0.88, N = 859) |
rs7687295(A)/4:182067936 | LINC00290 | (0.025, 0.021, P = 4.3e-06, N = 7824) | (0.21, -0.082, P = 0.16, N = 859) |
rs16885645(A)/4:31678993 | intergenic | (0.055, 0.011, P = 4.7e-05, N = 7824) | (0.14, -0.032, P = 0.64, N = 859) |
rs9761879(A)/4:43860178 | intergenic | (0.77, 0.23, P = 6.3e-06, N = 1955) | (0.55, 0.067, P = 0.17, N = 859) |
rs12509841(T)/4:46578339 | intergenic | (0.15, -0.0067, P = 3.1e-05, N = 7824) | (0.15, 0.0058, P = 0.93, N = 859) |
rs959160(C)/4:47288955* | GABRB1 | (0.8, -0.0069, P = 1.1e-05, N = 7824) | (0.97, 0.026, P = 0.87, N = 859) |
rs2136209(A)/5:115384247* | ARL14EPL | (0.85, -0.0068, P = 2.2e-05, N = 7824) | (0.77, -0.04, P = 0.48, N = 859) |
rs17140120(A)/5:115892364 | SEMA6A | (0.16, 0.007, P = 1.1e-05, N = 7824) | (0.04, 0.1, P = 0.39, N = 859) |
rs3798102(T)/5:132605601 | FSTL4 | (0.97, -0.025, P = 3.8e-05, N = 7824) | (0.38, 0.076, P = 0.12, N = 859) |
rs4487482(A)/5:135201771* | SLC25A48 | (0.8, 0.0081, P = 1.8e-07, N = 7824) | (0.9, 0.0042, P = 0.96, N = 859) |
rs1573824(A)/5:170269857 | intergenic | (0.17, -0.0067, P = 2.4e-05, N = 7824) | (0.3, 0.025, P = 0.63, N = 859) |
rs224947(C)/5:81712715 | intergenic | (0.28, -0.0059, P = 4.8e-05, N = 7824) | (0.25, 0.054, P = 0.34, N = 859) |
rs111326958(T)/6:105755606 | PREP | (0.051, -0.36, P = 5.9e-06, N = 1955) | (0.059, 0.033, P = 0.75, N = 859) |
rs983669(T)/6:127122998* | intergenic | (0.55, 0.0063, P = 1.8e-05, N = 7824) | (0.64, -0.008, P = 0.87, N = 859) |
rs9321388(A)/6:133384863* | intergenic | (0.18, -0.0072, P = 7.6e-06, N = 7824) | (0.74, 0.045, P = 0.4, N = 859) |
rs17788268(T)/6:169477819 | intergenic | (0.2, 0.0066, P = 2.1e-05, N = 7824) | (0.042, -0.059, P = 0.63, N = 859) |
rs303000(A)/6:25057499 | RP3-425P12.1 | (0.17, 0.0069, P = 1.3e-05, N = 7824) | (0.081, 0.096, P = 0.29, N = 859) |
rs7745768(T)/6:29314964* | intergenic | (0.14, -0.0069, P = 3.3e-05, N = 7824) | (0.16, 0.027, P = 0.68, N = 859) |
rs2485074(A)/6:75350666 | RP11-554D15.1 | (0.094, 0.0096, P = 1.3e-05, N = 7824) | (0.019, 0.03, P = 0.87, N = 859) |
rs2299554(T)/7:126857154* | GRM8 | (0.96, 0.015, P = 3.6e-05, N = 7824) | (0.91, 0.018, P = 0.83, N = 859) |
rs2080224(A)/7:19528604* | AC007091.1 | (0.93, -0.011, P = 2e-06, N = 7824) | (0.68, 0.012, P = 0.81, N = 859) |
rs156282(G)/7:24200098* | intergenic | (0.37, 0.2, P = 1.8e-06, N = 1955) | (0.67, -0.047, P = 0.36, N = 859) |
rs2254363(A)/7:36122030* | PP13004 | (0.14, 0.0076, P = 1.1e-05, N = 7824) | (0.41, 0.032, P = 0.5, N = 859) |
rs2371208(T)/7:82337859* | intergenic | (0.22, -0.0062, P = 3.9e-05, N = 7824) | (0.49, -0.001, P = 0.98, N = 859) |
rs4262299(A)/8:108342263 | ANGPT1 | (0.87, 0.0072, P = 1.5e-05, N = 7824) | (0.93, -0.04, P = 0.66, N = 859) |
rs9694615(T)/8:21219361* | intergenic | (0.72, 0.0063, P = 3e-05, N = 7824) | (0.95, -0.067, P = 0.56, N = 859) |
rs4242454(A)/8:50672477* | intergenic | (0.14, 0.0077, P = 3.2e-06, N = 7824) | (0.23, 0.14, P = 0.013, N = 859) |
rs11791084(A)/9:138245834 | RP11-555H7.2 | (0.17, -0.0068, P = 3e-05, N = 7824) | (0.15, 0.046, P = 0.49, N = 859) |
rs7860932(A)/9:16786898* | BNC2 | (0.92, -0.0098, P = 1.5e-05, N = 7824) | (0.85, -0.00075, P = 0.99, N = 859) |
rs10963078(T)/9:17394225 | CNTLN | (0.3, 0.009, P = 2.7e-05, N = 7824) | (0.16, 0.0074, P = 0.91, N = 859) |
rs2891282(C)/9:26227745* | intergenic | (0.85, -0.0067, P = 2.8e-05, N = 7824) | (0.74, -0.04, P = 0.46, N = 859) |
rs12551252(T)/9:98438329 | RP11-180I4.2 | (0.075, -0.01, P = 1.5e-05, N = 7824) | (0.035, 0.064, P = 0.63, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 102 | -0.096 (-0.19- -0.0058) P=0.037 | 6.3 | 32 | 8.36 (0- 48.8) | NA | NA | 0.0053 P=0.45 |
MR-Egger | 102 | -0.11 (-0.22- -0.011) P=0.032 | 6.3 | 32 | 8.36 (0- 48.8) | 98 | 0.55 | 0.0053 P=0.45 |
Weighted median | 102 | -0.053 (-0.22- 0.12) P=0.54 | 6.3 | 32 | 8.36 (0- 48.8) | NA | NA | 0.0053 P=0.45 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.1 | 0.05 | -2.09 | 0.04 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 50 | -0.1 (-0.23- 0.016) P=0.088 | 7.8 | 20 | 17.8 (0- 39.8) | NA | NA | -0.0077 P=0.49 |
MR-Egger | 50 | -0.08 (-0.22- 0.059) P=0.26 | 7.8 | 20 | 17.8 (0- 39.8) | 50 | 0.38 | -0.0077 P=0.49 |
Weighted median | 50 | -0.085 (-0.32- 0.15) P=0.47 | 7.8 | 20 | 17.8 (0- 39.8) | NA | NA | -0.0077 P=0.49 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.1 | 0.06 | -1.71 | 0.09 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Citric acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs2392041(A)/1:100056225 | intergenic | (0.66, -0.0075, P = 3.5e-05, N = 7824) | (0.46, -0.013, P = 0.79, N = 859) |
rs3125672(T)/1:107822255* | NTNG1 | (0.3, -0.0076, P = 2.7e-05, N = 7824) | (0.1, -0.11, P = 0.15, N = 859) |
rs6604130(A)/1:109388656* | AKNAD1 | (0.19, 0.15, P = 3.9e-06, N = 1958) | (0.52, -0.014, P = 0.76, N = 859) |
rs17037696(T)/1:12243274 | TNFRSF1B | (0.26, -0.011, P = 1.2e-05, N = 7824) | (0.19, 0.062, P = 0.31, N = 859) |
rs12136772(A)/1:19901804 | intergenic | (0.92, -0.014, P = 4e-05, N = 7824) | (0.93, -0.13, P = 0.18, N = 859) |
rs6678076(A)/1:199233200* | RP11-382E9.1 | (0.034, -0.025, P = 1.1e-06, N = 7824) | (0.24, -0.0069, P = 0.91, N = 859) |
rs6655965(A)/1:203680492* | ATP2B4 | (0.54, 0.0074, P = 3.6e-05, N = 7824) | (0.35, 0.0073, P = 0.88, N = 859) |
rs11120725(A)/1:216206768 | USH2A | (0.46, -0.018, P = 4.6e-06, N = 7824) | (0.34, 0.025, P = 0.63, N = 859) |
rs265126(A)/1:217620203* | GPATCH2 | (0.17, 0.011, P = 2.6e-05, N = 7824) | (0.35, 0.081, P = 0.11, N = 859) |
rs2813960(T)/1:227402299 | CDC42BPA | (0.67, -0.018, P = 2.5e-05, N = 7824) | (0.64, 0.016, P = 0.76, N = 859) |
rs11584333(A)/1:230529619* | PGBD5 | (0.32, -0.15, P = 5e-06, N = 1958) | (0.09, 0.081, P = 0.34, N = 859) |
rs614612(T)/1:23422692* | LUZP1 | (0.16, -0.022, P = 1.7e-05, N = 7824) | (0.19, 0.12, P = 0.051, N = 859) |
rs12748947(T)/1:239463528 | intergenic | (0.68, -0.0074, P = 4.7e-05, N = 7824) | (0.92, 0.068, P = 0.44, N = 859) |
rs260969(T)/1:39551621 | MACF1 | (0.28, -0.0074, P = 4.8e-05, N = 7824) | (0.14, 0.068, P = 0.34, N = 859) |
rs7512821(A)/1:62774469* | KANK4 | (0.46, -0.0074, P = 3.2e-05, N = 7824) | (0.69, -0.061, P = 0.25, N = 859) |
rs11492774(C)/10:109637548 | RP11-215N21.1 | (0.15, -0.24, P = 6.8e-06, N = 1958) | (0.14, 0.025, P = 0.73, N = 859) |
rs10787308(A)/10:112908968* | intergenic | (0.27, -0.009, P = 6e-07, N = 7824) | (0.26, 0.016, P = 0.77, N = 859) |
rs4880317(A)/10:133880163 | intergenic | (0.32, -0.0074, P = 4.6e-05, N = 7824) | (0.13, -0.015, P = 0.83, N = 859) |
rs3750870(T)/10:24548718* | KIAA1217 | (0.36, 0.0077, P = 1.9e-05, N = 7824) | (0.14, 0.1, P = 0.14, N = 859) |
rs4589188(A)/10:5567914 | CALML3 | (0.28, 0.012, P = 3.3e-06, N = 7824) | (0.29, 0.0042, P = 0.94, N = 859) |
rs7919076(T)/10:68328936 | CTNNA3 | (0.34, -0.0081, P = 7.8e-06, N = 7824) | (0.22, 0.051, P = 0.38, N = 859) |
rs2057440(A)/10:77758013 | C10orf11 | (0.72, 0.0079, P = 1.3e-05, N = 7824) | (0.39, -0.053, P = 0.27, N = 859) |
rs10824358(T)/10:77827397 | C10orf11 | (0.55, -0.0072, P = 4.8e-05, N = 7824) | (0.75, -0.088, P = 0.11, N = 859) |
rs4918082(A)/10:95859929* | PLCE1 | (0.72, -0.0079, P = 1.3e-05, N = 7824) | (0.46, 0.036, P = 0.46, N = 859) |
rs3193970(T)/10:97072008* | SORBS1 | (0.58, 0.0081, P = 6.1e-06, N = 7824) | (0.63, 0.051, P = 0.31, N = 859) |
rs1998911(T)/10:97266538* | SORBS1 | (0.29, 0.0075, P = 4.4e-05, N = 7824) | (0.58, -0.0063, P = 0.9, N = 859) |
rs527936(C)/11:100279586 | intergenic | (0.88, 0.011, P = 4.5e-05, N = 7824) | (0.79, -0.057, P = 0.32, N = 859) |
rs7105815(A)/11:12309693 | MICALCL | (0.3, 0.0091, P = 4.9e-07, N = 7824) | (0.38, 0.00062, P = 0.99, N = 859) |
rs7950818(T)/11:124385456* | OR8B10P | (0.12, -0.011, P = 2.1e-05, N = 7824) | (0.19, -0.045, P = 0.47, N = 859) |
rs2878806(T)/11:17713507* | RP11-358H18.3 | (0.75, -0.0078, P = 2e-05, N = 7824) | (0.17, 0.15, P = 0.02, N = 859) |
rs7109624(A)/11:20836004 | NELL1 | (0.018, -0.031, P = 4.5e-05, N = 7824) | (0.036, 0.043, P = 0.74, N = 859) |
rs2237897(T)/11:2858546 | KCNQ1 | (0.058, -0.038, P = 1e-05, N = 7824) | (0.086, -0.074, P = 0.39, N = 859) |
rs13966(T)/11:61664992* | RAB3IL1 | (0.47, 0.0082, P = 1e-05, N = 7824) | (0.54, 0.079, P = 0.11, N = 859) |
rs12797573(T)/11:77255306* | CLNS1A | (0.69, -0.0076, P = 2.6e-05, N = 7824) | (0.87, -0.053, P = 0.45, N = 859) |
rs12222578(T)/11:81696265 | RP11-179A16.1 | (0.29, -0.0073, P = 4.6e-05, N = 7824) | (0.11, 0.082, P = 0.29, N = 859) |
rs12803308(A)/11:96180609* | JRKL-AS1 | (0.68, -0.0081, P = 6e-06, N = 7824) | (0.82, 0.023, P = 0.71, N = 859) |
rs1169072(A)/12:122401501* | WDR66 | (0.42, 0.0078, P = 1.2e-05, N = 7824) | (0.16, 0.011, P = 0.87, N = 859) |
rs79424089(G)/12:21485527 | SLCO1A2 | (0.061, 0.23, P = 2.5e-06, N = 1958) | (0.013, -0.11, P = 0.61, N = 859) |
rs2080125(T)/12:7727544* | intergenic | (0.27, 0.0074, P = 4.8e-05, N = 7824) | (0.8, 0.079, P = 0.18, N = 859) |
rs932829(A)/13:40828542 | intergenic | (0.47, -0.0078, P = 1.3e-05, N = 7824) | (0.41, -0.21, P = 2.9e-05, N = 859) |
rs35354791(TG)/13:46419404 | SIAH3 | (0.45, 0.18, P = 8.7e-06, N = 1958) | (0.82, -0.0025, P = 0.97, N = 859) |
rs1953192(T)/14:40297539* | intergenic | (0.42, 0.0077, P = 1.3e-05, N = 7824) | (0.1, 0.0087, P = 0.91, N = 859) |
rs2236299(A)/14:55255335 | SAMD4A | (0.31, 0.0087, P = 1.7e-06, N = 7824) | (0.14, 0.051, P = 0.46, N = 859) |
rs8017368(A)/14:63527183* | KCNH5 | (0.65, -0.0083, P = 3.9e-06, N = 7824) | (0.52, 0.062, P = 0.2, N = 859) |
rs10147304(A)/14:79079176 | NRXN3 | (0.052, 0.018, P = 1.6e-05, N = 7824) | (0.2, -0.011, P = 0.85, N = 859) |
rs74686496(C)/14:98384933 | intergenic | (0.12, 0.26, P = 9.5e-06, N = 1958) | (0.012, -0.17, P = 0.41, N = 859) |
rs8025575(C)/15:26788083* | GABRB3 | (0.46, -0.0073, P = 4.6e-05, N = 7824) | (0.59, -0.03, P = 0.54, N = 859) |
rs4779800(A)/15:29411326* | APBA2 | (0.88, -0.012, P = 6.1e-06, N = 7824) | (0.54, -0.021, P = 0.66, N = 859) |
rs8025554(C)/15:32418417 | CHRNA7 | (0.52, -0.008, P = 6.6e-06, N = 7824) | (0.34, -0.091, P = 0.076, N = 859) |
rs1530219(A)/15:39602380* | RP11-462P6.1 | (0.48, -0.0078, P = 9.9e-06, N = 7824) | (0.16, -0.038, P = 0.56, N = 859) |
rs3784283(A)/15:41867782 | TYRO3 | (0.61, 0.0076, P = 2.1e-05, N = 7824) | (0.5, -0.0078, P = 0.87, N = 859) |
rs7179219(A)/15:42324479 | PLA2G4E | (0.15, -0.011, P = 2.3e-05, N = 7824) | (0.26, 0.077, P = 0.15, N = 859) |
rs2727091(T)/15:66124227* | RAB11A | (0.12, -0.012, P = 1.4e-05, N = 7824) | (0.12, 0.024, P = 0.75, N = 859) |
rs11862304(A)/16:17191196 | XYLT1 | (0.28, 0.0077, P = 2e-05, N = 7824) | (0.42, 0.084, P = 0.083, N = 859) |
rs2239337(C)/16:22911553 | HS3ST2 | (0.036, 0.023, P = 7.5e-06, N = 7824) | (0.29, 0.02, P = 0.7, N = 859) |
rs6502405(A)/17:14834158 | intergenic | (0.39, -0.0076, P = 2.3e-05, N = 7824) | (0.14, -0.045, P = 0.51, N = 859) |
rs170149(A)/17:6595930 | SLC13A5 | (0.074, 0.026, P = 1.4e-13, N = 7824) | (0.25, -0.048, P = 0.37, N = 859) |
rs218682(T)/17:6614288 | SLC13A5 | (0.4, 0.0093, P = 3e-07, N = 7824) | (0.78, -0.083, P = 0.16, N = 859) |
rs4999864(C)/17:66786460 | RP11-118B18.2 | (0.93, 0.018, P = 4.8e-07, N = 7824) | (0.79, 0.026, P = 0.66, N = 859) |
rs1509123(T)/17:6683878 | FBXO39 | (0.048, -0.025, P = 5.2e-09, N = 7824) | (0.04, 0.038, P = 0.76, N = 859) |
rs12103645(T)/17:6721216* | TEKT1 | (0.086, -0.018, P = 6.6e-08, N = 7824) | (0.18, -0.04, P = 0.51, N = 859) |
rs9901983(A)/17:71816764* | LINC00469 | (0.021, 0.062, P = 4.9e-05, N = 7824) | (0.42, 0.0065, P = 0.89, N = 859) |
rs6507399(A)/18:38732045 | intergenic | (0.67, -0.01, P = 1.7e-08, N = 7824) | (0.79, -0.025, P = 0.67, N = 859) |
rs2552494(A)/18:38751633* | intergenic | (0.19, 0.011, P = 3.4e-05, N = 7824) | (0.41, -0.0041, P = 0.94, N = 859) |
rs1792712(A)/18:53834119 | CTD-2008L17.2 | (0.41, 0.0075, P = 2.7e-05, N = 7824) | (0.71, 0.019, P = 0.71, N = 859) |
rs17208063(T)/18:67557428 | CD226 | (0.076, 0.2, P = 9.1e-06, N = 1958) | (0.074, 0.044, P = 0.62, N = 859) |
rs36013690(CA)/18:74632507 | ZNF236 | (0.079, -0.23, P = 9.1e-06, N = 1958) | (0.8, -0.055, P = 0.36, N = 859) |
rs889128(T)/19:10131693 | RDH8 | (0.67, 0.0082, P = 6.8e-06, N = 7824) | (0.39, -0.048, P = 0.33, N = 859) |
rs279220(A)/19:11990258 | ZNF439 | (0.33, 0.18, P = 9.4e-06, N = 1958) | (0.44, -0.017, P = 0.72, N = 859) |
rs588973(A)/19:50736956* | MYH14 | (0.65, 0.009, P = 6.8e-06, N = 7824) | (0.58, 0.11, P = 0.024, N = 859) |
rs2370136(T)/19:57619241* | intergenic | (0.49, -0.0086, P = 1.2e-06, N = 7824) | (0.73, 0.0081, P = 0.88, N = 859) |
rs6725836(T)/2:107862691* | intergenic | (0.7, -0.0077, P = 2e-05, N = 7824) | (0.34, -0.00076, P = 0.99, N = 859) |
rs11693199(T)/2:119732042 | MARCO | (0.59, -0.0079, P = 1e-05, N = 7824) | (0.92, 0.034, P = 0.7, N = 859) |
rs3749114(A)/2:160832996* | PLA2R1 | (0.46, 0.0078, P = 1.3e-05, N = 7824) | (0.9, -0.026, P = 0.74, N = 859) |
rs17614686(C)/2:167808253* | XIRP2 | (0.88, 0.012, P = 1.4e-05, N = 7824) | (0.95, 0.12, P = 0.29, N = 859) |
rs6747034(A)/2:174238868 | intergenic | (0.48, -0.0074, P = 3e-05, N = 7824) | (0.76, -0.039, P = 0.48, N = 859) |
rs4470337(A)/2:228293381 | intergenic | (0.42, -0.0074, P = 3.6e-05, N = 7824) | (0.48, -0.0017, P = 0.97, N = 859) |
rs76848421(T)/2:240661614 | RP11-315F22.1 | (0.017, 0.66, P = 4.3e-06, N = 1958) | (0.13, 0.078, P = 0.28, N = 859) |
rs4274563(T)/2:30157386 | intergenic | (0.38, -0.0075, P = 3.3e-05, N = 7824) | (0.54, 0.021, P = 0.66, N = 859) |
rs7584253(A)/2:48927246* | LHCGR | (0.7, 0.0083, P = 5e-06, N = 7824) | (0.74, 0.062, P = 0.26, N = 859) |
rs193031(C)/2:64260458 | intergenic | (0.18, 0.011, P = 1.2e-05, N = 7824) | (0.43, -0.069, P = 0.16, N = 859) |
rs939136(C)/2:66677531 | MEIS1 | (0.67, -0.0076, P = 2.3e-05, N = 7824) | (0.48, 0.054, P = 0.26, N = 859) |
rs6077792(T)/20:1096116 | PSMF1 | (0.3, -0.0085, P = 2.8e-06, N = 7824) | (0.26, -0.0064, P = 0.91, N = 859) |
rs6121327(A)/20:30643515 | HCK | (0.012, 0.68, P = 4e-06, N = 1958) | (0.059, 0.065, P = 0.52, N = 859) |
rs1325760(T)/20:46740070 | intergenic | (0.74, 0.0077, P = 1.8e-05, N = 7824) | (0.22, 0.074, P = 0.21, N = 859) |
rs12625828(T)/20:48844585 | intergenic | (0.34, 0.0086, P = 2.1e-06, N = 7824) | (0.18, 0.096, P = 0.13, N = 859) |
rs11905229(C)/20:55151100 | RP5-843L14.1 | (0.43, 0.013, P = 5.8e-06, N = 7824) | (0.28, 0.032, P = 0.55, N = 859) |
rs6133537(A)/20:8039501 | intergenic | (0.061, 0.018, P = 1.8e-05, N = 7824) | (0.093, -0.051, P = 0.55, N = 859) |
rs2836710(T)/21:40218782 | AP001042.1 | (0.63, 0.0077, P = 1.7e-05, N = 7824) | (0.75, 0.0025, P = 0.96, N = 859) |
rs1125471(A)/22:17656724 | CECR1 | (0.29, -0.0085, P = 4.5e-06, N = 7824) | (0.19, -0.074, P = 0.22, N = 859) |
rs807670(A)/22:19154608* | AC004463.6 | (0.42, 0.011, P = 6.8e-10, N = 7824) | (0.44, -0.033, P = 0.49, N = 859) |
rs723414(A)/22:19185736* | CLTCL1 | (0.56, -0.0072, P = 4.6e-05, N = 7824) | (0.79, 0.042, P = 0.48, N = 859) |
rs361787(T)/22:19263698* | CLTCL1 | (0.61, -0.0091, P = 3.8e-07, N = 7824) | (0.75, 0.0011, P = 0.98, N = 859) |
rs738809(A)/22:24405492* | CABIN1 | (0.72, 0.0077, P = 2.1e-05, N = 7824) | (0.7, -0.068, P = 0.21, N = 859) |
rs9624921(T)/22:26250248* | MYO18B | (0.3, 0.0074, P = 4.5e-05, N = 7824) | (0.14, 0.037, P = 0.6, N = 859) |
rs2413380(T)/22:36519040* | intergenic | (0.6, -0.0076, P = 2.1e-05, N = 7824) | (0.86, -0.035, P = 0.6, N = 859) |
rs133064(A)/22:41071731 | MCHR1 | (0.38, -0.0073, P = 4.6e-05, N = 7824) | (0.33, 0.041, P = 0.42, N = 859) |
rs11706160(G)/3:1461452 | intergenic | (0.27, 0.2, P = 6.5e-06, N = 1958) | (0.061, -0.0047, P = 0.96, N = 859) |
rs11276214(TTTACTACAATTTAC)/3:183088540 | MCF2L2 | (0.062, -0.24, P = 2.1e-06, N = 1958) | (0.55, -0.023, P = 0.62, N = 859) |
rs7623540(A)/3:188489540 | LPP | (0.72, -0.0085, P = 3.4e-06, N = 7824) | (0.45, -0.019, P = 0.69, N = 859) |
rs10514735(A)/3:85798950* | CADM2 | (0.98, 0.035, P = 6.5e-06, N = 7824) | (0.97, 0.23, P = 0.092, N = 859) |
rs17034684(T)/4:105511810 | AC004053.1 | (0.29, 0.0081, P = 7.9e-06, N = 7824) | (0.26, -0.038, P = 0.49, N = 859) |
rs697365(A)/4:121377644 | intergenic | (0.34, -0.0075, P = 3e-05, N = 7824) | (0.12, 0.032, P = 0.67, N = 859) |
rs12499121(T)/4:12297535* | intergenic | (0.79, 0.011, P = 1.5e-05, N = 7824) | (0.73, -0.049, P = 0.36, N = 859) |
rs13151462(A)/4:12670968* | intergenic | (0.58, 0.0081, P = 5.1e-06, N = 7824) | (0.39, -0.0099, P = 0.84, N = 859) |
rs1033175(A)/4:128532930* | intergenic | (0.57, 0.0076, P = 2.1e-05, N = 7824) | (0.43, -0.00028, P = 1, N = 859) |
rs28446988(T)/4:140140965* | intergenic | (0.24, 0.12, P = 7.9e-06, N = 1958) | (0.5, -0.031, P = 0.51, N = 859) |
rs13130021(T)/4:2277763* | ZFYVE28 | (0.43, -0.0089, P = 1.4e-06, N = 7824) | (0.18, 0.1, P = 0.1, N = 859) |
rs13128174(C)/4:37739459 | intergenic | (0.16, -0.21, P = 9.9e-06, N = 1958) | (0.065, 0.053, P = 0.59, N = 859) |
rs4861079(A)/4:40371287 | intergenic | (0.86, -0.011, P = 1.7e-05, N = 7824) | (0.43, 0.011, P = 0.81, N = 859) |
rs1404373(T)/4:58204024 | intergenic | (0.65, -0.0084, P = 2.9e-06, N = 7824) | (0.95, 0.12, P = 0.28, N = 859) |
rs6854172(T)/4:6410288* | PPP2R2C | (0.16, 0.022, P = 2.1e-05, N = 7824) | (0.21, 0.027, P = 0.65, N = 859) |
rs4235093(A)/4:72346252 | SLC4A4 | (0.29, -0.0083, P = 5e-06, N = 7824) | (0.78, 0.039, P = 0.49, N = 859) |
rs13106792(A)/4:80239092 | NAA11 | (0.63, 0.0078, P = 1.4e-05, N = 7824) | (0.68, -0.056, P = 0.28, N = 859) |
rs4693453(A)/4:83448507* | TMEM150C | (0.87, 0.011, P = 2.7e-05, N = 7824) | (0.45, 0.012, P = 0.8, N = 859) |
rs12509601(A)/4:92222755 | CCSER1 | (0.71, -0.15, P = 3.7e-06, N = 1958) | (0.96, -0.1, P = 0.39, N = 859) |
rs1230171(C)/4:99924278* | METAP1 | (0.68, -0.0076, P = 2.8e-05, N = 7824) | (0.85, -0.046, P = 0.5, N = 859) |
rs17595102(C)/4:99986316* | METAP1 | (0.44, -0.0078, P = 1.3e-05, N = 7824) | (0.12, 0.032, P = 0.67, N = 859) |
rs1549924(A)/5:107216209* | FBXL17 | (0.079, -0.015, P = 2e-05, N = 7824) | (0.17, 0.044, P = 0.48, N = 859) |
rs9327706(A)/5:134512608* | C5orf66 | (0.59, 0.0081, P = 5.6e-06, N = 7824) | (0.55, 0.045, P = 0.35, N = 859) |
rs111686785(G)/5:14738965 | ANKH | (0.03, -0.61, P = 1.1e-07, N = 1958) | (0.019, 0.077, P = 0.66, N = 859) |
rs835154(A)/5:14876569* | ANKH | (0.58, -0.011, P = 1.1e-10, N = 7824) | (0.88, 0.092, P = 0.22, N = 859) |
rs1968433(T)/5:155628282 | SGCD | (0.66, 0.0076, P = 2.2e-05, N = 7824) | (0.93, -0.11, P = 0.27, N = 859) |
rs10043015(T)/5:168658371 | SLIT3 | (0.71, 0.0082, P = 5.6e-06, N = 7824) | (0.61, -0.13, P = 0.011, N = 859) |
rs9313504(A)/5:169830698* | CTD-2270F17.1 | (0.99, -0.074, P = 3.4e-05, N = 7824) | (0.8, 0.072, P = 0.23, N = 859) |
rs2731709(T)/5:171788634* | SH3PXD2B | (0.67, -0.0078, P = 1.6e-05, N = 7824) | (0.85, -0.065, P = 0.33, N = 859) |
rs12654113(C)/5:20326490 | CDH18 | (0.47, -0.0077, P = 1.7e-05, N = 7824) | (0.83, -0.042, P = 0.51, N = 859) |
rs7710027(T)/5:55901945* | AC022431.2 | (0.29, 0.0081, P = 9.2e-06, N = 7824) | (0.65, 0.075, P = 0.13, N = 859) |
rs2534835(T)/5:56948443 | intergenic | (0.24, -0.0083, P = 6.2e-06, N = 7824) | (0.081, 0.018, P = 0.83, N = 859) |
rs113693608(TAA)/5:7660900 | ADCY2 | (0.18, 0.23, P = 9.9e-06, N = 1958) | (0.2, 0.027, P = 0.66, N = 859) |
rs10074809(T)/5:95818902 | CTD-2337A12.1 | (0.29, 0.0079, P = 1.3e-05, N = 7824) | (0.047, 0.06, P = 0.6, N = 859) |
rs7734922(T)/5:96745629 | RP11-155G15.2 | (0.92, 0.029, P = 3.2e-05, N = 7824) | (0.79, 0.083, P = 0.16, N = 859) |
rs9387010(T)/6:111705944* | REV3L | (0.065, -0.015, P = 2.9e-05, N = 7824) | (0.053, 0.037, P = 0.73, N = 859) |
rs9372398(T)/6:114833591 | intergenic | (0.55, 0.0081, P = 6.7e-06, N = 7824) | (0.26, -0.058, P = 0.27, N = 859) |
rs768581(T)/6:117277972 | intergenic | (0.19, -0.011, P = 2.7e-05, N = 7824) | (0.26, 0.11, P = 0.046, N = 859) |
rs2224382(A)/6:133611341 | EYA4 | (0.4, -0.01, P = 4.4e-05, N = 7824) | (0.43, 0.051, P = 0.3, N = 859) |
rs9389071(A)/6:133674634* | EYA4 | (0.16, -0.012, P = 5.6e-06, N = 7824) | (0.23, 0.056, P = 0.32, N = 859) |
rs3777804(A)/6:133708746* | EYA4 | (0.87, 0.011, P = 2.2e-05, N = 7824) | (0.71, 0.015, P = 0.78, N = 859) |
rs2143327(T)/6:146616239 | GRM1 | (0.013, 0.039, P = 4.3e-06, N = 7824) | (0.28, -0.0049, P = 0.93, N = 859) |
rs2294784(T)/6:148852391* | SASH1 | (0.86, -0.011, P = 4.9e-05, N = 7824) | (0.76, 0.01, P = 0.85, N = 859) |
rs2880072(A)/6:159825449* | intergenic | (0.39, 0.0072, P = 5e-05, N = 7824) | (0.69, -0.064, P = 0.23, N = 859) |
rs9355391(G)/6:162689005 | PARK2 | (0.18, -0.2, P = 4.2e-06, N = 1958) | (0.62, -0.057, P = 0.24, N = 859) |
rs12213498(T)/6:169753177 | intergenic | (0.14, 0.26, P = 8.4e-06, N = 1958) | (0.016, 0.24, P = 0.21, N = 859) |
rs910616(T)/6:44074976 | intergenic | (0.5, -0.0093, P = 2e-07, N = 7824) | (0.18, -0.025, P = 0.69, N = 859) |
rs4236146(T)/6:56960612 | ZNF451 | (0.19, 0.012, P = 4.7e-05, N = 7824) | (0.48, -0.061, P = 0.2, N = 859) |
rs11243250(T)/6:8364262* | intergenic | (0.36, 0.0073, P = 4.6e-05, N = 7824) | (0.75, -0.0052, P = 0.93, N = 859) |
rs1890954(T)/6:8386802 | intergenic | (0.3, -0.008, P = 9.8e-06, N = 7824) | (0.094, -0.13, P = 0.11, N = 859) |
rs422252(A)/6:89893578 | GABRR1 | (0.48, -0.16, P = 9.5e-06, N = 1958) | (0.54, 0.0024, P = 0.96, N = 859) |
rs2190406(C)/7:108081246 | NRCAM | (0.29, 0.0073, P = 4.6e-05, N = 7824) | (0.52, 0.067, P = 0.16, N = 859) |
rs6467552(T)/7:134390473 | intergenic | (0.5, 0.0078, P = 1.4e-05, N = 7824) | (0.69, -0.13, P = 0.011, N = 859) |
rs2299893(A)/7:139618590* | TBXAS1 | (0.73, -0.0077, P = 3e-05, N = 7824) | (0.35, 0.059, P = 0.24, N = 859) |
rs940697(A)/7:143183203 | EPHA1-AS1 | (0.27, 0.0082, P = 5.7e-06, N = 7824) | (0.36, -0.076, P = 0.13, N = 859) |
rs2717875(T)/7:25222184 | C7orf31 | (0.93, 0.015, P = 1.5e-05, N = 7824) | (0.77, 0.048, P = 0.39, N = 859) |
rs17158507(A)/7:83642711 | SEMA3A | (0.13, -0.011, P = 3.2e-05, N = 7824) | (0.077, -0.069, P = 0.45, N = 859) |
rs2049649(G)/7:94949329 | PON1 | (0.31, -0.14, P = 8.7e-06, N = 1958) | (0.44, -0.014, P = 0.78, N = 859) |
rs6965510(T)/7:95229848* | PDK4 | (0.059, 0.015, P = 3.4e-05, N = 7824) | (0.24, -0.048, P = 0.39, N = 859) |
rs3133577(T)/8:101805542* | intergenic | (0.68, -0.0076, P = 2.3e-05, N = 7824) | (0.53, 0.065, P = 0.18, N = 859) |
rs7012644(T)/8:118736914* | intergenic | (0.25, 0.0077, P = 3.1e-05, N = 7824) | (0.18, 0.023, P = 0.72, N = 859) |
rs7837201(T)/8:133319798 | KCNQ3 | (0.8, -0.011, P = 2.3e-05, N = 7824) | (0.56, 0.066, P = 0.17, N = 859) |
rs2623859(T)/8:68677337 | intergenic | (0.93, 0.29, P = 2.7e-06, N = 1958) | (0.87, 0.0081, P = 0.91, N = 859) |
rs10093959(A)/8:78050644* | intergenic | (0.63, -0.0075, P = 2.7e-05, N = 7824) | (0.37, -0.04, P = 0.42, N = 859) |
rs1380634(A)/8:80237893 | intergenic | (0.74, -0.0083, P = 5.2e-06, N = 7824) | (0.49, 0.023, P = 0.63, N = 859) |
rs7465310(T)/8:80266503 | intergenic | (0.63, -0.008, P = 7.3e-06, N = 7824) | (0.24, -0.038, P = 0.51, N = 859) |
rs17461032(T)/8:81083077 | TPD52 | (0.71, -0.0077, P = 2.6e-05, N = 7824) | (0.78, 0.017, P = 0.77, N = 859) |
rs10818640(A)/9:100997156 | TBC1D2 | (0.27, 0.008, P = 1.3e-05, N = 7824) | (0.17, 0.19, P = 0.0039, N = 859) |
rs10978481(C)/9:109195928 | RP11-308N19.1 | (0.41, 0.0077, P = 1.7e-05, N = 7824) | (0.076, 0.00082, P = 0.99, N = 859) |
rs2093403(T)/9:117611913 | RP11-78H18.2 | (0.88, -0.011, P = 2.8e-05, N = 7824) | (0.88, 0.0035, P = 0.96, N = 859) |
rs2041472(C)/9:125539968* | intergenic | (0.017, 0.031, P = 1e-05, N = 7824) | (0.27, 0.038, P = 0.49, N = 859) |
rs11103845(A)/9:138252603* | intergenic | (0.05, 0.018, P = 2.7e-05, N = 7824) | (0.011, 0.059, P = 0.79, N = 859) |
rs868395(T)/9:85175793* | RP11-15B24.5 | (0.67, 0.01, P = 2e-08, N = 7824) | (0.92, 0.18, P = 0.047, N = 859) |
rs10992722(A)/9:96163761 | intergenic | (0.016, 0.033, P = 2.4e-06, N = 7824) | (0.14, 0.061, P = 0.38, N = 859) |
rs6479486(A)/9:96226164 | FAM120A | (0.98, -0.032, P = 2.7e-06, N = 7824) | (0.94, 0.018, P = 0.86, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 172 | 0.059 (-0.051- 0.17) P=0.29 | 3.3 | 27 | 1.74e-05 (0- 93) | NA | NA | -0.0018 P=0.72 |
MR-Egger | 172 | 0.068 (-0.053- 0.19) P=0.27 | 3.3 | 27 | 1.74e-05 (0- 93) | 177 | 0.35 | -0.0018 P=0.72 |
Weighted median | 172 | 0.097 (-0.054- 0.25) P=0.21 | 3.3 | 27 | 1.74e-05 (0- 93) | NA | NA | -0.0018 P=0.72 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.06 | 0.06 | 1.05 | 0.3 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 101 | 0.078 (-0.039- 0.2) P=0.19 | 5.1 | 25 | 0.0011 (0- 97.4) | NA | NA | -0.0061 P=0.38 |
MR-Egger | 101 | 0.1 (-0.027- 0.23) P=0.12 | 5.1 | 25 | 0.0011 (0- 97.4) | 109 | 0.24 | -0.0061 P=0.38 |
Weighted median | 101 | 0.097 (-0.057- 0.25) P=0.22 | 5.1 | 25 | 0.0011 (0- 97.4) | NA | NA | -0.0061 P=0.38 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.08 | 0.06 | 1.3 | 0.2 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Citrulline (Shin et al/Long et al) | eGFR (CSSCD) |
rs6678521(T)/1:107387839 | intergenic | (0.37, -0.007, P = 4.9e-05, N = 7824) | (0.32, -0.062, P = 0.24, N = 859) |
rs10858075(T)/1:115877522* | NGF | (0.41, -0.0091, P = 1.1e-07, N = 7824) | (0.52, -0.04, P = 0.41, N = 859) |
rs2486079(C)/1:116527617 | SLC22A15 | (0.7, -0.0071, P = 4.1e-05, N = 7824) | (0.53, -0.067, P = 0.17, N = 859) |
rs310101(A)/1:153040570* | SPRR2B | (0.96, 0.037, P = 3.9e-06, N = 7824) | (0.65, 0.1, P = 0.046, N = 859) |
rs72725073(T)/1:182552466 | RNASEL | (0.2, -0.18, P = 4.2e-06, N = 1955) | (0.041, 0.0086, P = 0.94, N = 859) |
rs7542381(A)/1:184635055 | intergenic | (0.01, 0.068, P = 2.6e-05, N = 7824) | (0.1, 0.013, P = 0.87, N = 859) |
rs1060060(T)/1:200143281* | NR5A2 | (0.3, -0.0073, P = 2.9e-05, N = 7824) | (0.36, 0.073, P = 0.13, N = 859) |
rs11119951(T)/1:212665790* | intergenic | (0.12, 0.012, P = 4.4e-06, N = 7824) | (0.02, 0.15, P = 0.39, N = 859) |
rs2799085(A)/1:218552455 | TGFB2 | (0.32, -0.012, P = 2.3e-05, N = 7824) | (0.38, 0.049, P = 0.33, N = 859) |
rs2247175(T)/1:97001894 | intergenic | (0.84, 0.24, P = 2.8e-06, N = 1955) | (0.96, -0.082, P = 0.51, N = 859) |
rs7099144(A)/10:101350970 | intergenic | (0.61, -0.0075, P = 1.2e-05, N = 7824) | (0.59, -0.015, P = 0.76, N = 859) |
rs430152(A)/10:119331597* | CTA-109P11.1 | (0.32, -0.007, P = 4.9e-05, N = 7824) | (0.69, -0.0088, P = 0.87, N = 859) |
rs7910118(A)/10:129958947 | intergenic | (0.12, -0.011, P = 1.3e-05, N = 7824) | (0.15, -0.05, P = 0.44, N = 859) |
rs3814664(C)/10:13740456 | FRMD4A | (0.69, -0.0071, P = 4.7e-05, N = 7824) | (0.51, 0.0095, P = 0.85, N = 859) |
rs10906682(T)/10:14500774 | FRMD4A | (0.87, 0.011, P = 4.1e-05, N = 7824) | (0.66, 0.0041, P = 0.94, N = 859) |
rs224768(A)/10:34281908 | intergenic | (0.29, 0.11, P = 4.6e-06, N = 1955) | (0.53, -0.055, P = 0.26, N = 859) |
rs4881230(G)/10:3939916 | intergenic | (0.74, -0.19, P = 3.1e-06, N = 1955) | (0.53, 0.02, P = 0.69, N = 859) |
rs12266210(T)/10:55188322* | intergenic | (0.3, -0.0074, P = 3.3e-05, N = 7824) | (0.33, 0.0024, P = 0.96, N = 859) |
rs2704467(A)/10:71530680* | intergenic | (0.28, -0.0074, P = 4.2e-05, N = 7824) | (0.28, -0.022, P = 0.69, N = 859) |
rs4244950(T)/10:86020700 | RGR | (0.64, -0.0072, P = 3.3e-05, N = 7824) | (0.27, 0.059, P = 0.3, N = 859) |
rs957646(T)/10:92064322 | intergenic | (0.97, 0.025, P = 3.6e-05, N = 7824) | (0.78, -0.12, P = 0.036, N = 859) |
rs4075311(T)/10:97574655 | ENTPD1 | (0.56, -0.0099, P = 5.5e-09, N = 7824) | (0.66, -0.034, P = 0.51, N = 859) |
rs1935815(A)/10:97631492 | ENTPD1 | (0.35, 0.011, P = 1.5e-10, N = 7824) | (0.14, -0.0081, P = 0.91, N = 859) |
rs10509698(A)/10:97792352 | CC2D2B | (0.076, 0.014, P = 2.4e-05, N = 7824) | (0.046, 0.3, P = 0.0091, N = 859) |
rs17030423(A)/12:101072465* | intergenic | (0.34, 0.0076, P = 1.2e-05, N = 7824) | (0.41, 0.02, P = 0.67, N = 859) |
rs323846(T)/12:125879853* | TMEM132B | (0.4, 0.007, P = 4.1e-05, N = 7824) | (0.2, 0.024, P = 0.69, N = 859) |
rs137938435(GA)/12:26377718 | SSPN | (0.24, 0.18, P = 7e-06, N = 1955) | (0.031, 0.042, P = 0.76, N = 859) |
rs7953233(A)/12:47223717* | SLC38A4 | (0.54, -0.007, P = 3.9e-05, N = 7824) | (0.32, 0.058, P = 0.29, N = 859) |
rs2711706(A)/12:47414993* | intergenic | (0.29, 0.19, P = 7e-07, N = 1955) | (0.59, 0.0033, P = 0.94, N = 859) |
rs1466383(T)/12:57231497 | RP11-74M13.4 | (0.27, 0.0075, P = 2.8e-05, N = 7824) | (0.084, -0.083, P = 0.34, N = 859) |
rs1546410(A)/12:61582882* | intergenic | (0.64, -0.0072, P = 3.8e-05, N = 7824) | (0.42, -0.038, P = 0.43, N = 859) |
rs6581892(A)/12:69817077 | RP11-159A18.1 | (0.68, 0.0075, P = 1.5e-05, N = 7824) | (0.53, -0.014, P = 0.76, N = 859) |
rs1868798(A)/12:7284081* | CLSTN3 | (0.14, -0.011, P = 3.5e-05, N = 7824) | (0.2, 0.071, P = 0.24, N = 859) |
rs1511589(A)/12:84061431* | intergenic | (0.46, 0.0077, P = 7.6e-06, N = 7824) | (0.27, 0.013, P = 0.81, N = 859) |
rs7305379(T)/12:86431706 | MGAT4C | (0.38, -0.15, P = 7.3e-07, N = 1955) | (0.52, 0.079, P = 0.091, N = 859) |
rs9514083(A)/13:103680517 | intergenic | (0.52, -0.0071, P = 3.7e-05, N = 7824) | (0.32, 0.013, P = 0.81, N = 859) |
rs12874443(T)/13:38304884 | TRPC4 | (0.43, -0.0075, P = 1.2e-05, N = 7824) | (0.084, 0.084, P = 0.34, N = 859) |
rs9566810(T)/13:42199332 | VWA8 | (0.28, 0.0076, P = 1.8e-05, N = 7824) | (0.45, -0.013, P = 0.79, N = 859) |
rs7331220(T)/13:43294055 | intergenic | (0.32, -0.0074, P = 2.4e-05, N = 7824) | (0.32, 0.089, P = 0.086, N = 859) |
rs35543760(C)/14:100221612 | EML1 | (0.29, 0.18, P = 6.8e-06, N = 1955) | (0.12, 0.0014, P = 0.98, N = 859) |
rs12147171(C)/14:20529449 | OR4L1 | (0.12, -0.012, P = 4.8e-06, N = 7824) | (0.027, -0.083, P = 0.57, N = 859) |
rs11848535(T)/14:20777431* | TTC5 | (0.44, 0.16, P = 3e-06, N = 1955) | (0.26, -0.091, P = 0.1, N = 859) |
rs8021336(A)/14:32733465 | intergenic | (0.31, -0.0086, P = 9.9e-07, N = 7824) | (0.31, 0.0079, P = 0.88, N = 859) |
rs7157943(A)/14:32754446* | intergenic | (0.93, 0.015, P = 8.1e-06, N = 7824) | (0.81, 0.024, P = 0.7, N = 859) |
rs17105196(T)/14:37208917* | SLC25A21 | (0.28, -0.0074, P = 2.1e-05, N = 7824) | (0.16, -0.081, P = 0.22, N = 859) |
rs996326(A)/14:40687518* | intergenic | (0.88, 0.011, P = 1.2e-05, N = 7824) | (0.92, -0.098, P = 0.28, N = 859) |
rs3916613(T)/14:59552553 | intergenic | (0.12, 0.011, P = 3.4e-05, N = 7824) | (0.1, -0.066, P = 0.4, N = 859) |
rs2842322(A)/14:68915416 | RAD51B | (0.31, -0.0076, P = 1e-05, N = 7824) | (0.21, -0.086, P = 0.15, N = 859) |
rs11626446(A)/14:78710044 | NRXN3 | (0.27, -0.0097, P = 2.7e-05, N = 7824) | (0.12, -0.1, P = 0.17, N = 859) |
rs2057311(C)/14:86086438 | FLRT2 | (0.58, 0.0074, P = 1.9e-05, N = 7824) | (0.58, 0.00029, P = 1, N = 859) |
rs2959197(A)/15:101606890 | LRRK1 | (0.3, -0.0072, P = 4.1e-05, N = 7824) | (0.096, 0.21, P = 0.0083, N = 859) |
rs892775(A)/15:33824530 | RYR3 | (0.74, 0.2, P = 2.6e-06, N = 1955) | (0.31, -0.053, P = 0.3, N = 859) |
rs28631731(C)/15:36829334 | intergenic | (0.39, 0.16, P = 3.2e-06, N = 1955) | (0.45, -0.15, P = 0.0023, N = 859) |
rs17718330(T)/15:40123349* | GPR176 | (0.7, 0.0072, P = 4.2e-05, N = 7824) | (0.86, 0.017, P = 0.81, N = 859) |
rs10518834(A)/15:56345066* | intergenic | (0.64, -0.0071, P = 3.9e-05, N = 7824) | (0.76, -0.034, P = 0.55, N = 859) |
rs8033140(T)/15:68198741* | intergenic | (0.35, 0.008, P = 4.3e-06, N = 7824) | (0.094, -0.086, P = 0.3, N = 859) |
rs11634207(A)/15:93526003* | CHD2 | (0.72, 0.0074, P = 2.8e-05, N = 7824) | (0.8, 0.026, P = 0.67, N = 859) |
rs1437588(A)/15:96809782 | NR2F2-AS1 | (0.48, 0.0078, P = 7.7e-06, N = 7824) | (0.12, 0.15, P = 0.037, N = 859) |
rs3112726(T)/16:2748699* | KCTD5 | (0.46, 0.0073, P = 3.2e-05, N = 7824) | (0.68, -0.035, P = 0.49, N = 859) |
rs9806843(A)/16:58704861* | SLC38A7 | (0.6, -0.0073, P = 2.4e-05, N = 7824) | (0.5, -0.059, P = 0.22, N = 859) |
rs7194755(T)/16:7064036* | RBFOX1 | (0.26, -0.0099, P = 1.9e-05, N = 7824) | (0.16, -0.061, P = 0.36, N = 859) |
rs10781983(A)/16:77441179* | ADAMTS18 | (0.63, -0.0071, P = 5e-05, N = 7824) | (0.35, 0.0079, P = 0.88, N = 859) |
rs8054103(A)/16:87420182 | FBXO31 | (0.55, 0.0071, P = 2.7e-05, N = 7824) | (0.11, -0.0028, P = 0.97, N = 859) |
rs758186(T)/17:12500658 | LINC00670 | (0.65, -0.0077, P = 8.7e-06, N = 7824) | (0.53, -0.03, P = 0.53, N = 859) |
rs733099(A)/17:4658971* | intergenic | (0.27, 0.0076, P = 1.4e-05, N = 7824) | (0.22, -0.023, P = 0.69, N = 859) |
rs12600861(C)/17:7355621 | CHRNB1 | (0.33, -0.14, P = 2.5e-06, N = 1955) | (0.37, -0.042, P = 0.39, N = 859) |
rs4791811(A)/17:9066853 | NTN1 | (0.71, 0.0077, P = 1.2e-05, N = 7824) | (0.63, -0.029, P = 0.56, N = 859) |
rs17681684(A)/17:9792768* | GLP2R | (0.32, 0.0085, P = 1e-06, N = 7824) | (0.054, -0.07, P = 0.5, N = 859) |
rs539904(A)/18:22085351 | intergenic | (0.71, -0.0086, P = 1.5e-06, N = 7824) | (0.95, 0.17, P = 0.15, N = 859) |
rs544049(A)/18:44204713* | LOXHD1 | (0.12, -0.011, P = 2.3e-05, N = 7824) | (0.23, 0.039, P = 0.49, N = 859) |
rs8097717(A)/18:69913058* | intergenic | (0.44, 0.0069, P = 4.5e-05, N = 7824) | (0.43, 0.045, P = 0.36, N = 859) |
rs6510448(T)/19:35240154 | intergenic | (0.67, 0.0077, P = 8.1e-06, N = 7824) | (0.59, -0.12, P = 0.017, N = 859) |
rs7597477(A)/2:104826331* | intergenic | (0.93, -0.015, P = 6.8e-06, N = 7824) | (0.87, 0.11, P = 0.12, N = 859) |
rs2723163(T)/2:113694339 | AC079753.5 | (0.45, -0.0069, P = 4.5e-05, N = 7824) | (0.2, -0.0053, P = 0.93, N = 859) |
rs11123366(T)/2:117209104 | intergenic | (0.86, -0.011, P = 1.6e-05, N = 7824) | (0.85, 0.075, P = 0.27, N = 859) |
rs7594831(T)/2:204439701 | intergenic | (0.28, 0.0074, P = 2.2e-05, N = 7824) | (0.3, 0.047, P = 0.36, N = 859) |
rs1374708(T)/2:205316761 | intergenic | (0.87, 0.011, P = 2.9e-05, N = 7824) | (0.75, 0.031, P = 0.58, N = 859) |
rs10190763(T)/2:20573168 | intergenic | (0.31, 0.0074, P = 1.9e-05, N = 7824) | (0.28, -0.059, P = 0.27, N = 859) |
rs879126(T)/2:207922006* | intergenic | (0.33, -0.0086, P = 7.5e-07, N = 7824) | (0.37, 0.074, P = 0.12, N = 859) |
rs759663(A)/2:208080975* | AC007879.1 | (0.68, -0.0072, P = 3.8e-05, N = 7824) | (0.85, 0.04, P = 0.55, N = 859) |
rs2007748(T)/2:211357642 | CPS1 | (0.53, 0.0095, P = 2.1e-08, N = 7824) | (0.2, 0.00063, P = 0.99, N = 859) |
rs1509820(A)/2:211386484* | CPS1 | (0.53, 0.0096, P = 1.7e-08, N = 7824) | (0.2, -0.0065, P = 0.91, N = 859) |
rs2544307(A)/2:211403117* | CPS1 | (0.39, -0.0078, P = 5.3e-06, N = 7824) | (0.43, -0.056, P = 0.26, N = 859) |
rs13010668(T)/2:211470493* | CPS1 | (0.85, 0.013, P = 3.6e-07, N = 7824) | (0.7, -0.016, P = 0.77, N = 859) |
rs12470865(A)/2:211557762* | intergenic | (0.27, 0.009, P = 3.2e-07, N = 7824) | (0.3, -0.11, P = 0.041, N = 859) |
rs10164524(A)/2:211664333* | intergenic | (0.68, -0.01, P = 1.1e-08, N = 7824) | (0.83, 0.044, P = 0.5, N = 859) |
rs895663(C)/2:30874360 | intergenic | (0.28, -0.2, P = 7e-06, N = 1955) | (0.48, -0.029, P = 0.54, N = 859) |
rs6740771(T)/2:39789288 | AC007246.3 | (0.55, -0.14, P = 8.8e-06, N = 1955) | (0.24, 0.023, P = 0.69, N = 859) |
rs6040877(A)/20:11756767* | intergenic | (0.27, -0.0081, P = 4e-06, N = 7824) | (0.63, 0.039, P = 0.43, N = 859) |
rs2809591(A)/20:11763357 | intergenic | (0.34, -0.0074, P = 1.8e-05, N = 7824) | (0.39, -0.015, P = 0.76, N = 859) |
rs6136859(T)/20:19833437* | intergenic | (0.46, 0.0071, P = 3.8e-05, N = 7824) | (0.19, 0.067, P = 0.28, N = 859) |
rs11086175(T)/20:45137362 | ZNF334 | (0.51, -0.014, P = 1.9e-05, N = 7824) | (0.35, -0.023, P = 0.65, N = 859) |
rs163781(A)/20:57563765 | NELFCD | (0.53, -0.0074, P = 1.6e-05, N = 7824) | (0.69, -0.036, P = 0.5, N = 859) |
rs229084(A)/21:28251329 | intergenic | (0.47, -0.0077, P = 6.6e-06, N = 7824) | (0.21, -0.12, P = 0.034, N = 859) |
rs8140086(A)/22:36610386 | intergenic | (0.59, -0.0069, P = 4.9e-05, N = 7824) | (0.33, -0.0068, P = 0.9, N = 859) |
rs1920325(T)/3:103866190* | intergenic | (0.64, -0.0081, P = 3.7e-06, N = 7824) | (0.81, 0.049, P = 0.42, N = 859) |
rs11128648(C)/3:13643640 | FBLN2 | (0.49, -0.007, P = 4.2e-05, N = 7824) | (0.4, -0.08, P = 0.11, N = 859) |
rs7615965(T)/3:171041464* | TNIK | (0.71, 0.0086, P = 4.1e-06, N = 7824) | (0.61, 0.0089, P = 0.86, N = 859) |
rs9824791(A)/3:171061886 | TNIK | (0.48, 0.0079, P = 6e-06, N = 7824) | (0.26, -0.019, P = 0.73, N = 859) |
rs11129411(A)/3:30535423 | intergenic | (0.38, -0.0075, P = 2.3e-05, N = 7824) | (0.64, 0.051, P = 0.3, N = 859) |
rs73067534(G)/3:32283278* | CMTM8 | (0.2, -0.21, P = 9.9e-06, N = 1955) | (0.038, -0.14, P = 0.29, N = 859) |
rs12636544(T)/3:82449136 | RP11-260O18.1 | (0.2, 0.17, P = 4.2e-06, N = 1955) | (0.19, 0.053, P = 0.38, N = 859) |
rs1380162(A)/4:119970203* | SYNPO2 | (0.33, 0.0076, P = 1.4e-05, N = 7824) | (0.22, 0.03, P = 0.61, N = 859) |
rs12499180(A)/4:130953329 | intergenic | (0.98, 0.058, P = 2e-05, N = 7824) | (0.38, -0.0048, P = 0.92, N = 859) |
rs13105113(A)/4:136527846 | intergenic | (0.88, 0.011, P = 9.2e-06, N = 7824) | (0.9, 0.11, P = 0.18, N = 859) |
rs706333(T)/4:140517700* | SETD7 | (0.46, 0.015, P = 1e-05, N = 7824) | (0.35, -0.044, P = 0.38, N = 859) |
rs1921568(T)/4:185080276* | ENPP6 | (0.29, 0.0073, P = 3.2e-05, N = 7824) | (0.32, -0.12, P = 0.03, N = 859) |
rs7696056(C)/4:22549862 | intergenic | (0.39, -0.014, P = 4.5e-05, N = 7824) | (0.21, -0.0053, P = 0.93, N = 859) |
rs1089073(G)/4:24788474 | SOD3 | (0.98, -0.34, P = 1.1e-06, N = 1955) | (0.93, 0.036, P = 0.71, N = 859) |
rs4692169(A)/4:27124674* | intergenic | (0.58, -0.0074, P = 1.7e-05, N = 7824) | (0.31, 0.041, P = 0.44, N = 859) |
rs10489008(A)/4:31718284* | intergenic | (0.49, -0.0076, P = 7.4e-06, N = 7824) | (0.87, -0.047, P = 0.52, N = 859) |
rs13122712(A)/4:39801668 | intergenic | (0.65, -0.14, P = 1e-06, N = 1955) | (0.32, 0.011, P = 0.83, N = 859) |
rs11721409(T)/4:7753417* | AFAP1-AS1 | (0.32, 0.0074, P = 1.9e-05, N = 7824) | (0.1, 0.021, P = 0.8, N = 859) |
rs11940899(T)/4:78352372 | RP11-625I7.1 | (0.34, -0.0075, P = 1.8e-05, N = 7824) | (0.52, 0.089, P = 0.074, N = 859) |
rs16841570(T)/4:8016164* | ABLIM2 | (0.97, 0.025, P = 8.6e-06, N = 7824) | (0.96, 0.031, P = 0.8, N = 859) |
rs10477454(T)/5:109636551 | TMEM232 | (0.017, -0.037, P = 4.6e-06, N = 7824) | (0.5, 0.023, P = 0.63, N = 859) |
rs17142889(T)/5:117041009 | intergenic | (0.13, 0.011, P = 9.9e-06, N = 7824) | (0.68, 0.15, P = 0.003, N = 859) |
rs17450677(T)/5:143919043 | RN7SKP246 | (0.97, 0.021, P = 1.9e-05, N = 7824) | (0.98, -0.012, P = 0.95, N = 859) |
rs2400156(A)/5:144052940 | intergenic | (0.84, -0.019, P = 3.1e-05, N = 7824) | (0.81, -0.043, P = 0.48, N = 859) |
rs6889120(T)/5:158093340 | intergenic | (0.94, -0.034, P = 7.4e-06, N = 7824) | (0.73, -0.064, P = 0.23, N = 859) |
rs76001528(C)/5:163839445 | CTC-340A15.2 | (0.097, -0.2, P = 4.2e-06, N = 1955) | (0.16, -0.059, P = 0.37, N = 859) |
rs10866666(T)/5:173036786 | BOD1 | (0.22, -0.21, P = 2.1e-06, N = 1955) | (0.028, 0.15, P = 0.3, N = 859) |
rs682103(T)/5:53394938* | ARL15 | (0.71, -0.0097, P = 4.3e-08, N = 7824) | (0.93, -0.14, P = 0.15, N = 859) |
rs4143655(A)/5:66824167* | RP11-434D9.1 | (0.14, -0.011, P = 3.6e-05, N = 7824) | (0.52, 0.042, P = 0.38, N = 859) |
rs224807(A)/5:81686624* | ATP6AP1L | (0.29, -0.0072, P = 4e-05, N = 7824) | (0.28, 0.016, P = 0.77, N = 859) |
rs9400834(T)/6:115675458* | RP11-126M14.1 | (0.7, 0.008, P = 5.6e-06, N = 7824) | (0.91, 0.16, P = 0.062, N = 859) |
rs9401513(A)/6:122675030 | intergenic | (0.86, -0.022, P = 3.4e-05, N = 7824) | (0.68, -0.093, P = 0.072, N = 859) |
rs10456994(T)/6:132515568* | intergenic | (0.52, -0.007, P = 4.3e-05, N = 7824) | (0.79, -0.022, P = 0.71, N = 859) |
rs2506864(T)/6:141041299* | intergenic | (0.41, -0.0076, P = 8.8e-06, N = 7824) | (0.37, -0.015, P = 0.77, N = 859) |
rs619095(C)/6:169098800* | intergenic | (0.64, -0.0073, P = 2.7e-05, N = 7824) | (0.12, -0.047, P = 0.52, N = 859) |
rs7747114(G)/6:29919774* | HLA-W | (0.53, 0.16, P = 9.9e-06, N = 1955) | (0.68, 0.046, P = 0.35, N = 859) |
rs112100248(T)/6:30798476* | LINC00243 | (0.02, 0.51, P = 2.4e-06, N = 1955) | (0.035, -0.093, P = 0.46, N = 859) |
rs9267536(C)/6:31651194 | LY6G5C | (0.039, 0.43, P = 3e-06, N = 1955) | (0.079, 0.05, P = 0.57, N = 859) |
rs239787(A)/6:54798887 | FAM83B | (0.17, -0.01, P = 4.4e-05, N = 7824) | (0.32, -0.13, P = 0.01, N = 859) |
rs6899649(T)/6:54892267* | intergenic | (0.38, 0.0072, P = 2.4e-05, N = 7824) | (0.41, 0.059, P = 0.23, N = 859) |
rs3846917(T)/6:55257798* | GFRAL | (0.12, -0.011, P = 4.5e-05, N = 7824) | (0.45, -0.022, P = 0.65, N = 859) |
rs9354336(T)/6:66609594 | intergenic | (0.87, 0.011, P = 8.6e-06, N = 7824) | (0.87, -0.11, P = 0.11, N = 859) |
rs779463(T)/6:69942066 | BAI3 | (0.3, -0.0077, P = 9.5e-06, N = 7824) | (0.048, 0.086, P = 0.46, N = 859) |
rs2487410(T)/6:70547652 | intergenic | (0.47, -0.0081, P = 1.8e-06, N = 7824) | (0.54, -0.019, P = 0.69, N = 859) |
rs6925293(T)/6:99054479 | intergenic | (0.58, 0.0073, P = 2.3e-05, N = 7824) | (0.12, -0.067, P = 0.35, N = 859) |
rs10234187(T)/7:11216782 | AC004538.3 | (0.32, 0.0085, P = 1.1e-06, N = 7824) | (0.31, 0.041, P = 0.42, N = 859) |
rs3778842(T)/7:134474096* | CALD1 | (0.68, 0.0077, P = 1.1e-05, N = 7824) | (0.73, 0.058, P = 0.28, N = 859) |
rs6952398(T)/7:151396253 | PRKAG2 | (0.63, -0.0081, P = 1.5e-05, N = 7824) | (0.43, 0.0087, P = 0.86, N = 859) |
rs12701265(A)/7:32971236* | RP9P | (0.39, 0.0086, P = 7.4e-07, N = 7824) | (0.068, -0.02, P = 0.84, N = 859) |
rs17821771(T)/7:33973249 | BMPER | (0.35, -0.0082, P = 1.9e-06, N = 7824) | (0.27, -0.00061, P = 0.99, N = 859) |
rs17670957(T)/7:54412203 | RP11-436F9.1 | (0.39, 0.007, P = 4.4e-05, N = 7824) | (0.39, -0.02, P = 0.69, N = 859) |
rs28662(T)/7:92775019 | SAMD9L | (0.18, -0.011, P = 1.3e-05, N = 7824) | (0.077, -0.031, P = 0.74, N = 859) |
rs17766353(T)/8:10254824 | MSRA | (0.14, 0.011, P = 4.9e-05, N = 7824) | (0.034, 0.061, P = 0.65, N = 859) |
rs10955258(T)/8:102593321 | GRHL2 | (0.23, -0.0097, P = 4.3e-05, N = 7824) | (0.25, -0.058, P = 0.3, N = 859) |
rs13267180(A)/8:10466482* | RP1L1 | (0.48, 0.0081, P = 3.8e-06, N = 7824) | (0.41, 0.012, P = 0.81, N = 859) |
rs7001456(C)/8:10804865 | XKR6 | (0.61, -0.0078, P = 5.1e-06, N = 7824) | (0.64, -0.067, P = 0.17, N = 859) |
rs6601541(T)/8:10830743* | XKR6 | (0.63, -0.0074, P = 2.3e-05, N = 7824) | (0.27, -0.062, P = 0.25, N = 859) |
rs2350885(A)/8:111233137 | intergenic | (0.35, -0.0079, P = 8.7e-06, N = 7824) | (0.68, 0.019, P = 0.72, N = 859) |
rs6994363(A)/8:11125062* | LINC00529 | (0.87, -0.012, P = 2.5e-06, N = 7824) | (0.63, -0.11, P = 0.031, N = 859) |
rs73367050(T)/8:134689892 | intergenic | (0.048, 0.28, P = 6.3e-06, N = 1955) | (0.11, 0.05, P = 0.52, N = 859) |
rs34161175(T)/8:23631530 | RP11-175E9.1 | (0.36, 0.19, P = 3.8e-06, N = 1955) | (0.065, 0.0084, P = 0.93, N = 859) |
rs11993007(A)/8:28307911 | FBXO16 | (0.32, -0.013, P = 5.2e-06, N = 7824) | (0.62, 0.038, P = 0.44, N = 859) |
rs6999701(A)/8:74678452 | RP11-463D19.2 | (0.89, -0.014, P = 1.4e-05, N = 7824) | (0.88, -0.021, P = 0.78, N = 859) |
rs10504742(A)/8:82788367* | intergenic | (0.55, -0.0081, P = 2.6e-06, N = 7824) | (0.87, 0.003, P = 0.97, N = 859) |
rs1610360(A)/9:12385710* | intergenic | (0.67, 0.008, P = 4.6e-06, N = 7824) | (0.76, -0.081, P = 0.14, N = 859) |
rs76266684(G)/9:132755555 | FNBP1 | (0.081, 0.29, P = 1.3e-06, N = 1955) | (0.032, 0.073, P = 0.6, N = 859) |
rs10901320(A)/9:133290721 | HMCN2 | (0.43, 0.0087, P = 4.3e-07, N = 7824) | (0.27, -0.098, P = 0.073, N = 859) |
rs10901047(T)/9:133323675 | ASS1 | (0.59, -0.009, P = 3e-07, N = 7824) | (0.76, 0.024, P = 0.66, N = 859) |
rs554710(T)/9:136181848* | LCN1P2 | (0.71, -0.0084, P = 1.6e-06, N = 7824) | (0.46, -0.078, P = 0.11, N = 859) |
rs4961685(A)/9:16249141* | C9orf92 | (0.33, -0.0073, P = 2.4e-05, N = 7824) | (0.3, 0.039, P = 0.45, N = 859) |
rs12348439(T)/9:89869968 | intergenic | (0.055, -0.018, P = 1.3e-05, N = 7824) | (0.19, 0.1, P = 0.089, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 166 | -0.052 (-0.19- 0.081) P=0.44 | 3.8 | 31 | 1.01 (0- 91.6) | NA | NA | 0.003 P=0.58 |
MR-Egger | 166 | -0.072 (-0.22- 0.079) P=0.35 | 3.8 | 31 | 1.01 (0- 91.6) | 188 | 0.096 | 0.003 P=0.58 |
Weighted median | 166 | 0.012 (-0.18- 0.2) P=0.9 | 3.8 | 31 | 1.01 (0- 91.6) | NA | NA | 0.003 P=0.58 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.05 | 0.07 | -0.77 | 0.45 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 96 | -0.06 (-0.22- 0.1) P=0.46 | 5.1 | 24 | 2.6 (0- 96.7) | NA | NA | 0.0022 P=0.78 |
MR-Egger | 96 | -0.074 (-0.26- 0.11) P=0.44 | 5.1 | 24 | 2.6 (0- 96.7) | 121 | 0.033 | 0.0022 P=0.78 |
Weighted median | 96 | 0.031 (-0.17- 0.23) P=0.77 | 5.1 | 24 | 2.6 (0- 96.7) | NA | NA | 0.0022 P=0.78 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.06 | 0.08 | -0.73 | 0.46 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Creatinine (Shin et al/Long et al) | eGFR (CSSCD) |
rs6537817(C)/1:114752168* | RP4-543J13.1 | (0.82, -0.0078, P = 1.2e-05, N = 7824) | (0.58, 0.085, P = 0.078, N = 859) |
rs4460629(T)/1:155135335 | intergenic | (0.52, -0.0045, P = 2.2e-06, N = 7824) | (0.3, 0.043, P = 0.42, N = 859) |
rs6424850(A)/1:182344926 | intergenic | (0.48, 0.14, P = 8.5e-07, N = 1958) | (0.74, 0.045, P = 0.4, N = 859) |
rs815759(A)/1:189907398 | intergenic | (0.048, 0.014, P = 2.8e-05, N = 7824) | (0.012, -0.051, P = 0.82, N = 859) |
rs10159366(A)/1:204975980 | NFASC | (0.87, 0.008, P = 2.5e-05, N = 7824) | (0.96, 0.023, P = 0.86, N = 859) |
rs6663614(A)/1:213097941* | intergenic | (0.21, -0.01, P = 3.1e-06, N = 7824) | (0.23, -0.1, P = 0.073, N = 859) |
rs496018(T)/1:238079056* | RP11-193H5.1 | (0.2, 0.16, P = 1.2e-06, N = 1958) | (0.66, 0.11, P = 0.037, N = 859) |
rs12142891(C)/1:61652197* | NFIA | (0.098, 0.23, P = 6.6e-06, N = 1958) | (0.015, 0.19, P = 0.33, N = 859) |
rs1498350(A)/1:67294143* | WDR78 | (0.5, 0.0045, P = 1.9e-06, N = 7824) | (0.62, 0.047, P = 0.33, N = 859) |
rs394282(A)/1:8284657 | RP11-431K24.4 | (0.11, -0.016, P = 1e-06, N = 7824) | (0.22, -0.013, P = 0.83, N = 859) |
rs1116866(T)/1:96976835 | intergenic | (0.1, 0.0094, P = 2.9e-07, N = 7824) | (0.027, 0.084, P = 0.58, N = 859) |
rs2694773(A)/10:117844652* | GFRA1 | (0.92, 0.023, P = 2.8e-05, N = 7824) | (0.75, 0.0027, P = 0.96, N = 859) |
rs11599763(T)/10:11855599* | intergenic | (0.39, -0.0069, P = 3.2e-05, N = 7824) | (0.51, 0.035, P = 0.48, N = 859) |
rs10749270(G)/10:120542167* | U3 | (0.75, 0.21, P = 7.1e-06, N = 1958) | (0.69, 0.055, P = 0.3, N = 859) |
rs7910801(A)/10:126037889 | intergenic | (0.96, 0.015, P = 4.5e-05, N = 7824) | (0.81, -0.0066, P = 0.92, N = 859) |
rs12269670(A)/10:132619537 | intergenic | (0.97, -0.015, P = 4.3e-05, N = 7824) | (0.81, 0.003, P = 0.96, N = 859) |
rs703067(T)/10:31909119* | intergenic | (0.48, 0.18, P = 5.2e-06, N = 1958) | (0.25, 0.026, P = 0.65, N = 859) |
rs2289804(A)/10:69993032 | ATOH7 | (0.93, -0.014, P = 1.2e-07, N = 7824) | (0.56, -0.017, P = 0.72, N = 859) |
rs10823168(T)/10:70019917 | KRT19P4 | (0.055, 0.013, P = 6.2e-07, N = 7824) | (0.16, 0.014, P = 0.82, N = 859) |
rs10998157(A)/10:70188523* | DNA2 | (0.051, 0.011, P = 4.7e-05, N = 7824) | (0.16, -0.041, P = 0.54, N = 859) |
rs7073038(T)/10:70308535 | TMEM14D | (0.038, 0.015, P = 1.9e-05, N = 7824) | (0.13, -0.053, P = 0.47, N = 859) |
rs827334(A)/10:72676412* | intergenic | (0.12, 0.0076, P = 3.8e-05, N = 7824) | (0.025, 0.038, P = 0.8, N = 859) |
rs75751082(A)/10:73205549 | CDH23 | (0.11, -0.19, P = 3.1e-06, N = 1958) | (0.077, -0.064, P = 0.48, N = 859) |
rs7087345(A)/10:78651808 | KCNMA1 | (0.95, 0.011, P = 4.9e-05, N = 7824) | (0.85, -0.0042, P = 0.95, N = 859) |
rs12218515(C)/10:91054291 | LIPA | (0.86, 0.0075, P = 2.6e-05, N = 7824) | (0.88, -0.034, P = 0.64, N = 859) |
rs12770938(A)/10:91606212 | intergenic | (0.11, 0.0077, P = 2.9e-05, N = 7824) | (0.33, -0.032, P = 0.54, N = 859) |
rs17094111(T)/10:92121337 | intergenic | (0.92, 0.01, P = 4.8e-05, N = 7824) | (0.95, 0.022, P = 0.84, N = 859) |
rs482007(T)/11:100228729* | CNTN5 | (0.89, 0.0077, P = 2.5e-05, N = 7824) | (0.8, -0.16, P = 0.0074, N = 859) |
rs4937771(A)/11:133307073 | snoU13 | (0.042, 0.014, P = 2.6e-05, N = 7824) | (0.53, 0.019, P = 0.68, N = 859) |
rs12801550(T)/11:13993754 | SPON1 | (0.87, 0.0088, P = 9.6e-07, N = 7824) | (0.98, -0.24, P = 0.2, N = 859) |
rs11037075(A)/11:42827511* | intergenic | (0.87, 0.0074, P = 4.8e-05, N = 7824) | (0.76, -0.017, P = 0.76, N = 859) |
rs11038386(T)/11:45316625* | intergenic | (0.98, 0.022, P = 2.2e-05, N = 7824) | (0.74, -0.029, P = 0.6, N = 859) |
rs6578854(A)/11:7385437 | SYT9 | (0.93, 0.011, P = 3e-05, N = 7824) | (0.76, 0.051, P = 0.35, N = 859) |
rs11054328(T)/12:11663755 | RP11-434C1.3 | (0.11, 0.0088, P = 1.5e-06, N = 7824) | (0.16, -0.035, P = 0.59, N = 859) |
rs2286044(A)/12:120571084 | GCN1L1 | (0.87, 0.0076, P = 2.3e-05, N = 7824) | (0.85, -0.056, P = 0.4, N = 859) |
rs10745813(A)/12:98265464 | intergenic | (0.81, 0.0077, P = 1.4e-05, N = 7824) | (0.9, -0.058, P = 0.48, N = 859) |
rs9577511(G)/13:113991823 | GRTP1 | (0.13, 0.21, P = 1e-06, N = 1958) | (0.21, 0.1, P = 0.09, N = 859) |
rs16943547(A)/13:90552861 | intergenic | (0.97, 0.018, P = 3.5e-05, N = 7824) | (0.98, 0.17, P = 0.31, N = 859) |
rs8181962(A)/14:26598213* | RP11-314P15.2 | (0.14, -0.0077, P = 2.1e-05, N = 7824) | (0.2, -0.11, P = 0.081, N = 859) |
rs2933188(G)/14:47382492* | MDGA2 | (0.96, -0.4, P = 6.5e-06, N = 1958) | (0.53, -0.023, P = 0.63, N = 859) |
rs1044538(A)/14:70833537 | SYNJ2BP | (0.071, -0.011, P = 1.1e-05, N = 7824) | (0.1, -0.073, P = 0.34, N = 859) |
rs2332376(T)/14:70889285 | RP11-486O13.4 | (0.074, -0.011, P = 2e-05, N = 7824) | (0.065, -0.017, P = 0.86, N = 859) |
rs4904742(T)/14:91510838 | RPS6KA5 | (0.75, -0.0077, P = 1.2e-05, N = 7824) | (0.9, 0.0086, P = 0.92, N = 859) |
rs10519445(A)/15:24106808 | intergenic | (0.53, -0.0045, P = 1.8e-06, N = 7824) | (0.18, -0.038, P = 0.53, N = 859) |
rs11638382(T)/15:29496888 | FAM189A1 | (0.19, -0.017, P = 5.1e-06, N = 7824) | (0.077, -0.13, P = 0.13, N = 859) |
rs12914647(A)/15:56594033 | TEX9 | (0.46, 0.13, P = 3.6e-06, N = 1958) | (0.15, -0.088, P = 0.2, N = 859) |
rs12324230(T)/15:75806911 | PTPN9 | (0.52, 0.0042, P = 8.7e-06, N = 7824) | (0.81, 0.018, P = 0.76, N = 859) |
rs12916220(T)/15:97091511 | CTD-2027G2.1 | (0.15, -0.0077, P = 3.5e-05, N = 7824) | (0.34, -0.008, P = 0.87, N = 859) |
rs11574941(A)/16:30493000 | ITGAL | (0.13, 0.0078, P = 2.3e-05, N = 7824) | (0.028, -0.0073, P = 0.96, N = 859) |
rs113479674(C)/16:82193037 | MPHOSPH6 | (0.11, -0.25, P = 7.1e-07, N = 1958) | (0.058, 0.066, P = 0.52, N = 859) |
rs146693640(GT)/16:82193730 | MPHOSPH6 | (0.12, -0.23, P = 5.2e-06, N = 1958) | (0.074, 0.041, P = 0.65, N = 859) |
rs6502247(A)/17:13203562 | AC003664.1 | (0.12, -0.009, P = 6.8e-06, N = 7824) | (0.58, 0.0089, P = 0.85, N = 859) |
rs12103754(T)/17:70912339* | SLC39A11 | (0.26, -0.21, P = 8.2e-06, N = 1958) | (0.19, -0.0023, P = 0.97, N = 859) |
rs12961855(A)/18:11670845 | RP11-677O4.2 | (0.48, 0.0039, P = 4e-05, N = 7824) | (0.82, 0.081, P = 0.2, N = 859) |
rs10421262(T)/19:14172951 | PALM3 | (0.69, -0.021, P = 2.7e-05, N = 7824) | (0.48, -0.041, P = 0.41, N = 859) |
rs4803352(T)/19:41159193* | intergenic | (0.87, -0.0079, P = 1.4e-05, N = 7824) | (0.78, -0.083, P = 0.15, N = 859) |
rs10426415(A)/19:41183590* | NUMBL | (0.88, -0.0086, P = 3.1e-06, N = 7824) | (0.8, -0.041, P = 0.49, N = 859) |
rs12459641(G)/19:7560784 | C19orf45 | (0.19, 0.23, P = 9.6e-06, N = 1958) | (0.29, 0.052, P = 0.33, N = 859) |
rs10202838(C)/2:12749003* | AC096559.2 | (0.53, 0.014, P = 3.3e-06, N = 7824) | (0.12, -0.046, P = 0.52, N = 859) |
rs355818(A)/2:165707855 | AC019181.2 | (0.89, 0.0078, P = 2.2e-05, N = 7824) | (0.6, 0.012, P = 0.81, N = 859) |
rs1374355(A)/2:200156193 | SATB2 | (0.11, 0.0083, P = 8.6e-06, N = 7824) | (0.46, 0.011, P = 0.82, N = 859) |
rs13414802(A)/2:210732686* | UNC80 | (0.88, 0.0077, P = 2.9e-05, N = 7824) | (0.65, -0.021, P = 0.67, N = 859) |
rs2048277(A)/2:211151774* | MYL1 | (0.9, 0.0083, P = 8.8e-06, N = 7824) | (0.78, 0.00076, P = 0.99, N = 859) |
rs62192370(G)/2:237254757 | IQCA1 | (0.38, 0.14, P = 6.8e-07, N = 1958) | (0.26, 0.0014, P = 0.98, N = 859) |
rs35202902(T)/2:240734453 | intergenic | (0.27, -0.16, P = 3.3e-06, N = 1958) | (0.079, -0.13, P = 0.14, N = 859) |
rs10175998(C)/2:38559325 | ATL2 | (0.28, 0.15, P = 1.5e-06, N = 1958) | (0.32, -0.02, P = 0.69, N = 859) |
rs917969(T)/2:40207338 | SLC8A1-AS1 | (0.24, 0.0071, P = 4.3e-05, N = 7824) | (0.87, -0.02, P = 0.77, N = 859) |
rs7596081(A)/2:46464297 | intergenic | (0.53, -0.14, P = 1.7e-06, N = 1958) | (0.46, -0.03, P = 0.53, N = 859) |
rs13031396(T)/2:60717399* | BCL11A | (0.25, -0.0076, P = 9.2e-06, N = 7824) | (0.074, -0.19, P = 0.035, N = 859) |
rs2219379(A)/2:6711467 | intergenic | (0.2, 0.0072, P = 4.1e-05, N = 7824) | (0.31, -0.12, P = 0.017, N = 859) |
rs11694230(T)/2:6839127 | intergenic | (0.34, -0.0075, P = 9e-06, N = 7824) | (0.13, -0.019, P = 0.79, N = 859) |
rs4853412(C)/2:79019736 | intergenic | (0.46, -0.14, P = 8.1e-06, N = 1958) | (0.24, -0.014, P = 0.81, N = 859) |
rs7263330(A)/20:31534701 | intergenic | (0.035, -0.015, P = 1.6e-05, N = 7824) | (0.13, -0.13, P = 0.06, N = 859) |
rs925300(C)/20:5624244 | intergenic | (0.48, -0.19, P = 1.2e-06, N = 1958) | (0.71, 0.07, P = 0.18, N = 859) |
rs2833854(A)/21:33869440* | EVA1C | (0.86, -0.0076, P = 2.1e-05, N = 7824) | (0.89, -0.14, P = 0.07, N = 859) |
rs3895614(T)/21:43182633* | RIPK4 | (0.11, -0.0081, P = 1.5e-05, N = 7824) | (0.12, -0.016, P = 0.83, N = 859) |
rs17002948(T)/22:42688724 | TCF20 | (0.86, 0.0079, P = 1.9e-05, N = 7824) | (0.83, -0.071, P = 0.27, N = 859) |
rs1955135(A)/3:105164872* | ALCAM | (0.87, 0.008, P = 1e-05, N = 7824) | (0.83, 0.016, P = 0.8, N = 859) |
rs4684042(A)/3:10559202* | ATP2B2 | (0.98, -0.023, P = 1.2e-05, N = 7824) | (0.84, -0.012, P = 0.86, N = 859) |
rs2007634(A)/3:139678136* | CLSTN2 | (0.59, 0.2, P = 5.1e-07, N = 1958) | (0.23, -0.018, P = 0.75, N = 859) |
rs11715139(A)/3:171732927 | intergenic | (0.82, 0.0072, P = 4.2e-05, N = 7824) | (0.78, 0.12, P = 0.042, N = 859) |
rs11925770(T)/3:36339059* | intergenic | (0.015, -0.76, P = 3.3e-06, N = 1958) | (0.17, 0.063, P = 0.33, N = 859) |
rs34667937(G)/3:46576351 | LRRC2 | (0.36, 0.16, P = 7e-06, N = 1958) | (0.14, 0.068, P = 0.34, N = 859) |
rs35119986(C)/3:74280018 | intergenic | (0.13, -0.25, P = 9.4e-06, N = 1958) | (0.19, -0.004, P = 0.95, N = 859) |
rs1447833(C)/3:79039406* | ROBO1 | (0.091, -0.29, P = 6.6e-07, N = 1958) | (0.015, -0.42, P = 0.037, N = 859) |
rs17785887(T)/4:179536770 | intergenic | (0.82, -0.017, P = 2.1e-05, N = 7824) | (0.84, -0.028, P = 0.67, N = 859) |
rs17533525(T)/5:106779692* | EFNA5 | (0.15, 0.0082, P = 5e-06, N = 7824) | (0.032, -0.18, P = 0.2, N = 859) |
rs9312777(T)/5:11556754* | CTNND2 | (0.48, 0.0043, P = 4.7e-06, N = 7824) | (0.64, 0.02, P = 0.67, N = 859) |
rs10478509(A)/5:120529790* | CTD-2020P22.1 | (0.48, -0.0041, P = 1.4e-05, N = 7824) | (0.65, -0.0036, P = 0.94, N = 859) |
rs2695978(A)/5:165695551 | intergenic | (0.5, 0.004, P = 2e-05, N = 7824) | (0.39, -0.084, P = 0.087, N = 859) |
rs28362590(T)/5:176731452* | PRELID1 | (0.75, -0.18, P = 8.2e-07, N = 1958) | (0.86, -0.15, P = 0.04, N = 859) |
rs12517218(C)/5:2157589* | intergenic | (0.067, -0.26, P = 9.1e-06, N = 1958) | (0.054, -0.027, P = 0.8, N = 859) |
rs1330649(C)/5:26038348 | intergenic | (0.99, 0.59, P = 3.8e-06, N = 1958) | (0.87, 0.053, P = 0.47, N = 859) |
rs6452345(T)/5:26568243* | intergenic | (0.17, -0.0076, P = 1.4e-05, N = 7824) | (0.054, 0.14, P = 0.19, N = 859) |
rs12517707(A)/5:5131299* | CTD-2297D10.2 | (0.81, 0.0072, P = 3.7e-05, N = 7824) | (0.87, 0.07, P = 0.34, N = 859) |
rs2278241(A)/5:76326885* | AGGF1 | (0.27, -0.19, P = 1.2e-06, N = 1958) | (0.078, -0.12, P = 0.2, N = 859) |
rs17235037(T)/5:9013608* | CTD-2215L10.1 | (0.12, 0.0078, P = 1.6e-05, N = 7824) | (0.035, 0.22, P = 0.1, N = 859) |
rs12175103(A)/6:100706809* | intergenic | (0.42, 0.0048, P = 4.9e-07, N = 7824) | (0.28, 0.045, P = 0.41, N = 859) |
rs12660850(C)/6:139903229 | intergenic | (0.93, -0.011, P = 1.2e-05, N = 7824) | (0.93, -0.12, P = 0.19, N = 859) |
rs9477021(C)/6:16061453 | intergenic | (0.018, -0.024, P = 7.7e-06, N = 7824) | (0.15, -0.13, P = 0.056, N = 859) |
rs9456538(A)/6:160853393* | SLC22A3 | (0.15, -0.0082, P = 4.2e-06, N = 7824) | (0.37, -0.12, P = 0.011, N = 859) |
rs4960121(G)/6:5649266* | FARS2 | (0.75, 0.19, P = 3.6e-06, N = 1958) | (0.53, -0.059, P = 0.22, N = 859) |
rs6459184(T)/6:57160035 | intergenic | (0.52, -0.0039, P = 3.9e-05, N = 7824) | (0.79, -0.064, P = 0.28, N = 859) |
rs849415(A)/7:106552538 | PIK3CG | (0.9, -0.0078, P = 2.2e-05, N = 7824) | (0.81, -0.0093, P = 0.88, N = 859) |
rs10216203(T)/7:140168158* | MKRN1 | (0.88, 0.0078, P = 2e-05, N = 7824) | (0.32, 0.035, P = 0.49, N = 859) |
rs1990178(T)/7:21300265* | intergenic | (0.19, -0.016, P = 6.3e-06, N = 7824) | (0.069, -0.048, P = 0.61, N = 859) |
rs2042499(A)/7:24095366 | intergenic | (0.48, 0.0052, P = 4.9e-08, N = 7824) | (0.2, 0.0026, P = 0.97, N = 859) |
rs4720409(A)/7:41884913* | intergenic | (0.68, 0.0068, P = 4.9e-05, N = 7824) | (0.81, 0.08, P = 0.19, N = 859) |
rs6955253(T)/7:54619356 | VSTM2A | (0.84, -0.017, P = 2.8e-05, N = 7824) | (0.73, 0.025, P = 0.64, N = 859) |
rs13225353(T)/7:68441909 | intergenic | (0.12, 0.0077, P = 2.1e-05, N = 7824) | (0.11, -0.01, P = 0.9, N = 859) |
rs2521310(T)/7:89352860 | intergenic | (0.87, 0.009, P = 6.8e-06, N = 7824) | (0.68, -0.026, P = 0.6, N = 859) |
rs17198100(T)/8:103928846 | KB-1507C5.2 | (0.11, 0.02, P = 1.1e-05, N = 7824) | (0.024, 0.18, P = 0.26, N = 859) |
rs11985537(T)/8:129168086* | intergenic | (0.13, 0.0076, P = 3.6e-05, N = 7824) | (0.086, -0.059, P = 0.48, N = 859) |
rs10088988(C)/8:14112859 | SGCZ | (0.15, 0.0073, P = 4.5e-05, N = 7824) | (0.44, -0.02, P = 0.67, N = 859) |
rs71217388(AC)/8:18452739 | PSD3 | (0.13, 0.14, P = 6.6e-06, N = 1958) | (0.16, -0.052, P = 0.43, N = 859) |
rs17830054(T)/8:1892619* | ARHGEF10 | (0.12, -0.008, P = 1.5e-05, N = 7824) | (0.041, -0.2, P = 0.099, N = 859) |
rs4961420(C)/8:20731339* | intergenic | (0.64, 0.007, P = 3.2e-05, N = 7824) | (0.69, -0.05, P = 0.32, N = 859) |
rs2979688(T)/8:24814205* | NEFL | (0.64, 0.24, P = 3.6e-06, N = 1958) | (0.3, 0.0069, P = 0.9, N = 859) |
rs2543041(A)/8:39817470* | IDO2 | (0.12, 0.0076, P = 2.7e-05, N = 7824) | (0.42, 0.014, P = 0.77, N = 859) |
rs17070697(T)/8:4447662 | CSMD1 | (0.13, -0.0075, P = 2.9e-05, N = 7824) | (0.41, 0.038, P = 0.44, N = 859) |
rs10968052(T)/9:27678482* | intergenic | (0.12, 0.0075, P = 3.9e-05, N = 7824) | (0.038, 0.065, P = 0.61, N = 859) |
rs10970461(A)/9:31632171 | intergenic | (0.91, 0.01, P = 4.1e-05, N = 7824) | (0.99, 0.11, P = 0.61, N = 859) |
rs10975539(T)/9:6308729* | intergenic | (0.23, -0.014, P = 4e-05, N = 7824) | (0.034, 0.042, P = 0.75, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 123 | 0.056 (-0.031- 0.14) P=0.21 | 6.3 | 39 | 1.53 (0- 80.3) | NA | NA | 0.011 P=0.1 |
MR-Egger | 123 | 0.015 (-0.084- 0.11) P=0.77 | 6.3 | 39 | 1.53 (0- 80.3) | 122 | 0.47 | 0.011 P=0.1 |
Weighted median | 123 | 0.03 (-0.1- 0.16) P=0.66 | 6.3 | 39 | 1.53 (0- 80.3) | NA | NA | 0.011 P=0.1 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.06 | 0.04 | 1.27 | 0.21 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 71 | 0.081 (-0.042- 0.2) P=0.2 | 5.1 | 18 | 0 (0- 17.1) | NA | NA | 0.0026 P=0.77 |
MR-Egger | 71 | 0.068 (-0.095- 0.23) P=0.42 | 5.1 | 18 | 0 (0- 17.1) | 54 | 0.91 | 0.0026 P=0.77 |
Weighted median | 71 | 0.086 (-0.14- 0.31) P=0.46 | 5.1 | 18 | 0 (0- 17.1) | NA | NA | 0.0026 P=0.77 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.08 | 0.06 | 1.29 | 0.2 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-Cystathionine (Shin et al/Long et al) | eGFR (CSSCD) |
rs115109644(C)/1:224064269* | intergenic | (0.015, 0.32, P = 9e-06, N = 1943) | (0.49, -0.063, P = 0.21, N = 859) |
rs4649409(G)/1:232971657 | RNU1-74P | (0.89, -0.28, P = 7.6e-07, N = 1943) | (0.3, -0.055, P = 0.3, N = 859) |
rs72756259(G)/1:232986317 | intergenic | (0.053, -0.34, P = 3.6e-06, N = 1943) | (0.012, 0.00067, P = 1, N = 859) |
rs6585049(T)/10:113043378 | intergenic | (0.89, -0.16, P = 9.6e-06, N = 1943) | (0.48, 0.071, P = 0.14, N = 859) |
rs7918657(T)/10:14395828 | FRMD4A | (0.12, 0.24, P = 1.5e-06, N = 1943) | (0.091, -0.0053, P = 0.95, N = 859) |
rs2660220(T)/10:52736099 | intergenic | (0.86, 0.18, P = 6.3e-06, N = 1943) | (0.96, 0.067, P = 0.59, N = 859) |
rs4121607(C)/11:60306301 | MS4A13 | (0.81, -0.14, P = 7.3e-06, N = 1943) | (0.63, -0.025, P = 0.61, N = 859) |
rs75745817(C)/12:71938404 | LGR5 | (0.061, 0.36, P = 4.9e-06, N = 1943) | (0.027, -0.018, P = 0.9, N = 859) |
rs10048020(T)/15:39651363* | RP11-624L4.1 | (0.63, -0.17, P = 5.9e-07, N = 1943) | (0.72, -0.062, P = 0.25, N = 859) |
rs205132(A)/16:25622453 | intergenic | (0.14, 0.18, P = 4.7e-06, N = 1943) | (0.22, -0.048, P = 0.4, N = 859) |
rs8051862(C)/16:83386261 | CDH13 | (0.78, -0.23, P = 9e-06, N = 1943) | (0.69, 0.0085, P = 0.87, N = 859) |
rs517175(C)/18:11532945 | intergenic | (0.43, -0.15, P = 6.5e-06, N = 1943) | (0.84, -0.016, P = 0.82, N = 859) |
rs9964990(A)/18:62249459 | intergenic | (0.64, 0.18, P = 3.1e-06, N = 1943) | (0.91, -0.039, P = 0.63, N = 859) |
rs35170371(A)/19:33355081 | SLC7A9 | (0.2, 0.25, P = 2.2e-07, N = 1943) | (0.29, 0.036, P = 0.5, N = 859) |
rs13007863(C)/2:1048650 | SNTG2 | (0.27, 0.19, P = 8.3e-06, N = 1943) | (0.35, -0.0045, P = 0.93, N = 859) |
rs2365208(T)/2:31355071* | GALNT14 | (0.78, 0.23, P = 5.9e-06, N = 1943) | (0.96, 0.024, P = 0.85, N = 859) |
rs9984606(T)/21:47580684 | SPATC1L | (0.096, 0.25, P = 1e-05, N = 1943) | (0.22, -0.042, P = 0.47, N = 859) |
rs462790(C)/3:1610784* | intergenic | (0.98, 0.49, P = 7.3e-06, N = 1943) | (0.98, 0.27, P = 0.099, N = 859) |
rs9810573(T)/3:5451601* | intergenic | (0.48, 0.17, P = 3.7e-07, N = 1943) | (0.14, -0.012, P = 0.86, N = 859) |
rs1166047(T)/3:9898895 | TTLL3 | (0.74, -0.18, P = 2.7e-06, N = 1943) | (0.93, 0.13, P = 0.15, N = 859) |
rs16870330(T)/5:2703426 | intergenic | (0.013, 0.72, P = 6.5e-07, N = 1943) | (0.39, -0.0033, P = 0.95, N = 859) |
rs16899567(C)/5:2708588 | intergenic | (0.01, 0.87, P = 4.9e-06, N = 1943) | (0.12, 0.057, P = 0.45, N = 859) |
rs35492822(A)/6:169020658 | SMOC2 | (0.22, -0.2, P = 7.5e-07, N = 1943) | (0.2, 0.027, P = 0.64, N = 859) |
rs9774587(A)/8:107336888 | OXR1 | (0.23, -0.2, P = 3.1e-06, N = 1943) | (0.63, 0.038, P = 0.45, N = 859) |
rs7824505(A)/8:97330691* | PTDSS1 | (0.47, 0.15, P = 7.5e-06, N = 1943) | (0.45, 0.067, P = 0.16, N = 859) |
rs7026228(G)/9:110191946 | RP11-363D24.1 | (0.5, 0.16, P = 7.1e-06, N = 1943) | (0.21, -0.023, P = 0.7, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 26 | 0.0036 (-0.061- 0.068) P=0.91 | 24 | 32 | 0 (0- 31.3) | NA | NA | -0.014 P=0.54 |
MR-Egger | 26 | 0.041 (-0.1- 0.18) P=0.57 | 24 | 32 | 0 (0- 31.3) | 17 | 0.86 | -0.014 P=0.54 |
Weighted median | 26 | -0.0038 (-0.13- 0.12) P=0.95 | 24 | 32 | 0 (0- 31.3) | NA | NA | -0.014 P=0.54 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0 | 0.03 | 0.11 | 0.91 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 20 | -0.0046 (-0.064- 0.055) P=0.88 | 25 | 25 | 0 (0- 6.84) | NA | NA | -0.029 P=0.24 |
MR-Egger | 20 | 0.069 (-0.077- 0.22) P=0.37 | 25 | 25 | 0 (0- 6.84) | 8 | 0.98 | -0.029 P=0.24 |
Weighted median | 20 | -0.0038 (-0.13- 0.12) P=0.95 | 25 | 25 | 0 (0- 6.84) | NA | NA | -0.029 P=0.24 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0 | 0.03 | -0.15 | 0.88 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Glycine (Shin et al/Long et al) | eGFR (CSSCD) |
rs964905(T)/1:101087131 | intergenic | (0.49, -0.01, P = 2.6e-05, N = 7824) | (0.59, -0.0049, P = 0.92, N = 859) |
rs8453(T)/1:115259599 | CSDE1 | (0.16, 0.014, P = 8.1e-06, N = 7824) | (0.024, -0.091, P = 0.56, N = 859) |
rs12736195(T)/1:173307901 | intergenic | (0.72, -0.01, P = 4.3e-05, N = 7824) | (0.87, 0.085, P = 0.24, N = 859) |
rs12089471(A)/1:201162411 | IGFN1 | (0.35, -0.011, P = 1.1e-05, N = 7824) | (0.12, -0.031, P = 0.68, N = 859) |
rs782791(A)/1:202998819* | TMEM183A | (0.7, 0.011, P = 2e-05, N = 7824) | (0.64, -0.0051, P = 0.92, N = 859) |
rs10754598(A)/1:237463089* | RYR2 | (0.38, -0.01, P = 2.5e-05, N = 7824) | (0.36, 0.031, P = 0.54, N = 859) |
rs12035460(T)/1:33198711 | intergenic | (0.028, -0.2, P = 5.1e-06, N = 1959) | (0.039, -0.21, P = 0.097, N = 859) |
rs12562983(T)/1:3457311 | MEGF6 | (0.026, -0.065, P = 2.3e-05, N = 7824) | (0.015, 0.091, P = 0.65, N = 859) |
rs6683669(A)/1:59041092* | TACSTD2 | (0.068, -0.02, P = 2.8e-05, N = 7824) | (0.3, -0.14, P = 0.0063, N = 859) |
rs7079730(A)/10:11392689* | intergenic | (0.81, -0.014, P = 1.4e-05, N = 7824) | (0.96, 0.28, P = 0.019, N = 859) |
rs1907218(T)/10:122970216* | intergenic | (0.31, -0.01, P = 4.9e-05, N = 7824) | (0.43, 0.026, P = 0.6, N = 859) |
rs2474711(C)/10:33441017* | intergenic | (0.72, -0.013, P = 9.4e-06, N = 7824) | (0.95, -0.044, P = 0.68, N = 859) |
rs7908297(A)/10:5251702* | AKR1C4 | (0.11, 0.016, P = 3.7e-05, N = 7824) | (0.033, -0.34, P = 0.013, N = 859) |
rs16917276(A)/10:64230835* | ZNF365 | (0.032, -0.031, P = 9e-06, N = 7824) | (0.027, 0.3, P = 0.049, N = 859) |
rs619945(A)/11:58468173 | GLYAT | (0.73, -0.011, P = 4.6e-05, N = 7824) | (0.92, 0.081, P = 0.36, N = 859) |
rs10898864(T)/11:72405450* | ARAP1 | (0.26, 0.013, P = 1.7e-05, N = 7824) | (0.22, -0.051, P = 0.38, N = 859) |
rs491847(A)/12:101349040 | ANO4 | (0.35, -0.011, P = 5.3e-06, N = 7824) | (0.12, 0.014, P = 0.84, N = 859) |
rs11111501(T)/12:103614448 | intergenic | (0.076, -0.021, P = 5.9e-06, N = 7824) | (0.03, 0.037, P = 0.79, N = 859) |
rs4761007(T)/12:127924890* | intergenic | (0.74, 0.016, P = 4.1e-07, N = 7824) | (0.62, -0.016, P = 0.75, N = 859) |
rs7980864(A)/12:133168665 | intergenic | (0.14, -0.25, P = 7.9e-06, N = 1959) | (0.059, 0.087, P = 0.4, N = 859) |
rs2189669(A)/12:1586846* | ERC1 | (0.68, -0.01, P = 4.3e-05, N = 7824) | (0.6, -0.089, P = 0.073, N = 859) |
rs274987(G)/12:20388368 | intergenic | (0.43, -0.18, P = 8.7e-06, N = 1959) | (0.61, -0.024, P = 0.62, N = 859) |
rs739706(C)/12:47482666 | PCED1B | (0.36, -0.33, P = 9.6e-06, N = 1959) | (0.44, -0.12, P = 0.017, N = 859) |
rs17120574(T)/12:65988722 | RP11-230G5.2 | (0.92, 0.019, P = 2.6e-05, N = 7824) | (0.61, -0.072, P = 0.13, N = 859) |
rs201421(T)/12:99218243* | ANKS1B | (0.72, 0.011, P = 1.3e-05, N = 7824) | (0.63, -0.11, P = 0.029, N = 859) |
rs2209634(T)/13:48142372* | intergenic | (0.012, -0.083, P = 4.4e-05, N = 7824) | (0.38, -0.05, P = 0.34, N = 859) |
rs1350361(A)/13:60250843* | DIAPH3 | (0.49, 0.0097, P = 4.7e-05, N = 7824) | (0.19, -0.1, P = 0.11, N = 859) |
rs9572629(A)/13:71622842* | LINC00348 | (0.37, -0.01, P = 3.7e-05, N = 7824) | (0.28, 0.087, P = 0.11, N = 859) |
rs4884012(T)/13:76243575* | RP11-29G8.3 | (0.64, -0.01, P = 4.1e-05, N = 7824) | (0.65, -0.01, P = 0.83, N = 859) |
rs10129340(A)/14:100932706 | WDR25 | (0.6, -0.01, P = 2.4e-05, N = 7824) | (0.41, -0.031, P = 0.52, N = 859) |
rs268817(A)/14:58029965* | SLC35F4 | (0.27, 0.013, P = 2.1e-05, N = 7824) | (0.047, 0.2, P = 0.078, N = 859) |
rs3890482(A)/15:65840645 | PTPLAD1 | (0.74, 0.59, P = 7.3e-06, N = 1959) | (0.31, -0.024, P = 0.65, N = 859) |
rs718663(A)/15:67412596 | SMAD3 | (0.93, -0.022, P = 1.6e-05, N = 7824) | (0.91, 0.037, P = 0.67, N = 859) |
rs11857350(A)/15:88201409* | RP11-648K4.2 | (0.81, 0.015, P = 2e-05, N = 7824) | (0.96, -0.16, P = 0.16, N = 859) |
rs1143115(T)/15:93452297* | CHD2 | (0.53, -0.017, P = 3.5e-05, N = 7824) | (0.59, -0.054, P = 0.25, N = 859) |
rs4786584(T)/16:5097593 | C16orf89 | (0.14, 0.59, P = 1.8e-06, N = 1959) | (0.24, -0.0023, P = 0.97, N = 859) |
rs804895(T)/16:81099713* | C16orf46 | (0.078, -0.024, P = 8.4e-07, N = 7824) | (0.47, 0.03, P = 0.52, N = 859) |
rs8082170(T)/17:62395382 | intergenic | (0.18, 0.015, P = 1.1e-06, N = 7824) | (0.3, 0.0066, P = 0.9, N = 859) |
rs17800159(T)/18:28720147 | DSC1 | (0.13, 0.015, P = 3.6e-05, N = 7824) | (0.037, -0.15, P = 0.22, N = 859) |
rs9948977(C)/18:38610959* | intergenic | (0.5, -0.01, P = 2.2e-05, N = 7824) | (0.61, -0.051, P = 0.32, N = 859) |
rs7243793(G)/18:3862654 | DLGAP1 | (0.39, 0.32, P = 4.8e-06, N = 1959) | (0.78, 0.048, P = 0.41, N = 859) |
rs80004741(T)/19:48299916 | TPRX1 | (0.11, 1.1, P = 6.5e-06, N = 1959) | (0.024, -0.076, P = 0.63, N = 859) |
rs6738001(A)/2:10660417 | intergenic | (0.3, 0.011, P = 1.8e-05, N = 7824) | (0.39, 0.022, P = 0.66, N = 859) |
rs10186202(C)/2:127555929 | intergenic | (0.56, -0.0099, P = 4.4e-05, N = 7824) | (0.43, -0.016, P = 0.75, N = 859) |
rs7608258(A)/2:142850098* | LRP1B | (0.32, -0.011, P = 1e-05, N = 7824) | (0.37, 0.0021, P = 0.97, N = 859) |
rs7582822(A)/2:172034918 | TLK1 | (0.39, 0.011, P = 3.8e-06, N = 7824) | (0.75, 0.015, P = 0.79, N = 859) |
rs6433432(T)/2:174579886 | intergenic | (0.021, 0.039, P = 1.1e-05, N = 7824) | (0.22, 0.017, P = 0.77, N = 859) |
rs111251927(TTTTA)/2:211351706 | CPS1 | (0.22, -0.18, P = 1.5e-06, N = 1959) | (0.064, 0.083, P = 0.4, N = 859) |
rs2007748(T)/2:211357642 | CPS1 | (0.53, 0.011, P = 1.9e-06, N = 7824) | (0.2, 0.00063, P = 0.99, N = 859) |
rs6714124(T)/2:211436065* | CPS1 | (0.5, -0.017, P = 3.6e-12, N = 7824) | (0.57, 0.024, P = 0.61, N = 859) |
rs12468557(T)/2:211495587* | CPS1 | (0.38, -0.02, P = 1.7e-16, N = 7824) | (0.19, 0.093, P = 0.13, N = 859) |
rs715(T)/2:211543055* | CPS1 | (0.71, -0.076, P = 1.6e-147, N = 7824) | (0.81, -0.061, P = 0.33, N = 859) |
rs13386028(A)/2:211547400* | CPS1 | (0.38, -0.038, P = 3.6e-56, N = 7824) | (0.36, -0.12, P = 0.02, N = 859) |
rs10164524(A)/2:211664333* | intergenic | (0.68, 0.03, P = 1.1e-33, N = 7824) | (0.83, 0.044, P = 0.5, N = 859) |
rs1016403(A)/2:211704356* | intergenic | (0.86, 0.029, P = 4.2e-14, N = 7824) | (0.93, -0.071, P = 0.46, N = 859) |
rs13394054(A)/2:211742818* | intergenic | (0.39, -0.029, P = 1.7e-33, N = 7824) | (0.63, -0.064, P = 0.2, N = 859) |
rs4310999(A)/2:211750298* | intergenic | (0.25, 0.035, P = 3e-31, N = 7824) | (0.083, 0.077, P = 0.37, N = 859) |
rs6720902(T)/2:212094151 | intergenic | (0.59, -0.0099, P = 4.6e-05, N = 7824) | (0.79, -0.012, P = 0.84, N = 859) |
rs62141397(G)/2:80246161 | CTNNA2 | (0.19, 0.18, P = 2.7e-06, N = 1959) | (0.054, -0.15, P = 0.16, N = 859) |
rs4619658(C)/2:98863523* | VWA3B | (0.79, 0.23, P = 9.1e-06, N = 1959) | (0.87, 0.093, P = 0.2, N = 859) |
rs6136611(C)/20:19057513 | intergenic | (0.036, 0.63, P = 7.4e-06, N = 1959) | (0.18, -0.038, P = 0.54, N = 859) |
rs4810122(A)/20:56743597 | intergenic | (0.45, 0.01, P = 3.5e-05, N = 7824) | (0.3, -0.013, P = 0.81, N = 859) |
rs11578(T)/20:57253275* | STX16 | (0.29, 0.014, P = 1.9e-07, N = 7824) | (0.18, -0.0015, P = 0.98, N = 859) |
rs2825016(A)/21:20081605 | AL109763.2 | (0.32, 0.01, P = 3.1e-05, N = 7824) | (0.3, 4.4e-05, P = 1, N = 859) |
rs1571724(A)/21:42148836* | DSCAM | (0.83, 0.014, P = 2.3e-05, N = 7824) | (0.85, -0.033, P = 0.63, N = 859) |
rs12165565(A)/22:26226630 | MYO18B | (0.016, 0.21, P = 3.1e-06, N = 1959) | (0.047, -0.071, P = 0.54, N = 859) |
rs4494904(T)/3:101835064* | ZPLD1 | (0.4, -0.011, P = 1.5e-05, N = 7824) | (0.17, -0.1, P = 0.11, N = 859) |
rs1992854(T)/3:125909606* | ALDH1L1-AS2 | (0.37, -0.011, P = 7e-06, N = 7824) | (0.36, -0.073, P = 0.14, N = 859) |
rs12496373(A)/3:148497051* | intergenic | (0.73, -0.011, P = 2.3e-05, N = 7824) | (0.54, -0.037, P = 0.45, N = 859) |
rs7613813(A)/3:149429485* | WWTR1 | (0.33, -0.01, P = 2.7e-05, N = 7824) | (0.43, 0.0049, P = 0.92, N = 859) |
rs9823316(A)/3:7999351 | LMCD1-AS1 | (0.09, 0.018, P = 1.1e-05, N = 7824) | (0.16, 0.06, P = 0.36, N = 859) |
rs11942622(T)/4:12360318* | intergenic | (0.98, 0.071, P = 2.7e-06, N = 7824) | (0.78, -0.042, P = 0.47, N = 859) |
rs6836137(A)/4:145250822 | intergenic | (0.014, -0.079, P = 4.8e-06, N = 7824) | (0.016, -0.28, P = 0.15, N = 859) |
rs4698310(T)/4:15083363 | RP11-665G4.1 | (0.42, -0.17, P = 2.7e-06, N = 1959) | (0.7, 0.058, P = 0.28, N = 859) |
rs9998572(T)/4:170687567 | intergenic | (0.033, -0.049, P = 2.7e-05, N = 7824) | (0.16, -0.08, P = 0.23, N = 859) |
rs3904756(C)/4:19616531 | RP11-608O21.1 | (0.17, 0.16, P = 4.3e-06, N = 1959) | (0.079, 0.0018, P = 0.98, N = 859) |
rs9992408(A)/4:76265330 | RP11-542G1.1 | (0.077, -0.019, P = 4e-05, N = 7824) | (0.066, -0.12, P = 0.23, N = 859) |
rs12152753(A)/5:111443094* | intergenic | (0.32, 0.01, P = 2.9e-05, N = 7824) | (0.083, -0.12, P = 0.17, N = 859) |
rs2560698(T)/5:115388091 | ARL14EPL | (0.85, 0.016, P = 1.9e-05, N = 7824) | (0.65, -0.04, P = 0.44, N = 859) |
rs7709785(T)/5:115406397 | intergenic | (0.15, -0.018, P = 2e-06, N = 7824) | (0.26, -0.016, P = 0.76, N = 859) |
rs329319(A)/5:133906609* | JADE2 | (0.43, 0.013, P = 6.5e-07, N = 7824) | (0.52, -0.037, P = 0.44, N = 859) |
rs13181561(A)/5:138850905* | TMEM173 | (0.74, 0.012, P = 4.1e-05, N = 7824) | (0.41, -0.12, P = 0.012, N = 859) |
rs1423029(A)/5:145930544* | intergenic | (0.53, -0.01, P = 2.6e-05, N = 7824) | (0.5, 0.051, P = 0.3, N = 859) |
rs4437350(T)/5:34645265* | intergenic | (0.16, 0.39, P = 6.4e-06, N = 1959) | (0.037, -0.00099, P = 0.99, N = 859) |
rs6897751(G)/5:79113505 | CTC-431G16.2 | (0.057, 0.26, P = 9.3e-06, N = 1959) | (0.26, 0.011, P = 0.84, N = 859) |
rs268538(T)/5:9458650 | SEMA5A | (0.021, -0.064, P = 1.5e-05, N = 7824) | (0.091, -0.018, P = 0.84, N = 859) |
rs160508(A)/5:9588764 | intergenic | (0.88, 0.017, P = 1.9e-05, N = 7824) | (0.96, -0.076, P = 0.55, N = 859) |
rs583776(T)/6:10466171* | intergenic | (0.62, -0.019, P = 8.2e-06, N = 7824) | (0.64, 0.036, P = 0.47, N = 859) |
rs11152896(C)/6:105997676 | intergenic | (0.92, 0.022, P = 1.2e-05, N = 7824) | (0.73, 0.017, P = 0.75, N = 859) |
rs9483617(T)/6:134129708 | RP3-323P13.2 | (0.032, -0.051, P = 4.6e-05, N = 7824) | (0.15, 0.021, P = 0.76, N = 859) |
rs229914(A)/6:134323928 | SLC2A12 | (0.58, -0.011, P = 2.4e-06, N = 7824) | (0.49, -0.062, P = 0.2, N = 859) |
rs13203202(T)/6:25582771 | LRRC16A | (0.58, 0.011, P = 9.3e-06, N = 7824) | (0.48, -0.0018, P = 0.97, N = 859) |
rs9328361(T)/6:6400475* | LY86-AS1 | (0.14, -0.014, P = 3.5e-05, N = 7824) | (0.14, -0.021, P = 0.76, N = 859) |
rs1125083(T)/6:73572090* | KCNQ5 | (0.8, -0.013, P = 3.7e-05, N = 7824) | (0.84, 0.049, P = 0.46, N = 859) |
rs12532734(A)/7:107472382* | intergenic | (0.2, -0.013, P = 3.5e-05, N = 7824) | (0.12, 0.048, P = 0.53, N = 859) |
rs5009270(A)/7:112159178* | NPM1P14 | (0.31, 0.011, P = 1.7e-05, N = 7824) | (0.5, 0.1, P = 0.036, N = 859) |
rs7789056(A)/7:112908269 | intergenic | (0.56, 0.01, P = 3.8e-05, N = 7824) | (0.52, -0.0018, P = 0.97, N = 859) |
rs12534184(A)/7:123651077* | RP4-630C24.3 | (0.11, -0.016, P = 4e-05, N = 7824) | (0.19, -0.075, P = 0.21, N = 859) |
rs9655907(A)/7:137817625* | intergenic | (0.97, 0.05, P = 3.1e-05, N = 7824) | (0.79, -0.0076, P = 0.9, N = 859) |
rs17557000(A)/7:151707893 | GALNTL5 | (0.63, -0.01, P = 3.3e-05, N = 7824) | (0.76, -0.092, P = 0.1, N = 859) |
rs6464427(T)/7:154147779 | DPP6 | (0.19, 0.013, P = 4.3e-05, N = 7824) | (0.48, -0.1, P = 0.03, N = 859) |
rs6951820(A)/7:154381783* | DPP6 | (0.43, 0.011, P = 4.8e-06, N = 7824) | (0.23, 0.076, P = 0.18, N = 859) |
rs117039120(T)/7:20607573 | intergenic | (0.17, 0.15, P = 2.1e-07, N = 1959) | (0.038, -0.23, P = 0.056, N = 859) |
rs6974377(C)/7:21397405 | intergenic | (0.32, -0.37, P = 1.7e-06, N = 1959) | (0.24, 0.026, P = 0.66, N = 859) |
rs10275982(A)/7:27953981 | JAZF1 | (0.35, -0.01, P = 2.2e-05, N = 7824) | (0.17, -0.14, P = 0.038, N = 859) |
rs1123227(A)/7:42496495* | intergenic | (0.76, 0.017, P = 9.8e-06, N = 7824) | (0.84, 0.11, P = 0.12, N = 859) |
rs983498(C)/7:53113752* | intergenic | (0.71, -0.02, P = 8e-06, N = 7824) | (0.78, -0.018, P = 0.75, N = 859) |
rs3211913(G)/7:80294604 | CD36 | (0.022, -0.36, P = 5.1e-06, N = 1959) | (0.33, -0.027, P = 0.61, N = 859) |
rs17635249(C)/8:49806968 | intergenic | (0.36, 0.01, P = 3.9e-05, N = 7824) | (0.26, 0.035, P = 0.53, N = 859) |
rs182914(T)/8:50060960* | intergenic | (0.47, -0.0098, P = 4.6e-05, N = 7824) | (0.32, -0.079, P = 0.13, N = 859) |
rs17370395(A)/9:105976900 | RP11-341A22.2 | (0.93, 0.047, P = 2e-05, N = 7824) | (0.92, 0.018, P = 0.84, N = 859) |
rs11573691(T)/9:110081653 | RAD23B | (0.094, -0.28, P = 5.4e-06, N = 1959) | (0.015, -0.088, P = 0.65, N = 859) |
rs12349613(T)/9:117607806* | RP11-78H18.2 | (0.055, 0.034, P = 5.6e-06, N = 7824) | (0.18, -0.056, P = 0.36, N = 859) |
rs3012739(A)/9:134654306* | EIF4A1P3 | (0.48, 0.012, P = 2.1e-06, N = 7824) | (0.22, -0.0098, P = 0.86, N = 859) |
rs4240706(A)/9:137669555 | COL5A1 | (0.015, -0.1, P = 1.9e-05, N = 7824) | (0.25, -0.024, P = 0.67, N = 859) |
rs10964319(T)/9:1994871* | intergenic | (0.097, -0.017, P = 4.7e-05, N = 7824) | (0.21, -0.008, P = 0.9, N = 859) |
rs10971687(T)/9:33761112* | PRSS3 | (0.37, -0.01, P = 1.8e-05, N = 7824) | (0.13, 0.21, P = 0.0034, N = 859) |
rs2297442(T)/9:6540540 | GLDC | (0.7, 0.011, P = 2.9e-05, N = 7824) | (0.83, 0.041, P = 0.53, N = 859) |
rs952045(T)/9:73161881 | TRPM3 | (0.95, 0.025, P = 7.3e-06, N = 7824) | (0.77, -0.046, P = 0.42, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 119 | 0.014 (-0.072- 0.1) P=0.75 | 15 | 80 | 0.00117 (0- 97.3) | NA | NA | 0.0028 P=0.69 |
MR-Egger | 119 | 0.0051 (-0.091- 0.1) P=0.92 | 15 | 80 | 0.00117 (0- 97.3) | 149 | 0.024 | 0.0028 P=0.69 |
Weighted median | 119 | -0.027 (-0.13- 0.077) P=0.61 | 15 | 80 | 0.00117 (0- 97.3) | NA | NA | 0.0028 P=0.69 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.01 | 0.04 | 0.32 | 0.75 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 61 | 0.003 (-0.068- 0.074) P=0.93 | 27 | 73 | 0 (0- 45) | NA | NA | 0.0054 P=0.57 |
MR-Egger | 61 | -0.011 (-0.1- 0.081) P=0.81 | 27 | 73 | 0 (0- 45) | 49 | 0.82 | 0.0054 P=0.57 |
Weighted median | 61 | -0.03 (-0.13- 0.072) P=0.56 | 27 | 73 | 0 (0- 45) | NA | NA | 0.0054 P=0.57 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0 | 0.04 | 0.08 | 0.93 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Hippuric acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs520229(T)/1:78876209 | PTGFR | (0.69, -0.15, P = 3.4e-06, N = 1956) | (0.58, -0.021, P = 0.67, N = 859) |
rs12410147(T)/1:94289120 | BCAR3 | (0.071, 0.23, P = 8e-06, N = 1956) | (0.16, 0.083, P = 0.22, N = 859) |
rs10786630(C)/10:103075639 | RP11-107I14.2 | (0.65, 0.19, P = 7.8e-07, N = 1956) | (0.28, 0.12, P = 0.023, N = 859) |
rs282692(C)/10:60655066 | intergenic | (0.78, -0.19, P = 9e-06, N = 1956) | (0.4, 0.017, P = 0.73, N = 859) |
rs9518260(C)/13:101632306 | NALCN-AS1 | (0.27, -0.16, P = 9.9e-07, N = 1956) | (0.097, -0.019, P = 0.81, N = 859) |
rs420176(C)/13:111216902 | RAB20 | (0.93, 0.34, P = 4.2e-06, N = 1956) | (0.75, -0.051, P = 0.37, N = 859) |
rs2045930(G)/15:74100160 | intergenic | (0.46, 0.15, P = 8e-07, N = 1956) | (0.098, -0.069, P = 0.39, N = 859) |
rs4553581(C)/15:74194348 | intergenic | (0.56, 0.17, P = 3e-08, N = 1956) | (0.33, 0.037, P = 0.45, N = 859) |
rs12935540(T)/16:48586557 | N4BP1 | (0.29, -0.16, P = 3.4e-06, N = 1956) | (0.41, -0.013, P = 0.79, N = 859) |
rs3095573(G)/16:53377003* | intergenic | (0.35, 0.15, P = 9.2e-06, N = 1956) | (0.11, -0.041, P = 0.59, N = 859) |
rs10195231(G)/2:121152012 | intergenic | (0.48, 0.14, P = 5.2e-06, N = 1956) | (0.88, 0.09, P = 0.21, N = 859) |
rs6053232(G)/20:5241396 | intergenic | (0.72, -0.19, P = 3.4e-06, N = 1956) | (0.88, 0.14, P = 0.062, N = 859) |
rs77077232(A)/3:125463283 | OR7E97P | (0.039, -0.37, P = 4e-06, N = 1956) | (0.38, 0.0089, P = 0.85, N = 859) |
rs745168(A)/3:194325010 | TMEM44 | (0.32, 0.09, P = 8.9e-06, N = 1956) | (0.29, 0.0077, P = 0.89, N = 859) |
rs1452177(T)/3:83496775* | intergenic | (0.5, -0.17, P = 1.9e-06, N = 1956) | (0.49, 0.074, P = 0.12, N = 859) |
rs11730547(G)/4:117903947 | intergenic | (0.1, -0.32, P = 1.8e-07, N = 1956) | (0.16, 0.11, P = 0.097, N = 859) |
rs7682799(C)/4:118010613* | TRAM1L1 | (0.11, -0.34, P = 2.6e-08, N = 1956) | (0.18, 0.011, P = 0.87, N = 859) |
rs11791193(A)/9:117084020 | ORM1 | (0.14, 0.26, P = 6.6e-07, N = 1956) | (0.024, -0.046, P = 0.77, N = 859) |
rs7029058(T)/9:84233764 | TLE1 | (0.36, -0.13, P = 4.1e-06, N = 1956) | (0.61, 0.063, P = 0.21, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 19 | -0.05 (-0.18- 0.079) P=0.45 | 25 | 24 | 6.24 (0- 66.7) | NA | NA | 0.019 P=0.64 |
MR-Egger | 19 | -0.13 (-0.48- 0.22) P=0.48 | 25 | 24 | 6.24 (0- 66.7) | 20 | 0.25 | 0.019 P=0.64 |
Weighted median | 19 | -0.03 (-0.21- 0.15) P=0.75 | 25 | 24 | 6.24 (0- 66.7) | NA | NA | 0.019 P=0.64 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.05 | 0.07 | -0.76 | 0.46 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 16 | -0.027 (-0.17- 0.12) P=0.72 | 23 | 19 | 20 (0- 71.8) | NA | NA | 0.037 P=0.41 |
MR-Egger | 16 | -0.18 (-0.58- 0.21) P=0.37 | 23 | 19 | 20 (0- 71.8) | 18 | 0.22 | 0.037 P=0.41 |
Weighted median | 16 | -0.046 (-0.25- 0.16) P=0.66 | 23 | 19 | 20 (0- 71.8) | NA | NA | 0.037 P=0.41 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.03 | 0.08 | -0.36 | 0.73 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Indoxyl sulfate (Shin et al/Long et al) | eGFR (CSSCD) |
rs6679229(G)/1:15914078* | AGMAT | (0.3, -0.18, P = 2.1e-06, N = 1954) | (0.27, -0.0022, P = 0.97, N = 859) |
rs4587548(C)/1:195834979* | intergenic | (0.62, 0.015, P = 2.5e-05, N = 7339) | (0.16, 0.05, P = 0.46, N = 859) |
rs4288539(A)/1:25282993* | RUNX3 | (0.61, -0.015, P = 2.1e-05, N = 7339) | (0.89, 0.096, P = 0.23, N = 859) |
rs1564485(A)/1:53621628* | intergenic | (0.48, 0.016, P = 7.8e-06, N = 7339) | (0.56, -0.0031, P = 0.95, N = 859) |
rs7095620(A)/10:114448218* | VTI1A | (0.31, -0.016, P = 2.7e-05, N = 7339) | (0.68, 0.05, P = 0.35, N = 859) |
rs12217409(A)/10:129707769 | PTPRE | (0.14, -0.27, P = 3e-06, N = 1954) | (0.31, 0.085, P = 0.1, N = 859) |
rs7100757(C)/10:73325757 | CDH23 | (0.46, 0.15, P = 4.6e-06, N = 1954) | (0.62, -0.027, P = 0.58, N = 859) |
rs4937006(C)/11:125252738 | PKNOX2 | (0.075, 0.036, P = 3.2e-05, N = 7339) | (0.17, -0.071, P = 0.27, N = 859) |
rs527140(A)/11:57500134* | TMX2 | (0.75, -0.033, P = 6.8e-06, N = 1758) | (0.77, -0.055, P = 0.33, N = 859) |
rs1283170(A)/12:52423179 | NR4A1 | (0.3, -0.03, P = 2.7e-05, N = 1758) | (0.32, -0.055, P = 0.3, N = 859) |
rs7327909(A)/13:100505367* | CLYBL | (0.39, 0.016, P = 1.3e-05, N = 7339) | (0.27, -0.057, P = 0.31, N = 859) |
rs9508849(A)/13:20261939* | PSPC1 | (0.95, 0.076, P = 3.4e-05, N = 1758) | (0.71, 0.031, P = 0.57, N = 859) |
rs4363758(T)/13:77386392* | intergenic | (0.23, 0.018, P = 2.3e-05, N = 7339) | (0.2, 0.0031, P = 0.96, N = 859) |
rs7161167(A)/14:29740046 | RP11-562L8.1 | (0.051, -0.036, P = 1.6e-05, N = 7339) | (0.2, 0.096, P = 0.12, N = 859) |
rs2765904(T)/14:85289193 | intergenic | (0.51, -0.015, P = 4e-05, N = 7339) | (0.19, 0.012, P = 0.84, N = 859) |
rs12599018(C)/16:6085186 | RBFOX1 | (0.19, -0.021, P = 2.6e-05, N = 7339) | (0.29, -0.038, P = 0.48, N = 859) |
rs12597663(A)/16:66396875* | CDH5 | (0.63, 0.015, P = 4.4e-05, N = 7339) | (0.42, -0.012, P = 0.81, N = 859) |
rs3907371(T)/18:69684916 | intergenic | (0.65, -0.03, P = 1.1e-05, N = 1758) | (0.62, -0.038, P = 0.46, N = 859) |
rs7937(T)/19:41302706* | EGLN2 | (0.56, -0.015, P = 1.9e-05, N = 7339) | (0.31, -0.028, P = 0.61, N = 859) |
rs373996356(G)/19:429599 | SHC2 | (0.011, -0.56, P = 7.5e-06, N = 1954) | (0.061, -0.05, P = 0.63, N = 859) |
rs17043547(A)/2:115539056 | DPP10 | (0.012, -0.079, P = 4.9e-06, N = 7339) | (0.036, -0.011, P = 0.93, N = 859) |
rs1179644(A)/2:217796770* | AC007563.5 | (0.93, 0.029, P = 2.6e-05, N = 7339) | (0.49, 0.012, P = 0.8, N = 859) |
rs7261614(T)/20:17604260* | RRBP1 | (0.24, 0.034, P = 1.3e-05, N = 1758) | (0.65, -0.029, P = 0.57, N = 859) |
rs12480161(T)/20:40389664* | intergenic | (0.75, -0.032, P = 4.1e-05, N = 1758) | (0.83, -0.018, P = 0.79, N = 859) |
rs7262150(C)/20:62354494 | ZGPAT | (0.21, 0.24, P = 4.8e-06, N = 1954) | (0.078, 0.033, P = 0.72, N = 859) |
rs9863394(T)/3:125456532* | OR7E53P | (0.059, 0.037, P = 2.5e-05, N = 7339) | (0.41, -0.0057, P = 0.91, N = 859) |
rs7631707(A)/3:20300268* | intergenic | (0.56, 0.015, P = 2.9e-05, N = 7339) | (0.59, -0.089, P = 0.077, N = 859) |
rs17024808(T)/4:134386587* | intergenic | (0.63, 0.015, P = 4.2e-05, N = 7339) | (0.4, 0.066, P = 0.18, N = 859) |
rs10031835(T)/4:136087584* | intergenic | (0.7, -0.034, P = 5.8e-06, N = 1758) | (0.9, 0.068, P = 0.4, N = 859) |
rs295224(T)/4:161227411* | intergenic | (0.41, -0.017, P = 2.4e-05, N = 7339) | (0.26, -0.015, P = 0.79, N = 859) |
rs77431462(T)/4:174899979 | RP11-161D15.3 | (0.74, -0.12, P = 8.6e-06, N = 1954) | (0.55, 0.0067, P = 0.89, N = 859) |
rs13145712(T)/4:62041029* | intergenic | (0.73, -0.034, P = 4.1e-05, N = 1758) | (0.89, -0.12, P = 0.14, N = 859) |
rs2090189(T)/4:64337600* | RP11-12K22.1 | (0.4, 0.015, P = 1.6e-05, N = 7339) | (0.36, 0.093, P = 0.058, N = 859) |
rs698172(A)/5:127154927 | CTC-228N24.1 | (0.42, -0.015, P = 3.4e-05, N = 7339) | (0.15, 0.018, P = 0.79, N = 859) |
rs1039438(A)/5:156476770* | HAVCR1 | (0.28, -0.019, P = 1e-05, N = 7339) | (0.15, -0.011, P = 0.87, N = 859) |
rs13361283(T)/5:169722546 | LCP2 | (0.92, 0.057, P = 1.8e-05, N = 1758) | (0.9, -0.091, P = 0.26, N = 859) |
rs2927892(A)/6:120659453 | intergenic | (0.27, -0.018, P = 3.8e-05, N = 7339) | (0.23, 0.012, P = 0.83, N = 859) |
rs9489956(T)/6:120781346* | intergenic | (0.78, 0.04, P = 5.3e-07, N = 1758) | (0.75, -0.0097, P = 0.86, N = 859) |
rs11758810(T)/6:155418671 | TIAM2 | (0.38, 0.16, P = 1.9e-06, N = 1954) | (0.26, 0.021, P = 0.72, N = 859) |
rs9379897(T)/6:26601526* | ABT1 | (0.87, -0.026, P = 2e-06, N = 7339) | (0.86, 0.021, P = 0.77, N = 859) |
rs3847067(A)/7:100500615* | RN7SL549P | (0.29, -0.032, P = 6.7e-06, N = 1758) | (0.096, -0.05, P = 0.53, N = 859) |
rs2273933(T)/9:14313712* | NFIB | (0.1, 0.026, P = 3.7e-05, N = 7339) | (0.56, 0.0099, P = 0.84, N = 859) |
rs7855409(T)/9:24296518 | intergenic | (0.01, -0.58, P = 8.5e-06, N = 1954) | (0.022, -0.23, P = 0.17, N = 859) |
rs943628(T)/9:293360* | DOCK8 | (0.26, 0.018, P = 4.2e-05, N = 7339) | (0.34, 0.039, P = 0.45, N = 859) |
rs7858948(A)/9:89621759* | CDC20P1 | (0.011, -0.13, P = 3.5e-05, N = 1758) | (0.3, -0.091, P = 0.082, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 45 | 0.032 (-0.12- 0.19) P=0.68 | 4.8 | 10 | 2.69 (0- 30.2) | NA | NA | 0.0024 P=0.82 |
MR-Egger | 45 | 0.018 (-0.2- 0.23) P=0.87 | 4.8 | 10 | 2.69 (0- 30.2) | 34 | 0.83 | 0.0024 P=0.82 |
Weighted median | 45 | 0.052 (-0.22- 0.33) P=0.71 | 4.8 | 10 | 2.69 (0- 30.2) | NA | NA | 0.0024 P=0.82 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.03 | 0.08 | 0.41 | 0.68 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 17 | -0.022 (-0.19- 0.15) P=0.81 | 9.8 | 8.2 | 5.28 (0- 69.7) | NA | NA | -0.013 P=0.53 |
MR-Egger | 17 | 0.034 (-0.22- 0.29) P=0.8 | 9.8 | 8.2 | 5.28 (0- 69.7) | 12 | 0.67 | -0.013 P=0.53 |
Weighted median | 17 | 0.027 (-0.27- 0.32) P=0.86 | 9.8 | 8.2 | 5.28 (0- 69.7) | NA | NA | -0.013 P=0.53 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.02 | 0.09 | -0.25 | 0.81 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Methylmalonyl carnitine (Shin et al/Long et al) | eGFR (CSSCD) |
rs10999344(A)/10:53525932* | PRKG1 | (0.12, 0.22, P = 9.4e-06, N = 1818) | (0.12, 0.012, P = 0.87, N = 859) |
rs1842830(T)/11:7863201* | RP11-35J10.5 | (0.99, -0.6, P = 6.4e-07, N = 1818) | (0.88, -0.046, P = 0.52, N = 859) |
rs578157537(ATTTTTTT)/12:104366864 | TDG | (0.039, -0.39, P = 3.4e-06, N = 1818) | (0.76, 0.068, P = 0.24, N = 859) |
rs880118(C)/13:112023039* | intergenic | (0.99, -0.47, P = 1.2e-06, N = 1818) | (0.7, 0.016, P = 0.77, N = 859) |
rs1885076(G)/14:27043304 | NOVA1 | (0.62, -0.13, P = 1.4e-06, N = 1818) | (0.15, -0.17, P = 0.013, N = 859) |
rs11890(A)/16:1820992* | NME3 | (0.77, -0.18, P = 8.3e-07, N = 1818) | (0.84, -0.041, P = 0.54, N = 859) |
rs2967147(C)/16:57849280* | CTD-2600O9.1 | (0.079, -0.31, P = 3.6e-06, N = 1818) | (0.26, -0.088, P = 0.097, N = 859) |
rs56720646(A)/18:49036947 | RP11-267C16.1 | (0.06, 0.29, P = 2.7e-06, N = 1818) | (0.12, -0.01, P = 0.89, N = 859) |
rs200472465(C)/2:11956875* | LPIN1 | (0.014, 0.49, P = 5.8e-06, N = 1818) | (0.074, -0.098, P = 0.29, N = 859) |
rs140740345(CA)/2:198092325 | ANKRD44 | (0.22, -0.22, P = 4.9e-06, N = 1818) | (0.82, 0.073, P = 0.25, N = 859) |
rs112638583(T)/2:23341246 | AC016768.1 | (0.016, 0.65, P = 7.4e-06, N = 1818) | (0.022, 0.0055, P = 0.97, N = 859) |
rs1075726(C)/2:23412686* | AC016768.1 | (0.067, 0.35, P = 4.7e-06, N = 1818) | (0.09, 0.12, P = 0.15, N = 859) |
rs1569910(G)/20:54377395* | intergenic | (0.033, -0.37, P = 9.3e-06, N = 1818) | (0.063, -0.17, P = 0.083, N = 859) |
rs4810141(T)/20:57209899 | MGC4294 | (0.58, 0.15, P = 6.2e-06, N = 1818) | (0.41, 0.021, P = 0.67, N = 859) |
rs10077410(A)/5:122450771* | PRDM6 | (0.14, 0.23, P = 6.7e-06, N = 1818) | (0.14, 0.019, P = 0.79, N = 859) |
rs3095825(A)/5:31440389* | DROSHA | (0.82, -0.22, P = 4.4e-06, N = 1818) | (0.92, 0.092, P = 0.31, N = 859) |
rs59448538(G)/6:150631830 | intergenic | (0.26, -0.2, P = 2.9e-07, N = 1818) | (0.32, -0.072, P = 0.15, N = 859) |
rs7810641(C)/7:146979044 | CNTNAP2 | (0.72, -0.17, P = 6.7e-06, N = 1818) | (0.96, -0.14, P = 0.25, N = 859) |
rs4743171(T)/9:100908135 | CORO2A | (0.27, -0.19, P = 6.5e-06, N = 1818) | (0.31, 0.018, P = 0.74, N = 859) |
rs79410245(C)/9:7666483 | intergenic | (0.015, 0.59, P = 7.9e-06, N = 1818) | (0.069, -0.17, P = 0.075, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 20 | 0.02 (-0.09- 0.13) P=0.72 | 21 | 23 | 21.5 (0- 77.6) | NA | NA | 0.07 P=0.095 |
MR-Egger | 20 | -0.18 (-0.42- 0.066) P=0.17 | 21 | 23 | 21.5 (0- 77.6) | 23 | 0.21 | 0.07 P=0.095 |
Weighted median | 20 | -0.01 (-0.15- 0.13) P=0.89 | 21 | 23 | 21.5 (0- 77.6) | NA | NA | 0.07 P=0.095 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.02 | 0.06 | 0.35 | 0.73 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 10 | -0.065 (-0.26- 0.13) P=0.51 | 22 | 12 | 24.1 (0- 91.3) | NA | NA | 0.12 P=0.04 |
MR-Egger | 10 | -0.45 (-0.8- -0.11) P=0.034 | 22 | 12 | 24.1 (0- 91.3) | 8.6 | 0.38 | 0.12 P=0.04 |
Weighted median | 10 | -0.13 (-0.35- 0.093) P=0.26 | 22 | 12 | 24.1 (0- 91.3) | NA | NA | 0.12 P=0.04 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.07 | 0.1 | -0.66 | 0.53 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | myo-Inositol (Shin et al/Long et al) | eGFR (CSSCD) |
rs10875336(T)/1:101241384 | intergenic | (0.61, -0.0073, P = 2.4e-05, N = 7824) | (0.55, -0.14, P = 0.0037, N = 859) |
rs856084(T)/1:158915141* | PYHIN1 | (0.72, 0.0078, P = 1e-05, N = 7824) | (0.92, 0.023, P = 0.8, N = 859) |
rs7544659(A)/1:175647041* | TNR | (0.4, 0.0089, P = 3.1e-07, N = 7824) | (0.47, 0.031, P = 0.52, N = 859) |
rs7556049(C)/1:200138774 | NR5A2 | (0.12, 0.22, P = 5.2e-06, N = 1951) | (0.39, -0.05, P = 0.3, N = 859) |
rs10735491(A)/1:217113278* | ESRRG | (0.45, 0.0072, P = 3.9e-05, N = 7824) | (0.18, 0.037, P = 0.55, N = 859) |
rs12744888(A)/1:229336778 | intergenic | (0.93, -0.02, P = 1.4e-05, N = 7824) | (0.99, -0.055, P = 0.8, N = 859) |
rs4659612(A)/1:236033290* | LYST | (0.74, 0.017, P = 5.9e-06, N = 7824) | (0.72, 0.11, P = 0.045, N = 859) |
rs7541937(T)/1:35341982* | DLGAP3 | (0.46, 0.0079, P = 2.2e-05, N = 7824) | (0.53, -0.05, P = 0.31, N = 859) |
rs12146051(C)/1:46742952 | RAD54L | (0.31, -0.0074, P = 2.8e-05, N = 7824) | (0.059, 0.062, P = 0.54, N = 859) |
rs12077102(C)/1:60183404 | FGGY | (0.012, 0.066, P = 1.9e-05, N = 7824) | (0.14, -0.015, P = 0.83, N = 859) |
rs6584573(C)/10:105570406* | SH3PXD2A | (0.016, 0.032, P = 2.7e-05, N = 7824) | (0.13, -0.11, P = 0.14, N = 859) |
rs11192466(A)/10:107278956* | intergenic | (0.013, 0.069, P = 8.3e-06, N = 7824) | (0.12, -0.084, P = 0.25, N = 859) |
rs11010733(A)/10:19912562* | MALRD1 | (0.025, 0.046, P = 4.1e-05, N = 7824) | (0.19, -0.02, P = 0.75, N = 859) |
rs3004261(A)/10:43491592* | MIR5100 | (0.42, 0.0082, P = 1.8e-06, N = 7824) | (0.33, -0.0069, P = 0.9, N = 859) |
rs10996699(A)/10:53063382 | PRKG1 | (0.77, -0.013, P = 4.4e-05, N = 7824) | (0.94, 0.071, P = 0.47, N = 859) |
rs7071294(G)/10:53396926 | PRKG1 | (0.23, -0.25, P = 2.9e-06, N = 1951) | (0.19, 0.027, P = 0.66, N = 859) |
rs2642588(T)/10:71466578 | intergenic | (0.31, -0.0079, P = 5.8e-06, N = 7824) | (0.52, -0.029, P = 0.55, N = 859) |
rs12266321(T)/10:78777947* | KCNMA1 | (0.99, -0.066, P = 6.1e-06, N = 7824) | (0.97, 0.24, P = 0.097, N = 859) |
rs265455(A)/10:83075585* | intergenic | (0.29, 0.0072, P = 4.5e-05, N = 7824) | (0.39, -0.042, P = 0.39, N = 859) |
rs265487(A)/10:83117262* | intergenic | (0.49, -0.0077, P = 7.6e-06, N = 7824) | (0.26, -0.052, P = 0.33, N = 859) |
rs10502069(A)/11:106316611* | intergenic | (0.73, -0.0078, P = 8.4e-06, N = 7824) | (0.77, 0.12, P = 0.03, N = 859) |
rs1944518(T)/11:120843742* | GRIK4 | (0.31, -0.0086, P = 1.3e-06, N = 7824) | (0.051, -0.18, P = 0.11, N = 859) |
rs2922048(T)/11:41389942 | LRRC4C | (0.66, 0.0071, P = 4.9e-05, N = 7824) | (0.45, -0.0089, P = 0.86, N = 859) |
rs2510500(C)/11:79194246 | intergenic | (0.43, -0.0076, P = 1e-05, N = 7824) | (0.48, 0.034, P = 0.48, N = 859) |
rs12277739(C)/11:87624457* | RP11-665E10.3 | (0.97, -0.046, P = 2.2e-05, N = 7824) | (0.85, 0.046, P = 0.51, N = 859) |
rs7312321(A)/12:120036235* | TMEM233 | (0.35, -0.0072, P = 3.4e-05, N = 7824) | (0.4, -0.067, P = 0.17, N = 859) |
rs9651790(T)/12:129389777 | GLT1D1 | (0.47, -0.0073, P = 2.5e-05, N = 7824) | (0.22, 0.056, P = 0.35, N = 859) |
rs4759824(T)/12:131486985* | GPR133 | (0.68, 0.0083, P = 1.9e-06, N = 7824) | (0.67, -0.038, P = 0.46, N = 859) |
rs10505911(A)/12:24022160* | SOX5 | (0.23, 0.01, P = 3e-05, N = 7824) | (0.33, 0.053, P = 0.31, N = 859) |
rs58671007(ATT)/13:37491536 | SMAD9 | (0.012, 0.44, P = 7.5e-06, N = 1951) | (0.16, -0.042, P = 0.52, N = 859) |
rs12552(A)/13:53625781* | OLFM4 | (0.44, 0.0074, P = 1.5e-05, N = 7824) | (0.4, 0.13, P = 0.0062, N = 859) |
rs9317855(T)/13:70543601* | KLHL1 | (0.35, -0.008, P = 4.3e-06, N = 7824) | (0.42, 0.016, P = 0.74, N = 859) |
rs9529872(T)/13:71875477* | RABEPKP1 | (0.024, 0.048, P = 4.8e-05, N = 7824) | (0.16, -0.012, P = 0.86, N = 859) |
rs1764963(T)/13:86259295 | intergenic | (0.65, -0.008, P = 4.4e-06, N = 7824) | (0.48, -0.054, P = 0.27, N = 859) |
rs1956194(G)/14:59477771* | RP11-112J1.2 | (0.86, -0.21, P = 5.8e-06, N = 1951) | (0.86, 0.059, P = 0.37, N = 859) |
rs6573359(T)/14:61582316 | intergenic | (0.98, 0.048, P = 3.3e-05, N = 7824) | (0.64, 0.0012, P = 0.98, N = 859) |
rs12589229(T)/14:91820675* | CCDC88C | (0.33, 0.0083, P = 2.4e-06, N = 7824) | (0.22, 0.034, P = 0.56, N = 859) |
rs2107582(A)/15:25753469 | AC124997.1 | (0.32, -0.0075, P = 2.2e-05, N = 7824) | (0.42, 7e-05, P = 1, N = 859) |
rs11070699(T)/15:49800789* | FAM227B | (0.65, -0.0075, P = 2e-05, N = 7824) | (0.49, 0.031, P = 0.53, N = 859) |
rs11631036(T)/15:51298925 | AP4E1 | (0.11, -0.24, P = 9.4e-06, N = 1951) | (0.017, -0.2, P = 0.28, N = 859) |
rs72734509(G)/15:76093382 | intergenic | (0.023, 0.55, P = 9.6e-06, N = 1951) | (0.013, -0.092, P = 0.67, N = 859) |
rs1896864(A)/15:85382193 | ALPK3 | (0.65, 0.0075, P = 1.6e-05, N = 7824) | (0.69, -0.078, P = 0.14, N = 859) |
rs7200640(C)/16:12774993 | CPPED1 | (0.88, -0.014, P = 1.6e-05, N = 7824) | (0.93, 0.16, P = 0.078, N = 859) |
rs4788439(T)/16:24931798* | ARHGAP17 | (0.077, -0.027, P = 6.6e-13, N = 7824) | (0.67, -0.1, P = 0.051, N = 859) |
rs16974319(A)/16:25054644* | RP11-266L9.4 | (0.42, -0.0072, P = 3.4e-05, N = 7824) | (0.45, -0.0011, P = 0.98, N = 859) |
rs6500418(T)/16:48876104 | intergenic | (0.37, -0.0079, P = 5.9e-06, N = 7824) | (0.77, -0.039, P = 0.51, N = 859) |
rs17711511(C)/16:80066149 | intergenic | (0.92, -0.015, P = 1.1e-05, N = 7824) | (0.98, 0.083, P = 0.65, N = 859) |
rs4243227(T)/16:82028082 | SDR42E1 | (0.8, 0.011, P = 4e-05, N = 7824) | (0.95, 0.02, P = 0.85, N = 859) |
rs16957235(T)/16:82424223* | intergenic | (0.99, -0.071, P = 4.3e-06, N = 7824) | (0.88, -4.5e-06, P = 1, N = 859) |
rs77193496(T)/17:13106988 | intergenic | (0.035, 0.45, P = 8.7e-06, N = 1951) | (0.097, -0.036, P = 0.66, N = 859) |
rs12942795(A)/17:34995473 | CTB-75G16.3 | (0.64, 0.0099, P = 3.6e-05, N = 7824) | (0.92, 0.0081, P = 0.93, N = 859) |
rs3760124(T)/17:73597919 | MYO15B | (0.31, 0.0074, P = 2.6e-05, N = 7824) | (0.11, -0.2, P = 0.0085, N = 859) |
rs2678795(T)/18:28290604* | RP11-675P14.1 | (0.64, -0.0071, P = 4e-05, N = 7824) | (0.57, 0.0099, P = 0.84, N = 859) |
rs4940346(C)/18:45105566 | CTD-2130O13.1 | (0.13, 0.19, P = 4.7e-06, N = 1951) | (0.31, 0.0093, P = 0.86, N = 859) |
rs9947181(C)/18:45580229 | ZBTB7C | (0.03, -0.028, P = 9.2e-07, N = 7824) | (0.22, -0.1, P = 0.07, N = 859) |
rs411805(T)/18:55298886* | RP11-35G9.3 | (0.47, -0.0071, P = 3.1e-05, N = 7824) | (0.59, -0.11, P = 0.027, N = 859) |
rs9959796(C)/18:64647334* | intergenic | (0.98, 0.029, P = 2.6e-05, N = 7824) | (0.98, -0.025, P = 0.9, N = 859) |
rs722419(A)/19:13360233 | CACNA1A | (0.45, 0.008, P = 4e-06, N = 7824) | (0.31, -0.098, P = 0.062, N = 859) |
rs7251640(T)/19:18614935 | ELL | (0.84, -0.012, P = 1.5e-06, N = 7824) | (0.54, -0.03, P = 0.53, N = 859) |
rs4808136(A)/19:18618867* | ELL | (0.34, 0.013, P = 5.4e-14, N = 7824) | (0.75, -0.089, P = 0.11, N = 859) |
rs34143665(G)/19:18766030 | KLHL26 | (0.21, 0.18, P = 7.1e-06, N = 1951) | (0.034, 0.039, P = 0.77, N = 859) |
rs2160717(T)/19:29822729 | CTC-525D6.1 | (0.4, -0.0087, P = 4.6e-07, N = 7824) | (0.38, 0.028, P = 0.58, N = 859) |
rs8113823(A)/19:46959053 | intergenic | (0.15, -0.028, P = 2.5e-05, N = 7824) | (0.042, 0.035, P = 0.76, N = 859) |
rs1844852(T)/2:117262186 | intergenic | (0.88, -0.17, P = 3.8e-06, N = 1951) | (0.45, -0.07, P = 0.15, N = 859) |
rs1492394(A)/2:141032676 | LRP1B | (0.037, 0.04, P = 2.6e-05, N = 7824) | (0.18, 0.023, P = 0.71, N = 859) |
rs1965407(A)/2:1429277 | TPO | (0.23, -0.017, P = 2.7e-05, N = 7824) | (0.28, 0.11, P = 0.031, N = 859) |
rs4664918(C)/2:158874088 | UPP2 | (0.59, 0.0071, P = 4.7e-05, N = 7824) | (0.27, -0.05, P = 0.36, N = 859) |
rs2060198(A)/2:166245230 | SCN2A | (0.26, -0.017, P = 2.2e-05, N = 7824) | (0.16, 0.095, P = 0.14, N = 859) |
rs62188095(A)/2:184130538 | LIN28AP1 | (0.098, -0.24, P = 4.5e-06, N = 1951) | (0.015, -0.16, P = 0.44, N = 859) |
rs4399682(A)/2:184891621* | intergenic | (0.72, 0.018, P = 2.1e-06, N = 7824) | (0.87, -0.017, P = 0.81, N = 859) |
rs4665191(A)/2:23249712* | AC016768.1 | (0.3, -0.0076, P = 1.7e-05, N = 7824) | (0.75, -0.00067, P = 0.99, N = 859) |
rs4811076(A)/20:49109845* | intergenic | (0.49, -0.0074, P = 1.8e-05, N = 7824) | (0.39, -0.0048, P = 0.92, N = 859) |
rs16996393(A)/20:9753835 | PAK7 | (0.69, -0.0083, P = 3.2e-06, N = 7824) | (0.48, 0.055, P = 0.27, N = 859) |
rs2223728(A)/21:22233992 | intergenic | (0.34, 0.0073, P = 2.5e-05, N = 7824) | (0.26, 0.033, P = 0.54, N = 859) |
rs2832576(T)/21:31431705* | intergenic | (0.86, 0.011, P = 1.5e-05, N = 7824) | (0.68, -0.036, P = 0.48, N = 859) |
rs2834059(A)/21:34375461 | AP000282.2 | (0.48, -0.0091, P = 1e-06, N = 7824) | (0.25, 0.084, P = 0.13, N = 859) |
rs5994710(A)/22:33682273 | LARGE | (0.077, -0.017, P = 1.2e-06, N = 7824) | (0.58, -0.0095, P = 0.85, N = 859) |
rs4431081(T)/3:111482048 | PLCXD2 | (0.45, 0.016, P = 2.2e-06, N = 7824) | (0.83, -0.023, P = 0.73, N = 859) |
rs12491897(A)/3:116356191 | LSAMP | (0.18, -0.01, P = 2.8e-05, N = 7824) | (0.26, 0.00051, P = 0.99, N = 859) |
rs10636873(GGA)/3:158701141 | IQCJ | (0.64, 0.18, P = 8.3e-06, N = 1951) | (0.48, 0.017, P = 0.73, N = 859) |
rs6786880(T)/3:165855100 | intergenic | (0.59, 0.0074, P = 1.9e-05, N = 7824) | (0.39, 0.013, P = 0.79, N = 859) |
rs13092031(A)/3:1719076 | intergenic | (0.64, -0.0073, P = 3e-05, N = 7824) | (0.33, -0.032, P = 0.53, N = 859) |
rs572746052(TAAA)/3:172786606 | SPATA16 | (0.021, -0.12, P = 4.3e-06, N = 1951) | (0.43, -0.019, P = 0.69, N = 859) |
rs12635393(T)/3:187091583* | RTP4 | (0.35, 0.015, P = 3.7e-05, N = 7824) | (0.19, 0.087, P = 0.15, N = 859) |
rs4687367(T)/3:192631798* | MB21D2 | (0.46, 0.0073, P = 3.5e-05, N = 7824) | (0.62, -0.016, P = 0.75, N = 859) |
rs937107(T)/3:22331495* | ZNF385D | (0.019, 0.051, P = 4e-05, N = 7824) | (0.13, 0.12, P = 0.094, N = 859) |
rs3872668(C)/3:314429* | CHL1 | (0.37, -0.018, P = 7.3e-07, N = 7824) | (0.4, -0.0091, P = 0.85, N = 859) |
rs2887159(A)/3:64128189 | PRICKLE2 | (0.085, 0.24, P = 8.7e-06, N = 1951) | (0.15, 0.15, P = 0.026, N = 859) |
rs1899372(A)/3:77385745 | ROBO2 | (0.083, -0.26, P = 7.3e-06, N = 1951) | (0.14, -0.055, P = 0.41, N = 859) |
rs11934095(A)/4:11884262 | intergenic | (0.72, -0.0082, P = 3.1e-06, N = 7824) | (0.49, 0.011, P = 0.83, N = 859) |
rs7678369(A)/4:124525133 | intergenic | (0.74, 0.18, P = 2.7e-06, N = 1951) | (0.41, -0.00038, P = 0.99, N = 859) |
rs200970756(T)/4:19170429 | RP11-3J1.1 | (0.16, 0.23, P = 2.1e-06, N = 1951) | (0.091, 0.082, P = 0.32, N = 859) |
rs11942812(A)/4:26273531 | RBPJ | (0.58, 0.0073, P = 2.9e-05, N = 7824) | (0.46, -0.017, P = 0.72, N = 859) |
rs16879155(T)/4:27304493* | intergenic | (0.017, 0.056, P = 1.9e-05, N = 7824) | (0.15, -0.11, P = 0.1, N = 859) |
rs62294538(T)/4:38989940* | TMEM156 | (0.59, -0.13, P = 8.3e-06, N = 1951) | (0.41, -0.0091, P = 0.86, N = 859) |
rs77437403(A)/4:57725538 | intergenic | (0.035, -0.55, P = 1.2e-06, N = 1951) | (0.019, 0.42, P = 0.014, N = 859) |
rs4690290(C)/4:689502 | intergenic | (0.46, 0.034, P = 2.1e-05, N = 7824) | (0.59, -0.029, P = 0.55, N = 859) |
rs4541491(A)/4:82604912* | RP11-689K5.3 | (0.62, -0.0078, P = 6.6e-06, N = 7824) | (0.63, -0.032, P = 0.53, N = 859) |
rs6893586(T)/5:163508338* | intergenic | (0.43, 0.0072, P = 4e-05, N = 7824) | (0.7, 0.023, P = 0.65, N = 859) |
rs17063000(T)/5:163645278 | CTC-207P7.1 | (0.24, -0.01, P = 1.5e-05, N = 7824) | (0.081, -0.035, P = 0.68, N = 859) |
rs12652381(A)/5:170023542* | KCNIP1 | (0.61, 0.0091, P = 1.6e-07, N = 7824) | (0.91, 0.059, P = 0.47, N = 859) |
rs4131290(A)/5:176780682* | RGS14 | (0.7, -0.013, P = 7.5e-08, N = 7824) | (0.91, -0.16, P = 0.055, N = 859) |
rs13181802(A)/5:55959493 | intergenic | (0.68, 0.0077, P = 1.1e-05, N = 7824) | (0.61, 0.057, P = 0.28, N = 859) |
rs386161(T)/5:57916579* | RAB3C | (0.58, -0.0075, P = 2.3e-05, N = 7824) | (0.82, 0.036, P = 0.56, N = 859) |
rs588527(C)/5:9992296 | intergenic | (0.95, 0.14, P = 7.5e-06, N = 1951) | (0.86, -0.14, P = 0.058, N = 859) |
rs2400108(T)/6:105810450* | PREP | (0.85, 0.01, P = 4.6e-05, N = 7824) | (0.33, -0.042, P = 0.41, N = 859) |
rs12210249(T)/6:110996079 | CDK19 | (0.032, -0.5, P = 5.9e-06, N = 1951) | (0.048, 0.19, P = 0.087, N = 859) |
rs17052573(A)/6:125306814* | RNF217 | (0.63, 0.0072, P = 3.7e-05, N = 7824) | (0.93, 0.045, P = 0.64, N = 859) |
rs9369768(A)/6:13035947* | PHACTR1 | (0.55, -0.007, P = 4.9e-05, N = 7824) | (0.16, 0.035, P = 0.59, N = 859) |
rs2496162(G)/6:13361088 | GFOD1 | (0.55, 0.14, P = 4.2e-06, N = 1951) | (0.62, 0.006, P = 0.91, N = 859) |
rs7758383(A)/6:143169723* | HIVEP2 | (0.51, -0.0074, P = 1.5e-05, N = 7824) | (0.69, 0.084, P = 0.11, N = 859) |
rs2504067(A)/6:152095987* | ESR1 | (0.49, 0.0079, P = 8.3e-06, N = 7824) | (0.43, -0.11, P = 0.026, N = 859) |
rs17083966(T)/6:153698951* | intergenic | (0.02, 0.056, P = 5e-06, N = 7824) | (0.066, 0.12, P = 0.19, N = 859) |
rs11751128(T)/6:155561796* | TIAM2 | (0.29, 0.0072, P = 4e-05, N = 7824) | (0.043, -0.027, P = 0.81, N = 859) |
rs12191236(C)/6:157304918* | ARID1B | (0.69, 0.0083, P = 2.3e-06, N = 7824) | (0.84, -0.051, P = 0.43, N = 859) |
rs7760342(A)/6:45195424 | SUPT3H | (0.5, 0.016, P = 3.9e-06, N = 7824) | (0.22, -0.044, P = 0.45, N = 859) |
rs1265213(A)/6:4521298* | intergenic | (0.8, 0.011, P = 1.1e-05, N = 7824) | (0.77, -0.0085, P = 0.88, N = 859) |
rs6938321(C)/6:88836054 | intergenic | (0.11, 0.19, P = 8.3e-06, N = 1951) | (0.12, 0.057, P = 0.45, N = 859) |
rs57240465(G)/7:125463191 | intergenic | (0.45, -0.16, P = 9.5e-06, N = 1951) | (0.12, 0.03, P = 0.67, N = 859) |
rs7805995(A)/7:146516466 | CNTNAP2 | (0.99, 0.068, P = 2e-05, N = 7824) | (0.37, 0.02, P = 0.68, N = 859) |
rs10480299(T)/7:151405818* | PRKAG2 | (0.72, -0.0077, P = 1.3e-05, N = 7824) | (0.71, -0.024, P = 0.65, N = 859) |
rs12718636(A)/7:52500628* | intergenic | (0.7, -0.0073, P = 2.8e-05, N = 7824) | (0.91, 0.046, P = 0.58, N = 859) |
rs41608(T)/7:82651558 | PCLO | (0.69, 0.0073, P = 2.5e-05, N = 7824) | (0.9, -0.014, P = 0.86, N = 859) |
rs10086673(T)/8:10305317* | intergenic | (0.29, 0.0089, P = 5.3e-07, N = 7824) | (0.32, -0.025, P = 0.63, N = 859) |
rs7837995(T)/8:11485820 | intergenic | (0.45, 0.0089, P = 4.3e-07, N = 7824) | (0.76, 0.0034, P = 0.95, N = 859) |
rs10112981(A)/8:114965243* | Y_RNA | (0.29, -0.008, P = 6.1e-06, N = 7824) | (0.48, 0.011, P = 0.82, N = 859) |
rs2466216(G)/8:22775716* | PEBP4 | (0.22, 0.21, P = 2.4e-06, N = 1951) | (0.034, -0.094, P = 0.48, N = 859) |
rs2726955(T)/8:27797374* | SCARA5 | (0.65, 0.0071, P = 4.9e-05, N = 7824) | (0.59, -0.089, P = 0.071, N = 859) |
rs6997739(C)/8:51365291 | SNTG1 | (0.2, -0.01, P = 1.9e-05, N = 7824) | (0.78, 0.052, P = 0.36, N = 859) |
rs1483643(A)/8:51459757* | SNTG1 | (0.13, -0.011, P = 3.6e-05, N = 7824) | (0.42, -0.028, P = 0.56, N = 859) |
rs6995644(A)/8:63635874 | NKAIN3 | (0.87, -0.011, P = 4e-05, N = 7824) | (0.36, 0.14, P = 0.0071, N = 859) |
rs3885979(T)/8:70767051* | RP11-159H10.1 | (0.093, -0.013, P = 4.9e-05, N = 7824) | (0.26, -0.046, P = 0.4, N = 859) |
rs3104992(A)/8:96572791 | KB-1047C11.2 | (0.34, 0.0074, P = 2.2e-05, N = 7824) | (0.49, 0.073, P = 0.12, N = 859) |
rs2807592(T)/9:126893436 | intergenic | (0.7, -0.0081, P = 4.5e-06, N = 7824) | (0.94, -0.11, P = 0.29, N = 859) |
rs16936951(A)/9:18657061 | ADAMTSL1 | (0.94, -0.015, P = 4.4e-05, N = 7824) | (0.95, 0.035, P = 0.76, N = 859) |
rs10491883(C)/9:28562256 | LINGO2 | (0.16, -0.21, P = 8.8e-06, N = 1951) | (0.27, -0.0081, P = 0.88, N = 859) |
rs744093(A)/9:32700942 | intergenic | (0.89, -0.024, P = 8.5e-06, N = 7824) | (0.99, -0.25, P = 0.21, N = 859) |
rs11144033(A)/9:77258265 | RORB | (0.57, 0.0072, P = 2.8e-05, N = 7824) | (0.74, -0.055, P = 0.32, N = 859) |
rs10867301(A)/9:81528270 | intergenic | (0.34, -0.0077, P = 1.2e-05, N = 7824) | (0.35, 0.036, P = 0.47, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 139 | -0.041 (-0.16- 0.079) P=0.51 | 4.4 | 29 | 0.000591 (0- 92.3) | NA | NA | -0.0032 P=0.62 |
MR-Egger | 139 | -0.024 (-0.16- 0.11) P=0.74 | 4.4 | 29 | 0.000591 (0- 92.3) | 164 | 0.06 | -0.0032 P=0.62 |
Weighted median | 139 | -0.081 (-0.25- 0.09) P=0.35 | 4.4 | 29 | 0.000591 (0- 92.3) | NA | NA | -0.0032 P=0.62 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.04 | 0.06 | -0.67 | 0.51 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 76 | -0.029 (-0.15- 0.095) P=0.65 | 6.8 | 25 | 2.05 (0- 94.8) | NA | NA | -0.0081 P=0.37 |
MR-Egger | 76 | 0.0087 (-0.14- 0.16) P=0.91 | 6.8 | 25 | 2.05 (0- 94.8) | 88 | 0.13 | -0.0081 P=0.37 |
Weighted median | 76 | -0.076 (-0.25- 0.096) P=0.39 | 6.8 | 25 | 2.05 (0- 94.8) | NA | NA | -0.0081 P=0.37 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.03 | 0.06 | -0.46 | 0.65 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Kynurenic acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs61825638(T)/1:241713402 | KMO | (0.24, 0.31, P = 2.3e-16, N = 1958) | (0.055, 0.021, P = 0.83, N = 859) |
rs1499662(C)/1:56057849* | RP11-466L17.1 | (0.86, -0.22, P = 9e-06, N = 1958) | (0.62, 0.017, P = 0.73, N = 859) |
rs2114406(G)/10:90033593* | RNLS | (0.34, -0.19, P = 3.8e-08, N = 1958) | (0.17, 0.037, P = 0.56, N = 859) |
rs112927155(TAATGGATGTC)/11:58668376 | AP001652.1 | (0.77, 0.1, P = 9.5e-06, N = 1958) | (0.6, -0.046, P = 0.35, N = 859) |
rs11531036(A)/12:21241016 | SLCO1B7 | (0.017, 0.6, P = 5.1e-06, N = 1958) | (0.058, -0.21, P = 0.039, N = 859) |
rs10784757(A)/12:69508022* | AC139931.1 | (0.74, 0.19, P = 6.4e-06, N = 1958) | (0.6, 0.029, P = 0.55, N = 859) |
rs2391396(T)/13:107626059 | AL354741.1 | (0.51, -0.16, P = 5.9e-07, N = 1958) | (0.33, 0.013, P = 0.81, N = 859) |
rs1333184(T)/13:107643612 | intergenic | (0.5, -0.15, P = 7.7e-06, N = 1958) | (0.3, 0.057, P = 0.28, N = 859) |
rs9597397(C)/13:56963440* | intergenic | (0.19, 0.19, P = 6.7e-06, N = 1958) | (0.068, 0.14, P = 0.16, N = 859) |
rs9517419(C)/13:99373101 | SLC15A1 | (0.11, -0.28, P = 5.5e-06, N = 1958) | (0.21, 0.039, P = 0.51, N = 859) |
rs8054775(T)/16:58793570* | RP11-410D17.2 | (0.11, 0.22, P = 4.1e-21, N = 1958) | (0.4, -0.11, P = 0.024, N = 859) |
rs11864685(T)/16:58805130* | RP11-410D17.2 | (0.12, 0.42, P = 5.1e-22, N = 1958) | (0.39, -0.092, P = 0.055, N = 859) |
rs200341493(AT)/17:2808176 | RAP1GAP2 | (0.071, 0.25, P = 6.2e-06, N = 1958) | (0.056, -0.057, P = 0.58, N = 859) |
rs57861026(G)/3:76996620 | ROBO2 | (0.059, 0.41, P = 2e-06, N = 1958) | (0.04, 0.081, P = 0.51, N = 859) |
rs113677552(G)/4:56843171* | CEP135 | (0.011, 0.85, P = 6.1e-06, N = 1958) | (0.014, 0.12, P = 0.55, N = 859) |
rs17208191(G)/5:13846802* | DNAH5 | (0.15, 0.18, P = 9.7e-06, N = 1958) | (0.14, 0.032, P = 0.63, N = 859) |
rs546403634(CCCG)/6:151186857 | MTHFD1L | (0.082, 0.25, P = 2.5e-06, N = 1958) | (0.98, 0.31, P = 0.076, N = 859) |
rs2342637(T)/6:169020665* | SMOC2 | (0.69, -0.2, P = 6e-06, N = 1958) | (0.54, -0.011, P = 0.81, N = 859) |
rs862427(C)/6:38843970 | DNAH8 | (0.88, 0.22, P = 4e-06, N = 1958) | (0.88, -0.071, P = 0.33, N = 859) |
rs12533147(G)/7:4200552 | SDK1 | (0.51, -0.13, P = 4.3e-06, N = 1958) | (0.21, 0.075, P = 0.21, N = 859) |
rs112860567(C)/8:11273641 | C8orf12 | (0.13, 0.25, P = 5.8e-06, N = 1958) | (0.19, 0.005, P = 0.94, N = 859) |
rs7014584(A)/8:59886072 | TOX | (0.92, -0.3, P = 5.3e-07, N = 1958) | (0.98, 0.041, P = 0.83, N = 859) |
rs140664372(T)/8:99851438 | STK3 | (0.016, 0.83, P = 8.6e-07, N = 1958) | (0.037, -0.058, P = 0.65, N = 859) |
rs12350923(T)/9:8189408 | intergenic | (0.093, 0.27, P = 7.3e-06, N = 1958) | (0.11, 0.15, P = 0.052, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 24 | -0.1 (-0.21- 0.0038) P=0.059 | 29 | 35 | 6.51 (0- 63.7) | NA | NA | -0.0028 P=0.93 |
MR-Egger | 24 | -0.093 (-0.33- 0.14) P=0.45 | 29 | 35 | 6.51 (0- 63.7) | 25 | 0.27 | -0.0028 P=0.93 |
Weighted median | 24 | -0.079 (-0.23- 0.071) P=0.3 | 29 | 35 | 6.51 (0- 63.7) | NA | NA | -0.0028 P=0.93 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.1 | 0.05 | -1.89 | 0.07 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 15 | -0.095 (-0.24- 0.053) P=0.21 | 28 | 21 | 5.73 (0- 74) | NA | NA | -0.02 P=0.63 |
MR-Egger | 15 | -0.032 (-0.33- 0.26) P=0.83 | 28 | 21 | 5.73 (0- 74) | 15 | 0.3 | -0.02 P=0.63 |
Weighted median | 15 | -0.078 (-0.29- 0.13) P=0.47 | 28 | 21 | 5.73 (0- 74) | NA | NA | -0.02 P=0.63 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.1 | 0.08 | -1.26 | 0.23 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-Kynurenine (Shin et al/Long et al) | eGFR (CSSCD) |
rs1530683(G)/1:104990673* | intergenic | (0.87, -0.2, P = 7.5e-06, N = 1955) | (0.78, -0.059, P = 0.32, N = 859) |
rs6702848(T)/1:11453577* | intergenic | (0.6, 0.0077, P = 1.1e-05, N = 7824) | (0.5, 0.013, P = 0.79, N = 859) |
rs21327(A)/1:146528521* | NBPF13P | (0.29, 0.0095, P = 1.2e-07, N = 7824) | (0.15, -0.0038, P = 0.95, N = 859) |
rs7549498(A)/1:182363623* | GLUL | (0.44, 0.16, P = 3.8e-06, N = 1955) | (0.75, 0.022, P = 0.68, N = 859) |
rs1687113(T)/1:238082623* | RP11-193H5.1 | (0.23, 0.19, P = 5.9e-06, N = 1955) | (0.66, 0.11, P = 0.037, N = 859) |
rs12082398(T)/1:25234781 | RUNX3 | (0.59, 0.012, P = 9.3e-07, N = 7824) | (0.11, 0.058, P = 0.44, N = 859) |
rs7548008(A)/1:43202095* | CLDN19 | (0.5, 0.016, P = 3.6e-06, N = 7824) | (0.59, 0.12, P = 0.016, N = 859) |
rs9436977(G)/1:56122967 | RP11-466L17.1 | (0.035, -0.39, P = 6.4e-06, N = 1955) | (0.4, -0.03, P = 0.53, N = 859) |
rs2375475(T)/1:65211843 | RAVER2 | (0.32, -0.0084, P = 1.4e-06, N = 7824) | (0.78, -0.022, P = 0.71, N = 859) |
rs274588(G)/1:74942672 | FPGT-TNNI3K | (0.58, 0.14, P = 4.5e-06, N = 1955) | (0.46, 0.0035, P = 0.94, N = 859) |
rs669764(T)/1:78691660* | RP11-183M13.1 | (0.32, -0.0078, P = 7.7e-06, N = 7824) | (0.63, -0.018, P = 0.71, N = 859) |
rs11162752(A)/1:80060337* | intergenic | (0.6, -0.0077, P = 8.1e-06, N = 7824) | (0.37, -0.033, P = 0.51, N = 859) |
rs2491294(A)/1:88302604* | intergenic | (0.31, -0.01, P = 5.7e-07, N = 7824) | (0.26, 0.02, P = 0.71, N = 859) |
rs7906282(T)/10:19083596* | intergenic | (0.31, 0.0094, P = 8.1e-08, N = 7824) | (0.25, 0.00041, P = 0.99, N = 859) |
rs16924894(A)/10:24845525* | intergenic | (0.024, 0.081, P = 2.3e-08, N = 7824) | (0.083, -0.14, P = 0.12, N = 859) |
rs11593042(A)/10:6933467* | RP11-799O21.2 | (0.092, 0.015, P = 4.5e-06, N = 7824) | (0.016, -0.28, P = 0.16, N = 859) |
rs12802337(A)/11:55531892* | intergenic | (0.078, -0.016, P = 6e-06, N = 7824) | (0.16, -0.086, P = 0.17, N = 859) |
rs511797(A)/11:95895139 | MAML2 | (0.13, 0.012, P = 3.8e-06, N = 7824) | (0.024, -0.073, P = 0.64, N = 859) |
rs3184504(T)/12:111884608* | SH2B3 | (0.49, 0.015, P = 6e-18, N = 7824) | (0.073, -0.03, P = 0.74, N = 859) |
rs10744774(A)/12:112090022* | BRAP | (0.83, 0.012, P = 2.4e-06, N = 7824) | (0.98, -0.14, P = 0.37, N = 859) |
rs739744(T)/12:113185462 | RPH3A | (0.55, -0.0082, P = 1.9e-06, N = 7824) | (0.46, -0.052, P = 0.3, N = 859) |
rs11057695(T)/12:125083336* | intergenic | (0.057, 0.021, P = 8e-06, N = 7824) | (0.016, -0.25, P = 0.19, N = 859) |
rs3789978(A)/12:32947193* | PKP2 | (0.85, 0.012, P = 1.3e-06, N = 7824) | (0.67, 0.088, P = 0.083, N = 859) |
rs28815546(T)/12:622231 | B4GALNT3 | (0.026, 0.48, P = 1.2e-06, N = 1955) | (0.3, 0.12, P = 0.022, N = 859) |
rs3809198(A)/12:96883306* | C12orf55 | (0.02, 0.055, P = 4.3e-06, N = 7824) | (0.078, -0.15, P = 0.082, N = 859) |
rs9533582(A)/13:44250866* | ENOX1 | (0.035, -0.022, P = 1e-05, N = 7824) | (0.13, 0.0072, P = 0.92, N = 859) |
rs2324935(A)/13:66985241 | PCDH9 | (0.53, 0.0075, P = 1.5e-05, N = 7824) | (0.73, -0.02, P = 0.71, N = 859) |
rs1952337(A)/14:67608948 | GPHN | (0.64, -0.0076, P = 1.2e-05, N = 7824) | (0.15, 0.025, P = 0.71, N = 859) |
rs434943(A)/14:69314059* | RN7SL224P | (0.32, -0.0077, P = 1.5e-05, N = 7824) | (0.14, -0.086, P = 0.23, N = 859) |
rs6575634(T)/14:98248954* | RP11-204N11.2 | (0.62, -0.016, P = 4.8e-06, N = 7824) | (0.38, -0.039, P = 0.42, N = 859) |
rs2651516(T)/15:53302309* | intergenic | (0.66, 0.008, P = 4.3e-06, N = 7824) | (0.19, -0.063, P = 0.29, N = 859) |
rs11646849(A)/16:82817251* | CDH13 | (0.5, -0.0086, P = 6.4e-07, N = 7824) | (0.29, -0.073, P = 0.16, N = 859) |
rs8063871(A)/16:87863500* | SLC7A5 | (0.71, 0.017, P = 4.7e-12, N = 7824) | (0.69, -0.065, P = 0.21, N = 859) |
rs8051149(A)/16:87878822* | SLC7A5 | (0.21, 0.026, P = 9.1e-26, N = 7824) | (0.6, 0.045, P = 0.36, N = 859) |
rs2434860(T)/16:89696217 | DPEP1 | (0.41, 0.26, P = 1.1e-07, N = 1955) | (0.16, 0.058, P = 0.39, N = 859) |
rs164746(A)/16:89709019* | DPEP1 | (0.41, 0.19, P = 7.8e-08, N = 1955) | (0.19, 0.022, P = 0.73, N = 859) |
rs12937634(T)/17:47444442* | ZNF652 | (0.54, -0.0082, P = 2.3e-06, N = 7824) | (0.58, -0.0042, P = 0.93, N = 859) |
rs180050(T)/17:67977529 | AC004562.1 | (0.58, 0.008, P = 7.6e-06, N = 7824) | (0.097, -0.028, P = 0.74, N = 859) |
rs16974854(T)/17:68029032* | AC002539.1 | (0.038, -0.023, P = 1.2e-06, N = 7824) | (0.019, 0.019, P = 0.92, N = 859) |
rs7240271(A)/18:56909115* | intergenic | (0.51, 0.0074, P = 1.4e-05, N = 7824) | (0.24, -0.076, P = 0.18, N = 859) |
rs4891267(A)/18:73076464* | intergenic | (0.78, -0.18, P = 2e-06, N = 1955) | (0.59, -0.0073, P = 0.88, N = 859) |
rs8090890(C)/18:75305345 | intergenic | (0.64, -0.0075, P = 1.5e-05, N = 7824) | (0.57, 0.052, P = 0.3, N = 859) |
rs2270623(T)/19:18245512* | MAST3 | (0.54, -0.0076, P = 1.2e-05, N = 7824) | (0.33, 0.012, P = 0.81, N = 859) |
rs1496635(A)/19:31692461* | CTC-439O9.3 | (0.34, -0.0091, P = 2.1e-07, N = 7824) | (0.24, 0.014, P = 0.81, N = 859) |
rs113916293(GGT)/19:45966650 | FOSB | (0.28, -0.22, P = 9.4e-06, N = 1955) | (0.68, -0.11, P = 0.042, N = 859) |
rs260621(T)/2:109628974* | intergenic | (0.53, 0.026, P = 1.5e-05, N = 7824) | (0.91, 0.13, P = 0.11, N = 859) |
rs13415349(C)/2:223924792 | KCNE4 | (0.088, 0.22, P = 4e-06, N = 1955) | (0.25, -0.12, P = 0.028, N = 859) |
rs2161901(A)/2:36465942 | intergenic | (0.45, 0.16, P = 8.6e-06, N = 1955) | (0.81, 0.027, P = 0.66, N = 859) |
rs759507(T)/2:50754813* | NRXN1 | (0.37, 0.008, P = 5.2e-06, N = 7824) | (0.088, -0.055, P = 0.53, N = 859) |
rs1239074(T)/2:78842192* | intergenic | (0.74, 0.011, P = 1.2e-05, N = 7824) | (0.58, -0.0094, P = 0.85, N = 859) |
rs145129891(A)/20:4798828 | RASSF2 | (0.058, 0.34, P = 1.8e-06, N = 1955) | (0.011, -0.14, P = 0.54, N = 859) |
rs756577(T)/21:44118323* | PDE9A | (0.38, 0.0078, P = 1e-05, N = 7824) | (0.06, -0.07, P = 0.48, N = 859) |
rs6518219(T)/21:46654717* | LINC00334 | (0.051, 0.32, P = 1.5e-06, N = 1955) | (0.32, 0.091, P = 0.072, N = 859) |
rs5756751(C)/22:22423139 | IGLVIV-65 | (0.36, -0.18, P = 7.9e-06, N = 1955) | (0.71, 0.084, P = 0.11, N = 859) |
rs3859880(C)/22:26232110* | MYO18B | (0.34, -0.17, P = 3.5e-06, N = 1955) | (0.51, 0.024, P = 0.63, N = 859) |
rs4820242(A)/22:36982675* | CACNG2 | (0.62, -0.0085, P = 9e-07, N = 7824) | (0.76, -0.041, P = 0.47, N = 859) |
rs3788706(A)/22:46869170* | CELSR1 | (0.13, -0.012, P = 6.1e-06, N = 7824) | (0.16, 0.081, P = 0.21, N = 859) |
rs6770323(T)/3:161850410* | intergenic | (0.43, -0.008, P = 3.3e-06, N = 7824) | (0.14, 0.13, P = 0.069, N = 859) |
rs7619568(A)/3:191433799* | intergenic | (0.94, 0.018, P = 9.5e-06, N = 7824) | (0.79, 0.021, P = 0.71, N = 859) |
rs12490394(T)/3:5496096* | intergenic | (0.5, 0.0084, P = 8e-06, N = 7824) | (0.42, 0.031, P = 0.53, N = 859) |
rs9857268(A)/3:83398721* | intergenic | (0.41, 0.008, P = 3.1e-06, N = 7824) | (0.18, -0.045, P = 0.47, N = 859) |
rs7619096(A)/3:84199075* | intergenic | (0.69, 0.008, P = 4.9e-06, N = 7824) | (0.59, 0.051, P = 0.29, N = 859) |
rs2320536(T)/4:140801676* | MAML3 | (0.41, 0.0081, P = 3.3e-06, N = 7824) | (0.31, 0.024, P = 0.63, N = 859) |
rs1426134(C)/4:14179729 | RP11-669M16.1 | (0.37, -0.0081, P = 3.8e-06, N = 7824) | (0.18, -0.058, P = 0.35, N = 859) |
rs10857319(T)/4:159729794* | FNIP2 | (0.35, -0.0086, P = 9.5e-07, N = 7824) | (0.061, -0.071, P = 0.49, N = 859) |
rs10937762(A)/4:6918679* | TBC1D14 | (0.57, 0.0078, P = 8.2e-06, N = 7824) | (0.68, 0.072, P = 0.16, N = 859) |
rs13110221(T)/4:9517737 | OR7E83P | (0.82, 0.18, P = 8.1e-06, N = 1955) | (0.48, -0.0038, P = 0.94, N = 859) |
rs6815057(A)/4:97782257 | intergenic | (0.58, 0.0085, P = 1.1e-06, N = 7824) | (0.88, 0.015, P = 0.84, N = 859) |
rs10072101(A)/5:105182600 | intergenic | (0.38, -0.0077, P = 1.4e-05, N = 7824) | (0.49, 0.045, P = 0.35, N = 859) |
rs3131010(T)/6:31105147 | PSORS1C1 | (0.15, 0.24, P = 1.5e-06, N = 1955) | (0.056, -0.11, P = 0.31, N = 859) |
rs112790520(C)/6:33024031 | intergenic | (0.049, 0.43, P = 3.2e-06, N = 1955) | (0.17, 0.093, P = 0.15, N = 859) |
rs75219340(C)/7:113576177 | PPP1R3A | (0.015, -0.74, P = 2.3e-06, N = 1955) | (0.16, -0.0023, P = 0.97, N = 859) |
rs13224451(T)/7:128155486* | intergenic | (0.16, -0.18, P = 9.7e-06, N = 1955) | (0.22, 0.086, P = 0.14, N = 859) |
rs6946693(T)/7:70153068* | AUTS2 | (0.71, 0.01, P = 9.2e-06, N = 7824) | (0.91, -0.14, P = 0.087, N = 859) |
rs6978674(T)/7:77859611* | MAGI2 | (0.59, 0.0076, P = 1.3e-05, N = 7824) | (0.88, 0.05, P = 0.49, N = 859) |
rs11563854(C)/7:90142005* | CTB-13L3.1 | (0.067, 0.28, P = 5.1e-06, N = 1955) | (0.15, -0.076, P = 0.26, N = 859) |
rs10263361(G)/7:93678234 | AC003092.1 | (0.59, -0.12, P = 9.2e-06, N = 1955) | (0.93, -0.17, P = 0.074, N = 859) |
rs35534138(A)/8:38894334 | ADAM9 | (0.29, -0.16, P = 9.3e-07, N = 1955) | (0.13, 0.12, P = 0.096, N = 859) |
rs10085935(T)/8:39806267* | IDO2 | (0.38, -0.01, P = 3.3e-09, N = 7824) | (0.35, -0.0088, P = 0.86, N = 859) |
rs7843776(T)/8:75008787* | RP11-6I2.3 | (0.4, -0.0084, P = 7.4e-06, N = 7824) | (0.31, -0.09, P = 0.084, N = 859) |
rs542062(G)/9:134191501 | intergenic | (0.83, 0.18, P = 5.2e-06, N = 1955) | (0.53, 0.016, P = 0.75, N = 859) |
rs7851112(T)/9:7029050 | KDM4C | (0.62, -0.0077, P = 1.2e-05, N = 7824) | (0.8, -0.028, P = 0.65, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 82 | 0.079 (-0.0076- 0.17) P=0.074 | 8.1 | 32 | 11.1 (0- 82.9) | NA | NA | 0.006 P=0.48 |
MR-Egger | 82 | 0.059 (-0.046- 0.16) P=0.28 | 8.1 | 32 | 11.1 (0- 82.9) | 93 | 0.16 | 0.006 P=0.48 |
Weighted median | 82 | 0.072 (-0.053- 0.2) P=0.26 | 8.1 | 32 | 11.1 (0- 82.9) | NA | NA | 0.006 P=0.48 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.08 | 0.04 | 1.79 | 0.08 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 28 | 0.072 (-0.027- 0.17) P=0.16 | 15 | 22 | 21.9 (0- 69.7) | NA | NA | -0.0066 P=0.7 |
MR-Egger | 28 | 0.091 (-0.047- 0.23) P=0.21 | 15 | 22 | 21.9 (0- 69.7) | 31 | 0.24 | -0.0066 P=0.7 |
Weighted median | 28 | 0.054 (-0.09- 0.2) P=0.46 | 15 | 22 | 21.9 (0- 69.7) | NA | NA | -0.0066 P=0.7 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.07 | 0.05 | 1.42 | 0.17 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-Lactic acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs4631734(T)/1:171220236* | RP1-45C12.1 | (0.069, 0.017, P = 2.1e-05, N = 7365) | (0.12, -0.052, P = 0.47, N = 859) |
rs1193345(A)/1:17913714* | ARHGEF10L | (0.94, -0.022, P = 1.4e-06, N = 7365) | (0.79, 0.029, P = 0.62, N = 859) |
rs1775466(A)/1:197754967* | intergenic | (0.2, -0.011, P = 1.8e-05, N = 7365) | (0.083, -0.082, P = 0.35, N = 859) |
rs2906458(A)/1:44336389* | ST3GAL3 | (0.75, 0.0096, P = 4.5e-05, N = 7365) | (0.2, 0.035, P = 0.56, N = 859) |
rs10788232(T)/10:123803584* | TACC2 | (0.68, -0.011, P = 2.5e-06, N = 7365) | (0.31, -0.076, P = 0.15, N = 859) |
rs11253881(A)/10:16321532* | RP11-461K13.1 | (0.067, -0.018, P = 2.1e-05, N = 7365) | (0.064, 0.095, P = 0.34, N = 859) |
rs16937124(A)/10:36885746* | intergenic | (0.95, -0.021, P = 5.6e-06, N = 7365) | (0.94, -0.014, P = 0.89, N = 859) |
rs1930151(A)/10:56331387* | PCDH15 | (0.025, -0.029, P = 3.3e-05, N = 7365) | (0.15, 0.012, P = 0.86, N = 859) |
rs5785130(AT)/10:57194371 | RP11-168O22.1 | (0.4, 0.08, P = 6.9e-06, N = 1957) | (0.91, 0.12, P = 0.14, N = 859) |
rs7090753(A)/10:67201788* | intergenic | (0.99, 0.068, P = 3.3e-05, N = 1761) | (0.79, -0.2, P = 0.00074, N = 859) |
rs10887850(C)/10:90490627* | LIPK | (0.33, 0.19, P = 3e-06, N = 1957) | (0.44, 0.00078, P = 0.99, N = 859) |
rs10734178(A)/11:11244511 | intergenic | (0.82, 0.17, P = 2.9e-06, N = 1957) | (0.74, -0.00071, P = 0.99, N = 859) |
rs948094(C)/11:121092679 | intergenic | (0.51, -0.19, P = 8.6e-06, N = 1957) | (0.25, -0.17, P = 0.0026, N = 859) |
rs939522(C)/11:126691069 | KIRREL3 | (0.78, 0.21, P = 6.5e-07, N = 1957) | (0.95, -0.064, P = 0.57, N = 859) |
rs1499511(C)/11:36087853 | LDLRAD3 | (0.58, 0.18, P = 9.8e-06, N = 1957) | (0.86, -0.053, P = 0.44, N = 859) |
rs79469454(T)/11:4173635 | intergenic | (0.24, 0.23, P = 8.7e-06, N = 1957) | (0.23, -0.06, P = 0.3, N = 859) |
rs72931768(C)/11:69829717 | RP11-626H12.1 | (0.11, -0.24, P = 4.8e-06, N = 1957) | (0.037, 0.11, P = 0.39, N = 859) |
rs4763349(G)/12:13623999 | intergenic | (0.91, 0.3, P = 3.9e-06, N = 1957) | (0.86, 0.15, P = 0.027, N = 859) |
rs2242578(C)/12:57853153* | GLI1 | (0.67, -0.011, P = 5.1e-06, N = 7365) | (0.49, -0.051, P = 0.29, N = 859) |
rs6581752(A)/12:67777751 | intergenic | (0.22, -0.01, P = 1.9e-05, N = 7365) | (0.8, 0.0048, P = 0.94, N = 859) |
rs1330523(A)/13:104925616* | intergenic | (0.23, -0.012, P = 1.6e-06, N = 7365) | (0.26, -0.014, P = 0.79, N = 859) |
rs278050(A)/13:30436968* | TIMM8BP1 | (0.8, 0.01, P = 4.2e-05, N = 7365) | (0.65, 0.064, P = 0.21, N = 859) |
rs1751857(T)/13:40969438* | intergenic | (0.93, 0.016, P = 2.6e-05, N = 7365) | (0.87, 0.083, P = 0.25, N = 859) |
rs7995949(T)/13:63339902 | intergenic | (0.98, 0.031, P = 2.8e-05, N = 7365) | (0.89, 0.023, P = 0.77, N = 859) |
rs6571843(C)/14:21940701* | RAB2B | (0.063, 0.018, P = 1.4e-05, N = 7365) | (0.016, -0.45, P = 0.019, N = 859) |
rs12897027(T)/14:73190091 | DPF3 | (0.33, -0.14, P = 4.6e-06, N = 1957) | (0.15, -0.027, P = 0.68, N = 859) |
rs7155689(G)/14:98585327 | RP11-61O1.1 | (0.39, -0.16, P = 1.1e-06, N = 1957) | (0.25, 0.015, P = 0.78, N = 859) |
rs17392679(T)/15:49310954* | SECISBP2L | (0.075, 0.016, P = 4.4e-05, N = 7365) | (0.014, 0.19, P = 0.35, N = 859) |
rs10851537(C)/15:53555661* | intergenic | (0.97, 0.49, P = 3.2e-06, N = 1957) | (0.96, 0.15, P = 0.25, N = 859) |
rs7172532(G)/15:54369796 | UNC13C | (0.57, 0.17, P = 7.7e-06, N = 1957) | (0.22, -0.094, P = 0.12, N = 859) |
rs10851750(A)/15:66121590* | RAB11A | (0.13, -0.013, P = 2.9e-05, N = 7365) | (0.3, 0.031, P = 0.58, N = 859) |
rs2911125(T)/16:65557406 | LINC00922 | (0.15, 0.013, P = 3.7e-05, N = 7365) | (0.047, -0.16, P = 0.18, N = 859) |
rs3096276(T)/16:65577365* | LINC00922 | (0.16, 0.012, P = 4.5e-05, N = 7365) | (0.063, -0.093, P = 0.35, N = 859) |
rs17687360(C)/16:7708034* | RBFOX1 | (0.12, -0.28, P = 6.8e-06, N = 1957) | (0.022, -0.005, P = 0.98, N = 859) |
rs3785024(A)/16:84136233 | MBTPS1 | (0.95, -0.022, P = 5.6e-06, N = 7365) | (0.98, 0.023, P = 0.88, N = 859) |
rs234608(T)/17:15583555 | TRIM16 | (0.15, -0.021, P = 3.2e-05, N = 1761) | (0.28, -0.077, P = 0.15, N = 859) |
rs112207538(G)/18:18684507 | ROCK1 | (0.047, -0.39, P = 4.2e-06, N = 1957) | (0.12, -0.09, P = 0.21, N = 859) |
rs2000812(T)/18:47093790* | LIPG | (0.82, 0.011, P = 9.7e-06, N = 7365) | (0.96, -0.13, P = 0.31, N = 859) |
rs2305996(A)/18:693828 | ENOSF1 | (0.63, 0.015, P = 3.1e-05, N = 1761) | (0.7, -0.047, P = 0.36, N = 859) |
rs10424746(A)/19:11839659* | ZNF823 | (0.98, -0.052, P = 1e-05, N = 1761) | (0.75, 0.073, P = 0.18, N = 859) |
rs35054599(A)/2:123156656 | intergenic | (0.47, -0.19, P = 6e-06, N = 1957) | (0.39, 0.019, P = 0.69, N = 859) |
rs4316948(T)/2:162834595* | SLC4A10 | (0.8, 0.01, P = 4.3e-05, N = 7365) | (0.86, 0.053, P = 0.45, N = 859) |
rs780093(T)/2:27742603* | GCKR | (0.4, 0.012, P = 1.9e-07, N = 7365) | (0.14, -0.071, P = 0.3, N = 859) |
rs4635489(A)/2:30126856 | ALK | (0.018, 0.036, P = 5.7e-06, N = 7365) | (0.14, -0.15, P = 0.036, N = 859) |
rs4425121(C)/2:41341481 | intergenic | (0.47, -0.13, P = 4.5e-06, N = 1957) | (0.28, 0.0067, P = 0.9, N = 859) |
rs10202912(G)/2:66786405 | MEIS1 | (0.54, 0.13, P = 9.5e-06, N = 1957) | (0.55, 0.061, P = 0.22, N = 859) |
rs13403441(A)/2:83225802* | intergenic | (0.86, -0.024, P = 1e-06, N = 1761) | (0.65, -0.039, P = 0.44, N = 859) |
rs6736348(A)/2:85506104* | TCF7L1 | (0.79, 0.0099, P = 4.2e-05, N = 7365) | (0.49, -0.024, P = 0.61, N = 859) |
rs6105651(A)/20:16740242 | OTOR | (0.74, 0.0097, P = 4.8e-05, N = 7365) | (0.85, -0.037, P = 0.58, N = 859) |
rs13038639(A)/20:24893918* | intergenic | (0.22, 0.01, P = 1.9e-05, N = 7365) | (0.04, 0.054, P = 0.66, N = 859) |
rs6139395(A)/20:4309611* | intergenic | (0.2, -0.011, P = 1.7e-05, N = 7365) | (0.069, 0.11, P = 0.23, N = 859) |
rs2826779(T)/21:22669952* | NCAM2 | (0.27, 0.016, P = 4.3e-05, N = 1761) | (0.46, -0.093, P = 0.048, N = 859) |
rs9607371(T)/22:37083494* | CACNG2 | (0.79, -0.01, P = 3.9e-05, N = 7365) | (0.95, -0.0057, P = 0.96, N = 859) |
rs4688540(A)/3:61408148* | intergenic | (0.041, -0.025, P = 3.1e-05, N = 5604) | (0.45, -0.053, P = 0.27, N = 859) |
rs3112842(C)/4:112386094 | intergenic | (0.88, -0.3, P = 9.5e-07, N = 1957) | (0.94, 0.021, P = 0.83, N = 859) |
rs12648879(T)/4:177900078* | intergenic | (0.7, -0.0098, P = 3.3e-05, N = 7365) | (0.95, 0.036, P = 0.74, N = 859) |
rs13101859(T)/4:189247182* | intergenic | (0.22, -0.01, P = 3.6e-05, N = 7365) | (0.35, 0.048, P = 0.35, N = 859) |
rs61261762(A)/4:23845240* | PPARGC1A | (0.014, 0.69, P = 5.8e-06, N = 1957) | (0.065, -0.18, P = 0.064, N = 859) |
rs7682064(T)/4:25087708* | intergenic | (0.71, 0.01, P = 2.2e-05, N = 7365) | (0.65, 0.033, P = 0.5, N = 859) |
rs6820352(C)/4:83644113 | SCD5 | (0.32, -0.16, P = 4.9e-07, N = 1957) | (0.68, 0.0028, P = 0.96, N = 859) |
rs327838(T)/5:125159259* | intergenic | (0.53, 0.0096, P = 3.3e-05, N = 7365) | (0.48, 0.019, P = 0.69, N = 859) |
rs58808503(A)/5:31913006 | PDZD2 | (0.14, -0.29, P = 8.7e-08, N = 1957) | (0.02, 0.024, P = 0.89, N = 859) |
rs10941232(A)/5:35054639* | PRLR | (0.71, -0.14, P = 9.7e-06, N = 1957) | (0.57, 0.0024, P = 0.96, N = 859) |
rs10051776(T)/5:39207781* | FYB | (0.046, -0.39, P = 7.5e-06, N = 1957) | (0.088, 0.019, P = 0.83, N = 859) |
rs2042342(T)/5:55969146 | intergenic | (0.97, 0.033, P = 2.3e-05, N = 1761) | (0.88, -0.069, P = 0.35, N = 859) |
rs10475426(T)/5:8362200* | RP11-480D4.1 | (0.99, -0.078, P = 2.9e-05, N = 1761) | (0.82, -0.02, P = 0.75, N = 859) |
rs827867(A)/6:158714489* | RP11-732M18.3 | (0.9, 0.014, P = 2.5e-05, N = 7365) | (0.75, 0.016, P = 0.78, N = 859) |
rs4706063(G)/6:79449874 | intergenic | (0.4, -0.16, P = 3.3e-06, N = 1957) | (0.25, -0.041, P = 0.44, N = 859) |
rs6976221(T)/7:127833995* | intergenic | (0.76, 0.01, P = 2.5e-05, N = 7365) | (0.69, -0.025, P = 0.64, N = 859) |
rs759167(T)/7:55127784 | EGFR | (0.2, -0.011, P = 1.5e-05, N = 7365) | (0.27, 0.012, P = 0.83, N = 859) |
rs723526(A)/7:55134819* | EGFR | (0.2, -0.011, P = 6.6e-06, N = 7365) | (0.045, 0.029, P = 0.8, N = 859) |
rs4718532(T)/7:66805000 | RP11-166O4.5 | (0.51, -0.016, P = 6.6e-06, N = 1761) | (0.33, 0.065, P = 0.2, N = 859) |
rs4841405(A)/8:10506235 | RP1L1 | (0.28, -0.011, P = 1.3e-05, N = 7365) | (0.69, 0.0072, P = 0.89, N = 859) |
rs13282889(G)/8:105847029* | RP11-127H5.1 | (0.34, 0.17, P = 8.6e-06, N = 1957) | (0.2, -0.029, P = 0.64, N = 859) |
rs1385495(T)/8:120077018* | COLEC10 | (0.81, 0.0099, P = 4.4e-05, N = 7365) | (0.78, 0.028, P = 0.62, N = 859) |
rs1551903(A)/8:54462119* | intergenic | (0.74, 0.01, P = 2.8e-05, N = 7365) | (0.94, -0.021, P = 0.84, N = 859) |
rs10435634(A)/8:54863001* | RGS20 | (0.56, -0.0095, P = 4.3e-05, N = 7365) | (0.61, -0.073, P = 0.14, N = 859) |
rs9298249(A)/8:76037728* | intergenic | (0.014, 0.04, P = 2.2e-05, N = 7365) | (0.046, -0.15, P = 0.19, N = 859) |
rs146976936(G)/9:77959488 | intergenic | (0.011, -0.73, P = 3.4e-06, N = 1957) | (0.16, -0.13, P = 0.055, N = 859) |
rs1876100(A)/9:81189702 | intergenic | (0.26, -0.011, P = 9.2e-06, N = 7365) | (0.077, 0.019, P = 0.83, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 80 | 0.05 (-0.052- 0.15) P=0.34 | 9.1 | 36 | 13 (0- 72) | NA | NA | -0.0085 P=0.37 |
MR-Egger | 80 | 0.083 (-0.042- 0.21) P=0.2 | 9.1 | 36 | 13 (0- 72) | 91 | 0.15 | -0.0085 P=0.37 |
Weighted median | 80 | 0.0072 (-0.15- 0.16) P=0.93 | 9.1 | 36 | 13 (0- 72) | NA | NA | -0.0085 P=0.37 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.05 | 0.05 | 0.96 | 0.34 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 33 | 0.12 (0.00058- 0.24) P=0.049 | 16 | 27 | 17.5 (0- 71.2) | NA | NA | -0.027 P=0.11 |
MR-Egger | 33 | 0.22 (0.053- 0.38) P=0.014 | 16 | 27 | 17.5 (0- 71.2) | 34 | 0.33 | -0.027 P=0.11 |
Weighted median | 33 | 0.13 (-0.057- 0.31) P=0.18 | 16 | 27 | 17.5 (0- 71.2) | NA | NA | -0.027 P=0.11 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.12 | 0.06 | 1.97 | 0.06 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Oxalic acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs1938451(G)/1:68364218* | GNG12-AS1 | (0.69, -0.19, P = 1e-06, N = 1957) | (0.81, -0.052, P = 0.4, N = 859) |
rs12279359(A)/11:130730544 | RP11-890B15.2 | (0.4, -0.16, P = 2.1e-06, N = 1957) | (0.35, -0.063, P = 0.22, N = 859) |
rs12419619(T)/11:5952146 | TRIM5 | (0.46, 0.17, P = 1.3e-06, N = 1957) | (0.18, 0.065, P = 0.3, N = 859) |
rs113046166(T)/11:62222568* | AHNAK | (0.14, -0.21, P = 7e-06, N = 1957) | (0.07, 0.023, P = 0.81, N = 859) |
rs7119319(T)/11:90384749* | DISC1FP1 | (0.18, 0.22, P = 2.2e-06, N = 1957) | (0.49, 0.012, P = 0.8, N = 859) |
rs527373600(CAAAAA)/13:111174762 | RAB20 | (0.024, -0.22, P = 8.8e-06, N = 1957) | (0.34, -0.0022, P = 0.97, N = 859) |
rs796188220(CT)/13:72333063 | DACH1 | (0.028, -0.37, P = 2.6e-06, N = 1957) | (0.84, -0.083, P = 0.21, N = 859) |
rs753041(T)/13:99000485* | FARP1 | (0.33, -0.17, P = 8.1e-06, N = 1957) | (0.11, 0.012, P = 0.87, N = 859) |
rs35432338(C)/15:60595448 | intergenic | (0.4, 0.12, P = 8.3e-06, N = 1957) | (0.4, -0.015, P = 0.76, N = 859) |
rs72803825(T)/16:77506227 | intergenic | (0.13, -0.28, P = 4.4e-06, N = 1957) | (0.026, 0.032, P = 0.83, N = 859) |
rs2289470(A)/2:135214259* | TMEM163 | (0.16, -0.18, P = 5.8e-06, N = 1957) | (0.28, 0.032, P = 0.56, N = 859) |
rs4814550(T)/20:16733848 | OTOR | (0.17, -0.16, P = 3.5e-06, N = 1957) | (0.039, 0.026, P = 0.84, N = 859) |
rs34230332(G)/3:14725878 | C3orf20 | (0.076, 0.24, P = 3.7e-06, N = 1957) | (0.02, -0.44, P = 0.011, N = 859) |
rs6444594(T)/3:191661608 | intergenic | (0.43, -0.18, P = 4.1e-07, N = 1957) | (0.51, -0.016, P = 0.73, N = 859) |
rs11132006(C)/4:181512510 | intergenic | (0.31, -0.18, P = 1.7e-06, N = 1957) | (0.28, 0.026, P = 0.64, N = 859) |
rs73793418(C)/6:169685826 | XXyac-YX65C7_A.3 | (0.06, -0.29, P = 1.9e-06, N = 1957) | (0.14, 0.052, P = 0.44, N = 859) |
rs9477739(T)/6:18422473* | RNF144B | (0.044, 0.36, P = 7.6e-07, N = 1957) | (0.14, 0.082, P = 0.24, N = 859) |
rs199549415(A)/6:24291915 | DCDC2 | (0.1, -0.29, P = 5.2e-06, N = 1957) | (0.02, -0.15, P = 0.39, N = 859) |
rs116315297(A)/6:24414380 | MRS2 | (0.011, 0.97, P = 5.4e-07, N = 1957) | (0.031, -0.053, P = 0.71, N = 859) |
rs77760991(G)/6:72039148 | RP3-331H24.5 | (0.075, -0.26, P = 1.2e-06, N = 1957) | (0.056, 0.0069, P = 0.95, N = 859) |
rs58349860(A)/7:143024197* | CLCN1 | (0.34, -0.18, P = 6.3e-06, N = 1957) | (0.45, -0.021, P = 0.67, N = 859) |
rs567931256(CT)/8:1177501 | CTD-2281E23.2 | (0.013, -0.69, P = 8.5e-06, N = 1957) | (0.098, 0.078, P = 0.32, N = 859) |
rs6992200(C)/8:1835183 | ARHGEF10 | (0.022, 0.45, P = 9.3e-06, N = 1957) | (0.08, 0.084, P = 0.35, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 23 | 0.023 (-0.067- 0.11) P=0.62 | 23 | 27 | 1.82e-05 (0- 48.6) | NA | NA | 0.019 P=0.51 |
MR-Egger | 23 | -0.039 (-0.25- 0.17) P=0.72 | 23 | 27 | 1.82e-05 (0- 48.6) | 17 | 0.74 | 0.019 P=0.51 |
Weighted median | 23 | -0.032 (-0.18- 0.11) P=0.66 | 23 | 27 | 1.82e-05 (0- 48.6) | NA | NA | 0.019 P=0.51 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.02 | 0.05 | 0.5 | 0.62 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 16 | -2e-04 (-0.11- 0.11) P=1 | 22 | 18 | 0.000204 (0- 80.2) | NA | NA | 0.024 P=0.48 |
MR-Egger | 16 | -0.068 (-0.28- 0.15) P=0.55 | 22 | 18 | 0.000204 (0- 80.2) | 14 | 0.46 | 0.024 P=0.48 |
Weighted median | 16 | -0.06 (-0.23- 0.11) P=0.49 | 22 | 18 | 0.000204 (0- 80.2) | NA | NA | 0.024 P=0.48 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0 | 0.06 | 0 | 1 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Pantothenic acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs10919047(A)/1:169033499 | LINC00970 | (0.14, 0.018, P = 6.8e-07, N = 7160) | (0.039, -0.17, P = 0.17, N = 859) |
rs3949865(C)/1:183930806* | COLGALT2 | (0.62, -0.011, P = 9.5e-06, N = 7160) | (0.34, 0.019, P = 0.7, N = 859) |
rs553719(C)/1:37332937* | GRIK3 | (0.93, 0.34, P = 2.7e-06, N = 1953) | (0.83, 0.017, P = 0.8, N = 859) |
rs1998432(A)/10:10743956 | intergenic | (0.52, -0.011, P = 3.7e-05, N = 7160) | (0.35, -0.059, P = 0.24, N = 859) |
rs12242254(A)/10:19369100 | intergenic | (0.69, 0.011, P = 1.6e-05, N = 7160) | (0.92, -0.17, P = 0.068, N = 859) |
rs2457214(T)/10:50015097 | WDFY4 | (0.63, -0.011, P = 1.3e-05, N = 7160) | (0.35, 0.065, P = 0.19, N = 859) |
rs79209616(T)/10:67616849 | intergenic | (0.059, 0.41, P = 3.1e-06, N = 1953) | (0.41, -0.092, P = 0.061, N = 859) |
rs4746017(A)/10:71774872* | intergenic | (0.71, -0.012, P = 5.1e-06, N = 7160) | (0.77, -0.056, P = 0.31, N = 859) |
rs554027365(CT)/10:86169332 | CCSER2 | (0.11, 0.28, P = 1.4e-08, N = 1953) | (0.16, 0.03, P = 0.64, N = 859) |
rs2636805(T)/10:98927016 | SLIT1 | (0.53, -0.011, P = 3.2e-05, N = 7160) | (0.27, -0.081, P = 0.14, N = 859) |
rs3781966(A)/11:61956428 | SCGB1D1 | (0.31, -0.024, P = 2.4e-05, N = 1650) | (0.65, -0.036, P = 0.47, N = 859) |
rs78668216(T)/11:75873779 | intergenic | (0.055, -0.39, P = 9.1e-06, N = 1953) | (0.019, 0.2, P = 0.25, N = 859) |
rs7296705(T)/12:3374675 | TSPAN9 | (0.83, 0.014, P = 4.2e-05, N = 7160) | (0.61, 0.0082, P = 0.87, N = 859) |
rs11175024(A)/12:40463950 | SLC2A13 | (0.59, 0.011, P = 1.9e-05, N = 7160) | (0.65, -0.037, P = 0.48, N = 859) |
rs9788090(C)/12:67889960* | intergenic | (0.73, 0.015, P = 1.2e-05, N = 7160) | (0.22, 0.075, P = 0.19, N = 859) |
rs73133802(A)/12:68038605 | DYRK2 | (0.054, -0.28, P = 3.6e-06, N = 1953) | (0.07, -0.04, P = 0.68, N = 859) |
rs1163004(T)/12:81079471 | intergenic | (0.85, -0.014, P = 3.4e-05, N = 7160) | (0.25, 0.0081, P = 0.88, N = 859) |
rs199931900(A)/13:107397379 | intergenic | (0.28, -0.23, P = 2.6e-06, N = 1953) | (0.065, -0.0089, P = 0.93, N = 859) |
rs9514571(T)/13:107405459 | intergenic | (0.28, -0.23, P = 6.4e-06, N = 1953) | (0.049, -0.051, P = 0.65, N = 859) |
rs2183242(C)/13:21271776* | IL17D | (0.041, 0.029, P = 2.3e-05, N = 7160) | (0.11, 0.024, P = 0.76, N = 859) |
rs17082600(T)/13:26228314* | ATP8A2 | (0.019, 0.048, P = 4.1e-07, N = 7160) | (0.068, 0.047, P = 0.63, N = 859) |
rs9524526(T)/13:95150472 | intergenic | (0.34, 0.011, P = 2.9e-05, N = 7160) | (0.3, 0.0025, P = 0.96, N = 859) |
rs7997736(T)/13:98438292 | intergenic | (0.76, 0.024, P = 3.9e-05, N = 1650) | (0.42, -0.049, P = 0.31, N = 859) |
rs2346674(A)/14:57795057 | intergenic | (0.16, 0.015, P = 2.4e-05, N = 7160) | (0.027, -0.069, P = 0.65, N = 859) |
rs17751805(A)/14:65034363* | PPP1R36 | (0.96, 0.063, P = 3.4e-06, N = 1650) | (0.93, -0.21, P = 0.026, N = 859) |
rs2268984(C)/14:69408567 | ACTN1 | (0.91, 0.02, P = 2.4e-05, N = 7160) | (0.94, 0.088, P = 0.39, N = 859) |
rs4904868(T)/14:92781001 | intergenic | (0.44, -0.011, P = 1.4e-05, N = 7160) | (0.8, 0.037, P = 0.54, N = 859) |
rs7166370(C)/15:60959089* | RORA | (0.43, 0.012, P = 5.2e-06, N = 7160) | (0.25, 0.014, P = 0.8, N = 859) |
rs8039191(C)/15:66406574 | MEGF11 | (0.53, -0.15, P = 3.4e-06, N = 1953) | (0.64, 0.0024, P = 0.96, N = 859) |
rs1561886(A)/15:71497130* | THSD4 | (0.067, -0.041, P = 3.1e-05, N = 1650) | (0.14, 0.13, P = 0.065, N = 859) |
rs8023317(A)/15:86541098 | intergenic | (0.31, 0.011, P = 3.5e-05, N = 7160) | (0.54, 0.006, P = 0.9, N = 859) |
rs1975271(T)/16:9497663* | RP11-243A14.1 | (0.59, 0.012, P = 8.7e-06, N = 7160) | (0.89, -0.049, P = 0.51, N = 859) |
rs432432(C)/17:15225813* | TEKT3 | (0.61, -0.011, P = 3.2e-05, N = 7160) | (0.8, 0.013, P = 0.82, N = 859) |
rs2526477(A)/17:20131193* | SPECC1 | (0.61, -0.012, P = 3e-06, N = 7160) | (0.58, 0.082, P = 0.088, N = 859) |
rs2671822(T)/17:33597682 | SLFN5 | (0.65, -0.011, P = 2.6e-05, N = 7160) | (0.86, -0.027, P = 0.69, N = 859) |
rs8065435(A)/17:56157617* | DYNLL2 | (0.33, -0.013, P = 5e-06, N = 7160) | (0.066, 0.02, P = 0.84, N = 859) |
rs12951496(T)/17:6955671 | intergenic | (0.87, -0.018, P = 1.7e-05, N = 7160) | (0.82, -0.018, P = 0.78, N = 859) |
rs4789816(A)/17:80607830 | WDR45B | (0.33, 0.011, P = 3.5e-05, N = 7160) | (0.11, 0.072, P = 0.36, N = 859) |
rs74580079(G)/18:6776863 | ARHGAP28 | (0.048, 0.4, P = 8e-06, N = 1953) | (0.016, 0.072, P = 0.71, N = 859) |
rs3865404(T)/18:755862 | YES1 | (0.49, -0.021, P = 3.7e-05, N = 1650) | (0.69, -0.015, P = 0.78, N = 859) |
rs2967437(A)/19:37086645 | AC092295.7 | (0.69, -0.013, P = 1.9e-06, N = 7160) | (0.79, 0.017, P = 0.77, N = 859) |
rs7574257(T)/2:105988447* | FHL2 | (0.33, 0.012, P = 7.8e-06, N = 7160) | (0.2, 0.047, P = 0.45, N = 859) |
rs12617095(A)/2:134762590 | intergenic | (0.039, 0.054, P = 3.2e-05, N = 1650) | (0.12, 0.12, P = 0.11, N = 859) |
rs1607363(T)/2:156670123* | intergenic | (0.72, 0.011, P = 3.5e-05, N = 7160) | (0.7, -0.052, P = 0.33, N = 859) |
rs839524(T)/2:212815801 | ERBB4 | (0.12, 0.019, P = 8.5e-06, N = 7160) | (0.11, 0.13, P = 0.087, N = 859) |
rs10185729(T)/2:212842777* | ERBB4 | (0.86, -0.015, P = 2.1e-05, N = 7160) | (0.58, -0.026, P = 0.6, N = 859) |
rs1395(A)/2:27424636* | SLC5A6 | (0.7, 0.017, P = 8.1e-11, N = 7160) | (0.23, -0.14, P = 0.019, N = 859) |
rs17049936(T)/2:59346812* | intergenic | (0.89, -0.019, P = 9.6e-06, N = 7160) | (0.98, 0.37, P = 0.052, N = 859) |
rs12614153(A)/2:99502489 | KIAA1211L | (0.02, -0.041, P = 1.1e-05, N = 7160) | (0.023, 0.092, P = 0.57, N = 859) |
rs16996604(C)/20:15792861* | MACROD2 | (0.97, -0.053, P = 7.2e-06, N = 1650) | (0.92, 0.062, P = 0.49, N = 859) |
rs6034318(A)/20:15863999* | MACROD2 | (0.013, 0.11, P = 4.5e-06, N = 1650) | (0.11, -0.042, P = 0.58, N = 859) |
rs6078500(T)/20:182013* | intergenic | (0.51, -0.012, P = 4.5e-06, N = 7160) | (0.49, 0.12, P = 0.01, N = 859) |
rs7280622(A)/21:39417006* | DSCR4 | (0.7, -0.011, P = 4.3e-05, N = 7160) | (0.87, -0.0057, P = 0.94, N = 859) |
rs760130(C)/21:41356039 | intergenic | (0.69, -0.12, P = 4.9e-06, N = 1953) | (0.9, -0.14, P = 0.087, N = 859) |
rs762407(A)/21:45181446 | PDXK | (0.3, -0.011, P = 2e-05, N = 7160) | (0.38, -0.011, P = 0.83, N = 859) |
rs2330959(T)/22:25343430 | TMEM211 | (0.14, -0.24, P = 7.3e-06, N = 1953) | (0.024, 0.12, P = 0.44, N = 859) |
rs1350858(A)/3:109874627 | intergenic | (0.18, 0.015, P = 8.2e-06, N = 7160) | (0.36, -0.056, P = 0.26, N = 859) |
rs1282954(T)/3:111627743 | PHLDB2 | (0.98, -0.14, P = 7.1e-07, N = 1650) | (0.89, -0.013, P = 0.86, N = 859) |
rs2173615(T)/3:191673577* | RP11-655G22.2 | (0.32, 0.013, P = 1.7e-06, N = 7160) | (0.27, -0.048, P = 0.38, N = 859) |
rs11719633(A)/3:20402881 | intergenic | (0.095, -0.021, P = 3e-06, N = 7160) | (0.02, -0.22, P = 0.2, N = 859) |
rs13091209(A)/3:24958459* | AC133680.1 | (0.84, 0.014, P = 2.8e-05, N = 7160) | (0.93, -0.071, P = 0.46, N = 859) |
rs6774965(A)/3:27548813* | intergenic | (0.86, -0.016, P = 3.2e-06, N = 7160) | (0.76, 0.019, P = 0.74, N = 859) |
rs11374874(CT)/3:46776965 | PRSS50 | (0.045, 0.31, P = 6.2e-06, N = 1953) | (0.31, 0.032, P = 0.54, N = 859) |
rs9813765(T)/3:4896746 | AC018816.3 | (0.92, 0.02, P = 3.3e-05, N = 7160) | (0.76, -0.063, P = 0.27, N = 859) |
rs7634314(A)/3:61464280 | intergenic | (0.31, 0.011, P = 2e-05, N = 7160) | (0.21, -0.076, P = 0.21, N = 859) |
rs75342462(T)/3:61547164 | PTPRG | (0.27, 0.17, P = 3.3e-06, N = 1953) | (0.13, 0.0054, P = 0.94, N = 859) |
rs10510382(T)/3:7997953* | LMCD1-AS1 | (0.79, -0.015, P = 1.1e-05, N = 7160) | (0.89, -0.043, P = 0.57, N = 859) |
rs6848070(A)/4:127862814* | intergenic | (0.35, -0.012, P = 9.9e-06, N = 7160) | (0.1, 0.13, P = 0.12, N = 859) |
rs795365(A)/4:140485914 | SETD7 | (0.73, -0.014, P = 2.5e-05, N = 7160) | (0.44, 0.047, P = 0.34, N = 859) |
rs4692562(T)/4:169990660 | intergenic | (0.66, -0.027, P = 1.9e-05, N = 1650) | (0.62, -0.033, P = 0.5, N = 859) |
rs10012798(T)/4:169993004 | intergenic | (0.67, -0.024, P = 1.4e-05, N = 1650) | (0.7, -0.00084, P = 0.99, N = 859) |
rs10520541(C)/4:183680605* | TENM3 | (0.83, 0.014, P = 3.4e-05, N = 7160) | (0.9, -0.058, P = 0.48, N = 859) |
rs6837566(G)/4:186789501 | SORBS2 | (0.098, 0.26, P = 6.9e-06, N = 1953) | (0.094, 0.06, P = 0.46, N = 859) |
rs10024571(C)/4:188772103* | intergenic | (0.98, -0.082, P = 1.6e-05, N = 1650) | (0.97, 0.068, P = 0.61, N = 859) |
rs1895918(T)/4:37111619* | RP11-103J17.1 | (0.56, 0.12, P = 8.4e-06, N = 1953) | (0.26, 0.11, P = 0.049, N = 859) |
rs2457411(T)/4:48244026* | TEC | (0.3, 0.011, P = 1.9e-05, N = 7160) | (0.052, 0.14, P = 0.18, N = 859) |
rs12522179(A)/5:101403134* | intergenic | (0.82, -0.028, P = 3.8e-05, N = 1650) | (0.58, -0.057, P = 0.23, N = 859) |
rs4078252(T)/5:112455467* | MCC | (0.32, -0.011, P = 3.9e-05, N = 7160) | (0.13, 0.023, P = 0.75, N = 859) |
rs2605200(T)/5:114751410 | intergenic | (0.22, -0.016, P = 2.1e-05, N = 7160) | (0.31, -0.016, P = 0.75, N = 859) |
rs248063(A)/5:126500208* | intergenic | (0.5, -0.024, P = 2.4e-06, N = 1650) | (0.68, 0.089, P = 0.082, N = 859) |
rs271072(A)/5:144532826 | intergenic | (0.38, -0.012, P = 5.9e-06, N = 7160) | (0.25, 0.0073, P = 0.9, N = 859) |
rs726550(T)/5:144668820* | intergenic | (0.33, 0.011, P = 3.7e-05, N = 7160) | (0.58, -0.069, P = 0.15, N = 859) |
rs6873171(A)/5:145305766* | intergenic | (0.065, 0.041, P = 4.5e-05, N = 1650) | (0.24, -0.065, P = 0.25, N = 859) |
rs1994860(G)/5:152989323 | GRIA1 | (0.28, 0.19, P = 6.1e-06, N = 1953) | (0.1, 0.079, P = 0.31, N = 859) |
rs2255493(T)/5:153432970 | MFAP3 | (0.63, -0.011, P = 3.8e-05, N = 7160) | (0.65, 0.04, P = 0.44, N = 859) |
rs31705(C)/5:154683887* | intergenic | (0.33, 0.012, P = 1e-05, N = 7160) | (0.39, -0.046, P = 0.36, N = 859) |
rs10051445(G)/5:82356099 | TMEM167A | (0.45, 0.16, P = 5.2e-07, N = 1953) | (0.59, 0.0014, P = 0.98, N = 859) |
rs1674726(A)/6:153858614* | intergenic | (0.35, -0.011, P = 4e-05, N = 7160) | (0.29, -0.034, P = 0.53, N = 859) |
rs6557395(A)/6:155369261 | TIAM2 | (0.83, -0.015, P = 2.9e-05, N = 7160) | (0.88, 0.032, P = 0.67, N = 859) |
rs9365106(A)/6:160282834* | intergenic | (0.68, -0.012, P = 8.1e-06, N = 7160) | (0.54, -0.059, P = 0.24, N = 859) |
rs960295(T)/6:1726623 | GMDS | (0.25, -0.025, P = 1.3e-05, N = 1650) | (0.084, 0.0017, P = 0.98, N = 859) |
rs7774567(A)/6:25425526* | LRRC16A | (0.083, 0.02, P = 1.8e-05, N = 7160) | (0.11, -0.015, P = 0.84, N = 859) |
rs13212846(A)/6:50301100 | intergenic | (0.93, -0.024, P = 2.9e-06, N = 7160) | (0.99, 0.21, P = 0.3, N = 859) |
rs17141663(T)/6:6063348* | intergenic | (0.074, -0.021, P = 4.4e-05, N = 7160) | (0.072, 0.16, P = 0.091, N = 859) |
rs9649040(T)/7:131859395 | PLXNA4 | (0.12, -0.017, P = 4.3e-05, N = 7160) | (0.082, -0.00026, P = 1, N = 859) |
rs192735620(T)/7:152543295 | ACTR3B | (0.012, 0.63, P = 5.8e-06, N = 1953) | (0.02, -0.2, P = 0.25, N = 859) |
rs754554(T)/7:24758818 | DFNA5 | (0.15, 0.015, P = 2e-05, N = 7160) | (0.21, 0.012, P = 0.84, N = 859) |
rs7458704(T)/7:67422093 | intergenic | (0.98, -0.054, P = 5.6e-07, N = 7160) | (0.84, -0.095, P = 0.15, N = 859) |
rs17158882(T)/7:83963481* | SEMA3A | (0.91, -0.024, P = 3.9e-05, N = 7160) | (0.92, 0.11, P = 0.25, N = 859) |
rs1034495(A)/8:111157151 | intergenic | (0.7, 0.011, P = 4.2e-05, N = 7160) | (0.93, 0.022, P = 0.82, N = 859) |
rs283734(G)/8:128270368 | intergenic | (0.22, -0.15, P = 7.2e-06, N = 1953) | (0.5, -0.0055, P = 0.91, N = 859) |
rs4269521(A)/8:132358549* | intergenic | (0.84, 0.017, P = 1e-06, N = 7160) | (0.95, 0.18, P = 0.13, N = 859) |
rs12544560(A)/8:21368451 | intergenic | (0.15, 0.016, P = 3.3e-06, N = 7160) | (0.065, -0.015, P = 0.88, N = 859) |
rs2979166(A)/8:8228245 | SGK223 | (0.47, 0.011, P = 1.5e-05, N = 7160) | (0.74, 0.094, P = 0.092, N = 859) |
rs7009776(T)/8:90373191 | intergenic | (0.33, -0.027, P = 7.1e-06, N = 1650) | (0.23, 0.0098, P = 0.87, N = 859) |
rs17771752(T)/9:28195226* | LINGO2 | (0.049, 0.025, P = 2e-05, N = 7160) | (0.023, -0.0049, P = 0.98, N = 859) |
rs700978(A)/9:98496807* | intergenic | (0.31, -0.014, P = 1.9e-05, N = 7160) | (0.5, 0.069, P = 0.15, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 107 | -0.027 (-0.15- 0.096) P=0.67 | 4.9 | 25 | 1.06 (0- 81.2) | NA | NA | -0.01 P=0.16 |
MR-Egger | 107 | 0.024 (-0.12- 0.17) P=0.74 | 4.9 | 25 | 1.06 (0- 81.2) | 109 | 0.38 | -0.01 P=0.16 |
Weighted median | 107 | 0.04 (-0.14- 0.22) P=0.67 | 4.9 | 25 | 1.06 (0- 81.2) | NA | NA | -0.01 P=0.16 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.03 | 0.06 | -0.43 | 0.67 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 62 | -0.021 (-0.14- 0.093) P=0.72 | 7.4 | 23 | 2.08 (0- 20.7) | NA | NA | 0.005 P=0.6 |
MR-Egger | 62 | -0.044 (-0.2- 0.11) P=0.58 | 7.4 | 23 | 2.08 (0- 20.7) | 47 | 0.88 | 0.005 P=0.6 |
Weighted median | 62 | 0.035 (-0.16- 0.23) P=0.72 | 7.4 | 23 | 2.08 (0- 20.7) | NA | NA | 0.005 P=0.6 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.02 | 0.06 | -0.36 | 0.72 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-Phenylalanine (Shin et al/Long et al) | eGFR (CSSCD) |
rs10913071(A)/1:175712239 | TNR | (0.22, -0.0051, P = 2.8e-05, N = 7824) | (0.1, 0.2, P = 0.014, N = 859) |
rs149766(T)/1:57642394* | DAB1 | (0.071, -0.0099, P = 2.6e-05, N = 7824) | (0.012, -0.33, P = 0.14, N = 859) |
rs1865020(A)/10:78688976 | KCNMA1 | (0.33, 0.0049, P = 3.2e-05, N = 7824) | (0.52, -0.037, P = 0.45, N = 859) |
rs628223(A)/11:82968164* | CCDC90B | (0.69, 0.0048, P = 4.3e-05, N = 7824) | (0.86, 0.016, P = 0.82, N = 859) |
rs1498694(A)/12:103257876* | PAH | (0.4, 0.0075, P = 7.3e-11, N = 7824) | (0.32, 0.08, P = 0.12, N = 859) |
rs11066801(T)/12:114319498* | RBM19 | (0.2, -0.0092, P = 4.8e-05, N = 7824) | (0.18, -0.0018, P = 0.98, N = 859) |
rs1163900(A)/12:17612617* | intergenic | (0.26, -0.0054, P = 1e-05, N = 7824) | (0.44, -0.018, P = 0.72, N = 859) |
rs12370281(C)/12:98249633* | intergenic | (0.7, -0.0048, P = 4.9e-05, N = 7824) | (0.59, -0.088, P = 0.072, N = 859) |
rs17300024(A)/13:93913236* | GPC6 | (0.99, -0.037, P = 2.9e-05, N = 7824) | (0.95, -0.069, P = 0.54, N = 859) |
rs10145453(T)/14:63735954* | RHOJ | (0.81, -0.0051, P = 4.7e-05, N = 7824) | (0.47, 0.11, P = 0.021, N = 859) |
rs16975959(T)/15:96564721* | intergenic | (0.99, -0.035, P = 2e-05, N = 7824) | (0.93, -0.034, P = 0.71, N = 859) |
rs12598787(A)/16:77403469* | ADAMTS18 | (0.88, -0.0089, P = 1.6e-05, N = 7824) | (0.98, 0.14, P = 0.39, N = 859) |
rs10445272(A)/17:12621782* | MYOCD | (0.21, 0.0051, P = 3.7e-05, N = 7824) | (0.43, -0.0084, P = 0.86, N = 859) |
rs2905873(A)/17:29532356* | NF1 | (0.69, 0.0055, P = 3e-06, N = 7824) | (0.94, -0.0093, P = 0.93, N = 859) |
rs1468260(A)/17:39052931* | intergenic | (0.49, -0.0053, P = 3.5e-05, N = 7824) | (0.82, -0.012, P = 0.85, N = 859) |
rs6736106(C)/2:217328446* | SMARCAL1 | (0.2, 0.0053, P = 2.1e-05, N = 7824) | (0.5, 0.051, P = 0.31, N = 859) |
rs10050054(T)/4:178647306* | LINC01098 | (0.98, -0.033, P = 2.6e-06, N = 7824) | (0.67, 0.11, P = 0.029, N = 859) |
rs1872445(T)/4:186504058* | SORBS2 | (0.55, -0.0049, P = 1.9e-05, N = 7824) | (0.87, 0.068, P = 0.34, N = 859) |
rs4863027(T)/4:190729688* | AF146191.4 | (0.96, -0.019, P = 4.3e-05, N = 7824) | (0.82, 0.086, P = 0.17, N = 859) |
rs6831907(T)/4:190761715 | AF146191.4 | (0.04, 0.021, P = 7.1e-06, N = 7824) | (0.04, 0.13, P = 0.27, N = 859) |
rs17732494(T)/5:56301267 | intergenic | (0.46, 0.0076, P = 4.7e-05, N = 7824) | (0.63, 0.034, P = 0.51, N = 859) |
rs899855(A)/6:130094673* | intergenic | (0.93, -0.0097, P = 1.4e-05, N = 7824) | (0.93, -0.032, P = 0.73, N = 859) |
rs7764865(T)/6:42835487 | GLTSCR1L | (0.059, 0.012, P = 3.9e-05, N = 7824) | (0.51, -0.05, P = 0.31, N = 859) |
rs2613565(A)/6:95894399 | intergenic | (0.64, 0.0084, P = 4.5e-05, N = 7824) | (0.59, -0.091, P = 0.068, N = 859) |
rs2456946(C)/7:113200934* | intergenic | (0.023, 0.033, P = 4.7e-05, N = 7824) | (0.047, -0.077, P = 0.5, N = 859) |
rs12706142(A)/7:116775046* | ST7 | (0.77, -0.0052, P = 2.9e-05, N = 7824) | (0.97, 0.029, P = 0.83, N = 859) |
rs6965127(A)/7:42866718 | AC010132.10 | (0.34, -0.005, P = 2.4e-05, N = 7824) | (0.051, -0.064, P = 0.54, N = 859) |
rs1565225(A)/8:85687107* | RALYL | (0.24, 0.007, P = 2.3e-06, N = 7824) | (0.58, -0.055, P = 0.27, N = 859) |
rs12001237(C)/9:115854670 | intergenic | (0.91, 0.0082, P = 3.5e-05, N = 7824) | (0.98, 0.3, P = 0.081, N = 859) |
rs944982(T)/9:119847448* | ASTN2 | (0.11, 0.013, P = 1.1e-05, N = 7824) | (0.063, 0.1, P = 0.3, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 30 | -1.5 (-3.6- 0.62) P=0.16 | 0.15 | 0.057 | 9.11 (0- 77.2) | NA | NA | 0.0016 P=0.94 |
MR-Egger | 30 | -1.6 (-4.9- 1.7) P=0.35 | 0.15 | 0.057 | 9.11 (0- 77.2) | 40 | 0.072 | 0.0016 P=0.94 |
Weighted median | 30 | -2.6 (-5.3- 0.16) P=0.065 | 0.15 | 0.057 | 9.11 (0- 77.2) | NA | NA | 0.0016 P=0.94 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -1.5 | 1.08 | -1.39 | 0.18 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 8 | -2.4 (-9.7- 4.8) P=0.51 | 0.15 | 0.015 | 41.8 (0- 87.8) | NA | NA | -0.087 P=0.35 |
MR-Egger | 8 | 6.6 (-12- 26) P=0.52 | 0.15 | 0.015 | 41.8 (0- 87.8) | 13 | 0.044 | -0.087 P=0.35 |
Weighted median | 8 | -2.3 (-9.5- 4.9) P=0.53 | 0.15 | 0.015 | 41.8 (0- 87.8) | NA | NA | -0.087 P=0.35 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -2.44 | 3.72 | -0.66 | 0.53 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-Proline (Shin et al/Long et al) | eGFR (CSSCD) |
rs773585(T)/1:113841023* | intergenic | (0.65, 0.0076, P = 1.9e-05, N = 7824) | (0.91, 0.08, P = 0.34, N = 859) |
rs11802885(A)/1:113896872 | intergenic | (0.36, 0.0098, P = 2.3e-08, N = 7824) | (0.25, 0.029, P = 0.6, N = 859) |
rs17492329(T)/1:202461103 | PPP1R12B | (0.78, -0.011, P = 2.4e-05, N = 7824) | (0.97, 0.27, P = 0.044, N = 859) |
rs2993536(A)/1:212154930 | INTS7 | (0.97, 0.021, P = 3.5e-05, N = 7824) | (0.91, -0.12, P = 0.18, N = 859) |
rs587043(T)/1:226797522* | C1orf95 | (0.33, -0.0077, P = 1.3e-05, N = 7824) | (0.23, 0.023, P = 0.7, N = 859) |
rs10495434(T)/1:239473965* | intergenic | (0.079, -0.015, P = 3.2e-05, N = 7824) | (0.16, -0.0096, P = 0.88, N = 859) |
rs1888182(T)/1:54967890 | AC099796.1 | (0.42, 0.0079, P = 7.9e-06, N = 7824) | (0.14, 0.032, P = 0.65, N = 859) |
rs852767(G)/1:58287224 | DAB1 | (0.36, 0.18, P = 9.2e-06, N = 1957) | (0.12, 0.045, P = 0.55, N = 859) |
rs34821139(T)/1:61645881* | NFIA | (0.098, 0.23, P = 4.1e-06, N = 1957) | (0.02, 0.14, P = 0.43, N = 859) |
rs7546702(T)/1:93948403* | FNBP1L | (0.56, -0.15, P = 4.2e-06, N = 1957) | (0.12, -0.096, P = 0.19, N = 859) |
rs11192397(G)/10:107070578* | intergenic | (0.15, -0.27, P = 9.1e-06, N = 1957) | (0.026, 0.041, P = 0.79, N = 859) |
rs532728(C)/10:129652583* | intergenic | (0.61, 0.0074, P = 3e-05, N = 7824) | (0.71, -0.033, P = 0.54, N = 859) |
rs112873694(AT)/10:18655806 | CACNB2 | (0.056, 0.47, P = 3.6e-06, N = 1957) | (0.08, -0.044, P = 0.63, N = 859) |
rs12243290(A)/10:66938581* | intergenic | (0.9, -0.016, P = 4e-06, N = 7824) | (0.76, -0.012, P = 0.83, N = 859) |
rs10887554(A)/10:87824238 | GRID1 | (0.53, 0.0072, P = 3.9e-05, N = 7824) | (0.25, 0.11, P = 0.042, N = 859) |
rs10905627(G)/10:9905850 | intergenic | (0.74, 0.19, P = 2.8e-06, N = 1957) | (0.45, -0.062, P = 0.2, N = 859) |
rs4755121(A)/11:105804856 | GRIA4 | (0.084, 0.015, P = 2.3e-05, N = 7824) | (0.025, 0.019, P = 0.9, N = 859) |
rs1371674(T)/11:40531941 | LRRC4C | (0.59, -0.0076, P = 1.9e-05, N = 7824) | (0.52, 0.013, P = 0.8, N = 859) |
rs10501294(T)/11:43086410 | RP11-111A24.2 | (0.87, -0.012, P = 3.1e-06, N = 7824) | (0.97, -0.13, P = 0.35, N = 859) |
rs535633(A)/11:92825738* | intergenic | (0.58, -0.0086, P = 1e-06, N = 7824) | (0.65, 0.023, P = 0.66, N = 859) |
rs562808(T)/11:95961049* | MAML2 | (0.61, -0.0076, P = 1.8e-05, N = 7824) | (0.37, 0.0017, P = 0.97, N = 859) |
rs7296105(A)/12:117842549 | NOS1 | (0.88, 0.026, P = 2.3e-06, N = 7824) | (0.45, 0.046, P = 0.36, N = 859) |
rs11183620(A)/12:47212370* | SLC38A4 | (0.47, 0.0082, P = 2.3e-06, N = 7824) | (0.8, -0.00048, P = 0.99, N = 859) |
rs7958568(T)/12:47431496* | intergenic | (0.47, 0.0078, P = 8.9e-06, N = 7824) | (0.62, -0.027, P = 0.59, N = 859) |
rs4082475(A)/12:52907240 | KRT5 | (0.13, 0.011, P = 2e-05, N = 7824) | (0.2, -0.032, P = 0.6, N = 859) |
rs10783990(A)/12:59976616 | RNU4-20P | (0.64, 0.0072, P = 4.2e-05, N = 7824) | (0.75, 0.0032, P = 0.95, N = 859) |
rs10747856(A)/12:60262116 | intergenic | (0.52, -0.0079, P = 6e-06, N = 7824) | (0.44, 0.11, P = 0.022, N = 859) |
rs950755(T)/12:61227957* | intergenic | (0.86, -0.012, P = 8.5e-06, N = 7824) | (0.7, 0.036, P = 0.49, N = 859) |
rs2278823(A)/12:7288734* | CLSTN3 | (0.14, -0.011, P = 4.8e-05, N = 7824) | (0.2, 0.032, P = 0.59, N = 859) |
rs3132360(A)/13:26297093 | ATP8A2 | (0.21, -0.011, P = 2.1e-05, N = 7824) | (0.2, -0.071, P = 0.23, N = 859) |
rs17245120(A)/13:31319133 | ALOX5AP | (0.072, 0.027, P = 4.8e-05, N = 7824) | (0.044, 0.029, P = 0.81, N = 859) |
rs993158(T)/13:62992697 | intergenic | (0.86, 0.011, P = 1.5e-05, N = 7824) | (0.48, -0.012, P = 0.81, N = 859) |
rs2449697(T)/13:64025289 | intergenic | (0.66, 0.0072, P = 4.9e-05, N = 7824) | (0.5, 0.072, P = 0.14, N = 859) |
rs9540462(T)/13:66100680 | intergenic | (0.88, -0.012, P = 4.8e-06, N = 7824) | (0.89, -0.0067, P = 0.93, N = 859) |
rs9523512(T)/13:92775592* | GPC5 | (0.47, 0.0077, P = 1.3e-05, N = 7824) | (0.8, -0.042, P = 0.49, N = 859) |
rs10431644(T)/14:103694331 | intergenic | (0.028, 0.45, P = 1.9e-06, N = 1957) | (0.077, -0.1, P = 0.27, N = 859) |
rs62008719(C)/14:103698656 | intergenic | (0.028, 0.45, P = 1.5e-06, N = 1957) | (0.11, -0.16, P = 0.047, N = 859) |
rs2101244(A)/14:42848284 | CTD-2307P3.1 | (0.024, 0.66, P = 4.8e-06, N = 1957) | (0.14, 0.045, P = 0.51, N = 859) |
rs12889337(T)/14:46784593* | LINC00871 | (0.36, 0.0077, P = 1.5e-05, N = 7824) | (0.82, 0.0092, P = 0.89, N = 859) |
rs11848063(A)/14:47235445* | intergenic | (0.59, 0.0087, P = 7.1e-07, N = 7824) | (0.44, -0.028, P = 0.57, N = 859) |
rs12901694(A)/15:87326551 | AGBL1 | (0.4, 0.0076, P = 1.2e-05, N = 7824) | (0.84, -0.1, P = 0.12, N = 859) |
rs7162266(T)/15:94673885 | intergenic | (0.6, 0.0072, P = 3.9e-05, N = 7824) | (0.69, -0.0069, P = 0.89, N = 859) |
rs11638366(T)/15:98810226* | CTD-2544M6.1 | (0.43, -0.0076, P = 1.6e-05, N = 7824) | (0.4, 0.00042, P = 0.99, N = 859) |
rs869289(T)/16:12385806* | SNX29 | (0.38, -0.0077, P = 1.5e-05, N = 7824) | (0.27, -0.041, P = 0.45, N = 859) |
rs74016008(C)/16:27150916 | EEF1A1P38 | (0.11, 0.25, P = 2.1e-06, N = 1957) | (0.14, 0.027, P = 0.69, N = 859) |
rs893175(A)/16:49303818 | intergenic | (0.59, -0.0086, P = 1.5e-06, N = 7824) | (0.33, -0.099, P = 0.05, N = 859) |
rs11075967(T)/16:73154049 | intergenic | (0.67, -0.0087, P = 8.7e-07, N = 7824) | (0.3, -0.061, P = 0.22, N = 859) |
rs17144033(G)/16:7590752* | RBFOX1 | (0.089, -0.27, P = 2.7e-06, N = 1957) | (0.18, -0.08, P = 0.22, N = 859) |
rs1080941(A)/16:77890685 | VAT1L | (0.63, 0.0078, P = 1.1e-05, N = 7824) | (0.41, -0.0023, P = 0.96, N = 859) |
rs17750740(T)/16:80651109* | CDYL2 | (0.83, 0.01, P = 2.2e-05, N = 7824) | (0.96, -0.029, P = 0.81, N = 859) |
rs7208186(T)/17:10680890* | CTC-297N7.5 | (0.86, 0.014, P = 6.3e-08, N = 7824) | (0.57, 0.038, P = 0.44, N = 859) |
rs8077659(A)/17:13042271 | intergenic | (0.36, 0.0073, P = 3.7e-05, N = 7824) | (0.19, 0.035, P = 0.59, N = 859) |
rs8080958(A)/17:27508704 | MYO18A | (0.55, -0.0073, P = 2.7e-05, N = 7824) | (0.83, 0.096, P = 0.13, N = 859) |
rs1984518(T)/17:41521666 | MIR2117 | (0.58, -0.0074, P = 2.9e-05, N = 7824) | (0.55, 0.023, P = 0.64, N = 859) |
rs7209219(A)/17:66300683 | ARSG | (0.87, -0.013, P = 4.2e-05, N = 7824) | (0.88, -0.038, P = 0.61, N = 859) |
rs1859930(T)/17:70334561 | RP11-1124B17.1 | (0.59, 0.0077, P = 1.2e-05, N = 7824) | (0.57, -0.077, P = 0.11, N = 859) |
rs12955313(T)/18:11952865* | intergenic | (0.069, -0.29, P = 8.3e-06, N = 1957) | (0.061, 0.038, P = 0.71, N = 859) |
rs55928301(A)/18:25277047 | intergenic | (0.055, 0.35, P = 2.1e-06, N = 1957) | (0.19, 0.068, P = 0.26, N = 859) |
rs2612561(T)/18:42982959* | SLC14A2 | (0.45, 0.0074, P = 2.7e-05, N = 7824) | (0.48, -0.03, P = 0.54, N = 859) |
rs34467380(T)/18:6472786 | intergenic | (0.2, -0.19, P = 4.2e-06, N = 1957) | (0.26, 0.13, P = 0.017, N = 859) |
rs7241461(T)/18:74778515* | MBP | (0.47, 0.0074, P = 2.1e-05, N = 7824) | (0.42, 0.036, P = 0.48, N = 859) |
rs12984032(T)/19:19809147 | CTC-412M14.6 | (0.76, 0.011, P = 2.5e-05, N = 7824) | (0.73, -0.064, P = 0.23, N = 859) |
rs4801654(A)/19:56483863 | NLRP8 | (0.086, 0.014, P = 2.6e-05, N = 7824) | (0.18, -0.0035, P = 0.95, N = 859) |
rs56375520(T)/19:58434877 | ZNF418 | (0.24, 0.19, P = 8.6e-06, N = 1957) | (0.25, 0.14, P = 0.0081, N = 859) |
rs10404819(A)/19:9227673* | OR7G1 | (0.17, -0.011, P = 1.9e-05, N = 7824) | (0.61, 0.036, P = 0.48, N = 859) |
rs10183099(A)/2:152245087 | intergenic | (0.64, -0.0084, P = 2.4e-06, N = 7824) | (0.9, 0.0098, P = 0.9, N = 859) |
rs2290368(T)/2:152266473 | RIF1 | (0.57, -0.0075, P = 2.2e-05, N = 7824) | (0.62, -0.046, P = 0.36, N = 859) |
rs1564080(A)/2:157529960 | intergenic | (0.32, 0.0079, P = 7.5e-06, N = 7824) | (0.45, 0.059, P = 0.23, N = 859) |
rs1615586(T)/2:161743385* | intergenic | (0.77, -0.02, P = 4.2e-06, N = 7824) | (0.8, 0.048, P = 0.42, N = 859) |
rs11684292(T)/2:172117094 | intergenic | (0.052, -0.02, P = 1e-05, N = 7824) | (0.037, 0.19, P = 0.12, N = 859) |
rs17476649(A)/2:17262830* | intergenic | (0.35, 0.0073, P = 3.5e-05, N = 7824) | (0.079, -0.028, P = 0.76, N = 859) |
rs1486239(A)/2:180631925 | ZNF385B | (0.41, -0.0075, P = 2.1e-05, N = 7824) | (0.6, -0.043, P = 0.37, N = 859) |
rs1534208(C)/2:185009665 | intergenic | (0.55, -0.16, P = 6.1e-06, N = 1957) | (0.15, -0.04, P = 0.55, N = 859) |
rs7573642(T)/2:213010332 | ERBB4 | (0.98, -0.048, P = 4.9e-05, N = 7824) | (0.75, -0.0041, P = 0.94, N = 859) |
rs7592552(C)/2:214563795 | SPAG16 | (0.4, 0.16, P = 4.8e-06, N = 1957) | (0.6, -0.044, P = 0.38, N = 859) |
rs142363454(TCA)/2:215286688* | VWC2L | (0.12, 0.23, P = 5.2e-06, N = 1957) | (0.41, -0.018, P = 0.71, N = 859) |
rs7601275(A)/2:239060766 | KLHL30 | (0.35, 0.15, P = 9e-06, N = 1957) | (0.68, 0.01, P = 0.84, N = 859) |
rs7560860(A)/2:42497679 | EML4 | (0.43, 0.0079, P = 6.4e-06, N = 7824) | (0.13, -0.04, P = 0.59, N = 859) |
rs4564826(A)/2:43058278* | AC098824.6 | (0.23, -0.19, P = 9.4e-06, N = 1957) | (0.22, 0.08, P = 0.17, N = 859) |
rs55684321(A)/2:4978939 | intergenic | (0.38, -0.15, P = 1e-06, N = 1957) | (0.17, -0.16, P = 0.015, N = 859) |
rs13388859(T)/2:81051251 | AC084193.1 | (0.011, 0.082, P = 1.3e-05, N = 7824) | (0.066, 0.13, P = 0.18, N = 859) |
rs408961(C)/20:15045215* | MACROD2 | (0.64, -0.0073, P = 3.1e-05, N = 7824) | (0.29, -0.067, P = 0.21, N = 859) |
rs6085052(T)/20:5239399 | intergenic | (0.98, -0.026, P = 3.3e-05, N = 7824) | (0.96, -0.11, P = 0.38, N = 859) |
rs6085132(T)/20:5344064 | intergenic | (0.97, -0.027, P = 4e-06, N = 7824) | (0.77, -0.014, P = 0.8, N = 859) |
rs6011169(C)/20:62456818 | ZBTB46 | (0.13, -0.011, P = 2.7e-05, N = 7824) | (0.29, -0.048, P = 0.36, N = 859) |
rs1009576(T)/21:16542572 | intergenic | (0.14, -0.28, P = 1.9e-06, N = 1957) | (0.75, 0.13, P = 0.016, N = 859) |
rs2823289(T)/21:16841195* | intergenic | (0.58, -0.0073, P = 4.4e-05, N = 7824) | (0.49, 0.047, P = 0.33, N = 859) |
rs17693038(T)/21:18820372 | C21orf37 | (0.06, 0.032, P = 1.3e-05, N = 7824) | (0.01, 0.12, P = 0.61, N = 859) |
rs228029(A)/21:44068362 | AP001626.2 | (0.38, 0.0072, P = 4.9e-05, N = 7824) | (0.24, -0.053, P = 0.34, N = 859) |
rs17742907(A)/22:18890615 | DGCR6 | (0.076, 0.017, P = 9.6e-06, N = 7824) | (0.036, 0.098, P = 0.45, N = 859) |
rs5747934(T)/22:18915282 | PRODH | (0.047, 0.071, P = 2e-44, N = 7824) | (0.2, -0.025, P = 0.68, N = 859) |
rs35059460(C)/22:18964791 | DGCR5 | (0.66, 0.21, P = 6.4e-09, N = 1957) | (0.5, 0.081, P = 0.08, N = 859) |
rs2518802(A)/22:18975345* | DGCR5 | (0.9, -0.053, P = 4.2e-59, N = 7824) | (0.86, 0.096, P = 0.18, N = 859) |
rs4819778(T)/22:19134083 | DGCR14 | (0.33, -0.0097, P = 5.5e-08, N = 7824) | (0.65, 0.087, P = 0.088, N = 859) |
rs9827536(T)/3:191846778 | intergenic | (0.63, 0.0075, P = 1.9e-05, N = 7824) | (0.28, -0.031, P = 0.56, N = 859) |
rs1394836(T)/3:192454733* | FGF12 | (0.6, 0.0083, P = 2.2e-06, N = 7824) | (0.84, -0.031, P = 0.64, N = 859) |
rs11129161(T)/3:24738868 | AC133680.1 | (0.59, 0.0078, P = 1.4e-05, N = 7824) | (0.73, -0.065, P = 0.23, N = 859) |
rs11716669(T)/3:60801815 | FHIT | (0.4, 0.18, P = 7.8e-06, N = 1957) | (0.24, -0.039, P = 0.48, N = 859) |
rs6798346(A)/3:73078044* | PPP4R2 | (0.63, -0.017, P = 8.8e-06, N = 7824) | (0.54, 0.0018, P = 0.97, N = 859) |
rs6769362(C)/3:99296437* | intergenic | (0.64, -0.0079, P = 7.8e-06, N = 7824) | (0.18, -0.093, P = 0.14, N = 859) |
rs10494317(T)/4:130094338* | RP11-378N18.1 | (0.69, -0.0075, P = 2.5e-05, N = 7824) | (0.71, -0.032, P = 0.55, N = 859) |
rs17314804(T)/4:140946828* | MAML3 | (0.35, -0.0074, P = 2.9e-05, N = 7824) | (0.082, 0.052, P = 0.54, N = 859) |
rs4580644(T)/4:15785201 | CD38 | (0.49, 0.016, P = 8.2e-06, N = 7824) | (0.66, -0.12, P = 0.023, N = 859) |
rs2286460(A)/4:15964040* | FGFBP2 | (0.54, -0.0075, P = 2e-05, N = 7824) | (0.43, 0.012, P = 0.8, N = 859) |
rs732224(T)/4:162783324 | FSTL5 | (0.51, 0.0072, P = 3.8e-05, N = 7824) | (0.53, 0.042, P = 0.39, N = 859) |
rs12503744(A)/4:172203928* | intergenic | (0.02, -0.055, P = 1.6e-05, N = 7824) | (0.32, -0.014, P = 0.78, N = 859) |
rs6853509(T)/4:188999227 | intergenic | (0.44, -0.0076, P = 2.2e-05, N = 7824) | (0.82, 0.044, P = 0.48, N = 859) |
rs10517422(T)/4:37405256* | KIAA1239 | (0.2, 0.21, P = 4.8e-06, N = 1957) | (0.02, 0.16, P = 0.35, N = 859) |
rs4860172(C)/4:60389483* | intergenic | (0.37, 0.0077, P = 1.5e-05, N = 7824) | (0.065, -0.026, P = 0.79, N = 859) |
rs6446553(T)/4:6942857 | TBC1D14 | (0.59, -0.0077, P = 1.8e-05, N = 7824) | (0.41, -0.027, P = 0.58, N = 859) |
rs10007509(A)/4:71171720 | intergenic | (0.07, -0.31, P = 1e-05, N = 1957) | (0.14, 0.056, P = 0.42, N = 859) |
rs10155062(A)/4:7133905* | intergenic | (0.33, 0.0073, P = 4.3e-05, N = 7824) | (0.59, 0.08, P = 0.1, N = 859) |
rs1363786(T)/5:102225196 | PAM | (0.07, 0.016, P = 1.1e-05, N = 7824) | (0.24, -0.0028, P = 0.96, N = 859) |
rs10073414(C)/5:108436526 | FER | (0.89, 0.025, P = 3.8e-05, N = 7824) | (0.87, -0.013, P = 0.85, N = 859) |
rs7702811(G)/5:125923056 | ALDH7A1 | (0.55, 0.15, P = 2.7e-07, N = 1957) | (0.92, 0.0087, P = 0.92, N = 859) |
rs4868254(T)/5:172732331 | intergenic | (0.43, -0.0076, P = 2.7e-05, N = 7824) | (0.54, 0.013, P = 0.78, N = 859) |
rs147198383(G)/5:17395773 | intergenic | (0.037, 0.4, P = 9.7e-07, N = 1957) | (0.011, 0.26, P = 0.27, N = 859) |
rs2935623(A)/5:2767556 | intergenic | (0.62, -0.0079, P = 8.7e-06, N = 7824) | (0.58, -0.043, P = 0.37, N = 859) |
rs10512634(A)/5:35987551 | UGT3A1 | (0.14, 0.012, P = 8.6e-06, N = 7824) | (0.023, -0.11, P = 0.49, N = 859) |
rs10941406(A)/5:38756294* | CTD-2127H9.1 | (0.34, 0.0074, P = 3.3e-05, N = 7824) | (0.41, -0.081, P = 0.097, N = 859) |
rs31242(T)/5:53368869* | ARL15 | (0.86, 0.011, P = 2.2e-05, N = 7824) | (0.92, -0.082, P = 0.35, N = 859) |
rs4395600(A)/5:53989831 | intergenic | (0.083, -0.014, P = 3.7e-05, N = 7824) | (0.15, -0.041, P = 0.53, N = 859) |
rs16900163(A)/5:71915010 | CTC-347C20.2 | (0.81, -0.018, P = 4.9e-05, N = 7824) | (0.74, -0.077, P = 0.17, N = 859) |
rs1650723(T)/5:79922030 | DHFR | (0.17, 0.011, P = 3e-05, N = 7824) | (0.065, 0.086, P = 0.38, N = 859) |
rs11963846(A)/6:112489446 | LAMA4 | (0.45, 0.008, P = 8.6e-06, N = 7824) | (0.8, -0.0083, P = 0.89, N = 859) |
rs9385646(T)/6:133725127 | EYA4 | (0.84, -0.23, P = 5.1e-06, N = 1957) | (0.42, -0.022, P = 0.66, N = 859) |
rs175866(T)/6:151225521* | MTHFD1L | (0.58, -0.0086, P = 1.1e-06, N = 7824) | (0.87, 0.13, P = 0.068, N = 859) |
rs4869824(C)/6:154758528* | CNKSR3 | (0.52, 0.0074, P = 1.8e-05, N = 7824) | (0.39, -0.05, P = 0.29, N = 859) |
rs7755193(A)/6:158644859* | intergenic | (0.15, -0.011, P = 2.9e-05, N = 7824) | (0.37, -0.026, P = 0.61, N = 859) |
rs9396897(A)/6:18668391 | intergenic | (0.63, 0.0072, P = 3.6e-05, N = 7824) | (0.69, -0.015, P = 0.78, N = 859) |
rs2185865(A)/6:18828241 | intergenic | (0.92, 0.018, P = 1.7e-07, N = 7824) | (0.85, -0.056, P = 0.4, N = 859) |
rs612262(T)/6:35891608* | SRPK1 | (0.36, -0.0073, P = 3.3e-05, N = 7824) | (0.73, -0.0042, P = 0.94, N = 859) |
rs12202955(A)/6:53299090 | intergenic | (0.51, -0.0074, P = 2.5e-05, N = 7824) | (0.37, -0.1, P = 0.039, N = 859) |
rs2145543(C)/6:66874550 | intergenic | (0.096, 0.36, P = 3.7e-06, N = 1957) | (0.16, 0.014, P = 0.83, N = 859) |
rs9360494(T)/6:72485205* | intergenic | (0.6, -0.0083, P = 2.7e-06, N = 7824) | (0.83, -0.0092, P = 0.88, N = 859) |
rs60933810(C)/7:120981502 | WNT16 | (0.1, 0.23, P = 8.3e-06, N = 1957) | (0.034, 0.13, P = 0.32, N = 859) |
rs10954090(T)/7:125529994 | intergenic | (0.15, 0.013, P = 4e-07, N = 7824) | (0.16, 0.0062, P = 0.92, N = 859) |
rs17167391(C)/7:133704633 | EXOC4 | (0.2, 0.17, P = 3.2e-06, N = 1957) | (0.039, -0.075, P = 0.54, N = 859) |
rs12540186(T)/7:141728622 | MGAM | (0.19, -0.011, P = 2.4e-05, N = 7824) | (0.18, -0.057, P = 0.38, N = 859) |
rs12333473(A)/7:144729497* | intergenic | (0.66, 0.0072, P = 4.6e-05, N = 7824) | (0.7, -0.039, P = 0.45, N = 859) |
rs4726811(C)/7:146540777* | CNTNAP2 | (0.22, 0.19, P = 2.9e-06, N = 1957) | (0.16, -0.0031, P = 0.96, N = 859) |
rs4509197(A)/7:26594653* | AC004947.2 | (0.36, -0.0075, P = 2.1e-05, N = 7824) | (0.27, -0.0094, P = 0.86, N = 859) |
rs1524385(T)/7:54084188 | intergenic | (0.17, 0.021, P = 3.8e-05, N = 7824) | (0.38, 0.097, P = 0.056, N = 859) |
rs6465597(C)/7:97180908* | intergenic | (0.069, 0.2, P = 9.2e-07, N = 1957) | (0.21, -0.042, P = 0.47, N = 859) |
rs13258818(T)/8:121639595* | SNTB1 | (0.63, 0.0073, P = 3.5e-05, N = 7824) | (0.13, -0.11, P = 0.14, N = 859) |
rs7819776(A)/8:135465833* | intergenic | (0.42, -0.0073, P = 2.9e-05, N = 7824) | (0.31, -0.014, P = 0.78, N = 859) |
rs11784679(T)/8:22831150* | RN7SL303P | (0.78, -0.012, P = 3.6e-06, N = 7824) | (0.95, 0.075, P = 0.49, N = 859) |
rs13258708(C)/8:3938103 | CSMD1 | (0.1, -0.014, P = 3.1e-05, N = 7824) | (0.023, 0.18, P = 0.27, N = 859) |
rs2445717(T)/8:95245949 | intergenic | (0.64, -0.0075, P = 2.1e-05, N = 7824) | (0.77, 0.02, P = 0.72, N = 859) |
rs2680218(T)/9:109998648* | intergenic | (0.46, -0.0077, P = 1.1e-05, N = 7824) | (0.29, -0.012, P = 0.82, N = 859) |
rs4978836(A)/9:112338981* | intergenic | (0.39, 0.009, P = 6.8e-06, N = 7824) | (0.31, 0.059, P = 0.25, N = 859) |
rs13285974(A)/9:119579217 | ASTN2 | (0.42, 0.0076, P = 1.7e-05, N = 7824) | (0.64, 0.12, P = 0.022, N = 859) |
rs10121207(T)/9:119990164* | ASTN2 | (0.48, 0.0075, P = 3e-05, N = 7824) | (0.56, 0.026, P = 0.59, N = 859) |
rs6478330(T)/9:120619093 | RP11-281A20.1 | (0.9, 0.014, P = 3.4e-05, N = 7824) | (0.95, 0.034, P = 0.76, N = 859) |
rs1928871(C)/9:12350794* | intergenic | (0.4, 0.0083, P = 2.8e-06, N = 7824) | (0.084, -0.12, P = 0.14, N = 859) |
rs1929425(T)/9:12367988* | intergenic | (0.4, 0.0072, P = 3.9e-05, N = 7824) | (0.71, -0.066, P = 0.21, N = 859) |
rs7029664(T)/9:132048953* | RP11-344B5.2 | (0.51, 0.0077, P = 9.7e-06, N = 7824) | (0.62, 0.034, P = 0.51, N = 859) |
rs776783(A)/9:18653316* | ADAMTSL1 | (0.97, -0.049, P = 1.7e-05, N = 7824) | (0.74, -0.061, P = 0.27, N = 859) |
rs12550887(G)/9:32344871 | intergenic | (0.18, -0.14, P = 2.3e-06, N = 1957) | (0.19, 0.013, P = 0.83, N = 859) |
rs11143935(T)/9:76966194 | intergenic | (0.33, 0.18, P = 7e-06, N = 1957) | (0.18, 0.014, P = 0.83, N = 859) |
rs7858706(T)/9:77966690 | intergenic | (0.5, -0.0077, P = 9.7e-06, N = 7824) | (0.14, 0.011, P = 0.87, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 161 | -0.01 (-0.096- 0.075) P=0.81 | 6.1 | 48 | 9.06 (0- 45.8) | NA | NA | 0.0011 P=0.84 |
MR-Egger | 161 | -0.015 (-0.11- 0.082) P=0.76 | 6.1 | 48 | 9.06 (0- 45.8) | 165 | 0.35 | 0.0011 P=0.84 |
Weighted median | 161 | 0.051 (-0.087- 0.19) P=0.47 | 6.1 | 48 | 9.06 (0- 45.8) | NA | NA | 0.0011 P=0.84 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.01 | 0.04 | -0.24 | 0.81 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 97 | -0.01 (-0.11- 0.093) P=0.85 | 7.5 | 36 | 16.2 (0- 93.7) | NA | NA | 0.0077 P=0.35 |
MR-Egger | 97 | -0.04 (-0.16- 0.08) P=0.51 | 7.5 | 36 | 16.2 (0- 93.7) | 121 | 0.04 | 0.0077 P=0.35 |
Weighted median | 97 | 0.068 (-0.084- 0.22) P=0.38 | 7.5 | 36 | 16.2 (0- 93.7) | NA | NA | 0.0077 P=0.35 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.01 | 0.05 | -0.19 | 0.85 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Pyruvic acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs12124783(T)/1:176891453* | ASTN1 | (0.25, 0.018, P = 3.5e-05, N = 7824) | (0.3, -0.022, P = 0.68, N = 859) |
rs764151(A)/1:20746568* | LINC01141 | (0.083, 0.029, P = 3.7e-05, N = 7824) | (0.17, -0.02, P = 0.76, N = 859) |
rs4648464(A)/1:3171929 | PRDM16 | (0.55, -0.016, P = 9.4e-06, N = 7824) | (0.13, -0.024, P = 0.74, N = 859) |
rs7085088(A)/10:112799928 | intergenic | (0.2, -0.018, P = 2.7e-05, N = 7824) | (0.29, 0.013, P = 0.8, N = 859) |
rs1327690(A)/10:6763749 | intergenic | (0.095, -0.026, P = 2.8e-05, N = 7824) | (0.016, -0.34, P = 0.064, N = 859) |
rs2488068(T)/10:94506628* | intergenic | (0.33, 0.018, P = 3.7e-05, N = 7824) | (0.38, -0.15, P = 0.0022, N = 859) |
rs11216267(T)/11:116952392* | SIK3 | (0.64, 0.017, P = 1.6e-06, N = 7824) | (0.15, -0.0017, P = 0.98, N = 859) |
rs7941871(T)/11:13228006 | intergenic | (0.84, -0.024, P = 1.6e-06, N = 7824) | (0.54, -0.042, P = 0.38, N = 859) |
rs922762(A)/11:13228375* | intergenic | (0.34, 0.017, P = 4e-05, N = 7824) | (0.34, -0.072, P = 0.16, N = 859) |
rs1983255(T)/11:1836032* | intergenic | (0.4, -0.015, P = 2e-05, N = 7824) | (0.6, -0.093, P = 0.056, N = 859) |
rs10835174(T)/11:3853473* | RHOG | (0.65, -0.015, P = 2.1e-05, N = 7824) | (0.77, 0.00046, P = 0.99, N = 859) |
rs11038739(A)/11:46017895* | PHF21A | (0.79, -0.02, P = 3e-06, N = 7824) | (0.9, 0.064, P = 0.44, N = 859) |
rs505621(A)/11:83277927* | DLG2 | (0.63, -0.014, P = 4.3e-05, N = 7824) | (0.87, -0.0015, P = 0.98, N = 859) |
rs16946212(T)/12:116200202 | RP11-110L15.1 | (0.79, -0.018, P = 1.9e-05, N = 7824) | (0.8, 0.016, P = 0.79, N = 859) |
rs3925033(T)/12:18456713 | PIK3C2G | (0.46, -0.016, P = 2.6e-06, N = 7824) | (0.58, 0.018, P = 0.73, N = 859) |
rs10505896(T)/12:23770330* | SOX5 | (0.88, 0.025, P = 2.3e-05, N = 7824) | (0.91, -0.002, P = 0.98, N = 859) |
rs12368229(A)/12:40747462* | LRRK2 | (0.15, 0.02, P = 4.7e-05, N = 7824) | (0.08, 0.068, P = 0.44, N = 859) |
rs11063657(A)/12:5517590 | RP11-1038A11.1 | (0.92, -0.028, P = 4.7e-05, N = 7824) | (0.98, -0.15, P = 0.35, N = 859) |
rs1305261(A)/12:81141819* | intergenic | (0.98, 0.16, P = 5.9e-06, N = 7824) | (0.82, -0.065, P = 0.29, N = 859) |
rs9558110(A)/13:104217164* | intergenic | (0.73, -0.02, P = 4.2e-05, N = 7824) | (0.96, -0.054, P = 0.65, N = 859) |
rs924483(A)/13:27061003* | intergenic | (0.092, -0.029, P = 3.3e-06, N = 7824) | (0.19, 0.053, P = 0.39, N = 859) |
rs868116(T)/13:70512698* | KLHL1 | (0.37, -0.015, P = 1.4e-05, N = 7824) | (0.51, -0.013, P = 0.78, N = 859) |
rs912857(T)/14:33657980* | NPAS3 | (0.54, 0.014, P = 4.7e-05, N = 7824) | (0.58, -0.055, P = 0.27, N = 859) |
rs8009583(T)/14:84765763 | intergenic | (0.77, 0.018, P = 1.5e-05, N = 7824) | (0.72, 0.044, P = 0.4, N = 859) |
rs1437543(A)/15:61468467* | RP11-39M21.1 | (0.25, 0.018, P = 2.2e-05, N = 7824) | (0.42, 0.035, P = 0.49, N = 859) |
rs8028830(A)/15:77508046* | PEAK1 | (0.85, -0.021, P = 2.9e-05, N = 7824) | (0.97, 0.1, P = 0.43, N = 859) |
rs11259923(A)/15:84535704 | ADAMTSL3 | (0.81, 0.042, P = 3.9e-06, N = 7824) | (0.72, 0.045, P = 0.4, N = 859) |
rs2198307(T)/15:87237609* | AGBL1 | (0.47, -0.014, P = 4.7e-05, N = 7824) | (0.87, -0.019, P = 0.79, N = 859) |
rs7206138(T)/16:26504692 | intergenic | (0.64, -0.017, P = 4.5e-05, N = 7824) | (0.77, -0.017, P = 0.76, N = 859) |
rs2880608(A)/16:6028451* | RP11-420N3.2 | (0.5, 0.014, P = 4.3e-05, N = 7824) | (0.77, -0.074, P = 0.21, N = 859) |
rs6503455(T)/17:44140748* | KANSL1 | (0.4, -0.014, P = 4.4e-05, N = 7824) | (0.25, -0.098, P = 0.074, N = 859) |
rs4794245(T)/17:49461290* | intergenic | (0.26, -0.019, P = 1.1e-05, N = 7824) | (0.38, -0.048, P = 0.34, N = 859) |
rs4790946(T)/17:63366847* | intergenic | (0.23, 0.036, P = 3.6e-05, N = 7824) | (0.16, 0.068, P = 0.3, N = 859) |
rs334384(T)/18:7137068* | SLC25A51P2 | (0.79, -0.018, P = 3.7e-05, N = 7824) | (0.85, 0.09, P = 0.18, N = 859) |
rs2115100(C)/19:48522894* | ELSPBP1 | (0.5, 0.015, P = 3.9e-05, N = 7824) | (0.69, -0.0079, P = 0.88, N = 859) |
rs2445857(T)/19:58708507* | ZNF274 | (0.089, -0.028, P = 1.5e-05, N = 7824) | (0.28, -0.042, P = 0.43, N = 859) |
rs10500204(A)/19:7182963* | INSR | (0.72, 0.017, P = 4.7e-05, N = 7824) | (0.8, -0.079, P = 0.18, N = 859) |
rs6743415(A)/2:15826092* | AC008271.1 | (0.49, 0.015, P = 3.9e-05, N = 7824) | (0.68, 0.091, P = 0.081, N = 859) |
rs780094(T)/2:27741237* | GCKR | (0.39, 0.015, P = 1.6e-05, N = 7824) | (0.17, -0.11, P = 0.083, N = 859) |
rs6432031(A)/2:9831131 | RP11-521D12.2 | (0.11, 0.029, P = 2.9e-05, N = 7824) | (0.19, -0.071, P = 0.25, N = 859) |
rs6055991(A)/20:8655834* | PLCB1 | (0.81, -0.021, P = 3.3e-05, N = 7824) | (0.94, 0.014, P = 0.9, N = 859) |
rs4816172(T)/20:9742096* | PAK7 | (0.85, -0.026, P = 2.3e-05, N = 7824) | (0.92, 0.025, P = 0.78, N = 859) |
rs2833657(A)/21:33478113* | LINC00159 | (0.83, 0.024, P = 3e-06, N = 7824) | (0.72, 0.0038, P = 0.94, N = 859) |
rs2252264(A)/22:18640203 | USP18 | (0.94, 0.07, P = 4.4e-05, N = 7824) | (0.76, 0.11, P = 0.056, N = 859) |
rs7631540(T)/3:113830519* | intergenic | (0.48, -0.015, P = 2.5e-05, N = 7824) | (0.16, -0.021, P = 0.74, N = 859) |
rs1133034(T)/3:182640615* | ATP11B | (0.076, 0.032, P = 3.9e-06, N = 7824) | (0.22, 0.069, P = 0.25, N = 859) |
rs2880322(T)/4:108991375* | LEF1 | (0.088, -0.026, P = 3.6e-05, N = 7824) | (0.35, 0.03, P = 0.55, N = 859) |
rs11131981(T)/4:181186334* | intergenic | (0.38, -0.02, P = 3.4e-05, N = 7824) | (0.2, -0.027, P = 0.65, N = 859) |
rs12515830(T)/5:101178314* | intergenic | (0.87, 0.024, P = 5.8e-06, N = 7824) | (0.98, -0.16, P = 0.33, N = 859) |
rs6895278(T)/5:147122020* | JAKMIP2 | (0.34, 0.017, P = 4.1e-06, N = 7824) | (0.21, 0.1, P = 0.083, N = 859) |
rs2964063(T)/5:173859251* | RP11-267A15.1 | (0.99, -0.073, P = 2.2e-06, N = 7824) | (0.93, 0.027, P = 0.77, N = 859) |
rs2925703(A)/5:6286005* | HMGB3P3 | (0.81, -0.018, P = 3.6e-05, N = 7824) | (0.66, 0.075, P = 0.14, N = 859) |
rs7715701(C)/5:92717972 | intergenic | (0.013, -0.15, P = 1.3e-05, N = 7824) | (0.48, 0.031, P = 0.53, N = 859) |
rs13195863(A)/6:100393761* | MCHR2 | (0.2, 0.022, P = 4.1e-07, N = 7824) | (0.36, 0.05, P = 0.33, N = 859) |
rs11753541(A)/6:154126010 | intergenic | (0.82, 0.039, P = 2.8e-05, N = 7824) | (0.97, -0.029, P = 0.83, N = 859) |
rs9505008(T)/6:7033860* | intergenic | (0.59, 0.014, P = 4.2e-05, N = 7824) | (0.25, 0.074, P = 0.18, N = 859) |
rs1316976(A)/6:73572196* | KCNQ5 | (0.49, 0.015, P = 3e-05, N = 7824) | (0.67, -0.02, P = 0.69, N = 859) |
rs2207444(A)/6:99513061 | intergenic | (0.7, 0.018, P = 2.4e-05, N = 7824) | (0.6, 0.032, P = 0.52, N = 859) |
rs848853(A)/7:108993043 | intergenic | (0.07, -0.03, P = 4.8e-05, N = 7824) | (0.34, 0.026, P = 0.62, N = 859) |
rs6979475(A)/7:24917974 | OSBPL3 | (0.25, 0.017, P = 4.7e-05, N = 7824) | (0.21, -0.06, P = 0.31, N = 859) |
rs10237319(T)/7:4073601* | SDK1 | (0.15, 0.023, P = 9.8e-06, N = 7824) | (0.51, -0.094, P = 0.05, N = 859) |
rs13247447(A)/7:5698964 | RNF216 | (0.44, 0.015, P = 2.3e-05, N = 7824) | (0.16, 0.015, P = 0.82, N = 859) |
rs7813799(C)/8:135396144* | intergenic | (0.43, -0.015, P = 2.5e-05, N = 7824) | (0.38, -0.047, P = 0.34, N = 859) |
rs2748410(A)/8:142503676* | MROH5 | (0.68, -0.032, P = 3.2e-05, N = 7824) | (0.62, 0.094, P = 0.062, N = 859) |
rs937970(T)/8:22770139 | PEBP4 | (0.47, 0.017, P = 3.7e-05, N = 7824) | (0.6, -0.011, P = 0.82, N = 859) |
rs2350463(A)/8:39640851 | ADAM2 | (0.82, -0.041, P = 2.9e-05, N = 7824) | (0.96, -0.33, P = 0.012, N = 859) |
rs13283334(A)/9:117531782* | intergenic | (0.3, -0.018, P = 2.7e-05, N = 7824) | (0.088, 0.062, P = 0.45, N = 859) |
rs1948080(T)/9:11852043* | intergenic | (0.62, -0.015, P = 3.3e-05, N = 7824) | (0.87, -0.088, P = 0.21, N = 859) |
rs2809428(A)/9:129001029* | intergenic | (0.67, -0.018, P = 1.5e-05, N = 7824) | (0.89, -0.037, P = 0.63, N = 859) |
rs9406589(T)/9:16222313 | C9orf92 | (0.88, -0.024, P = 2.6e-05, N = 7824) | (0.75, 0.091, P = 0.1, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 70 | -0.12 (-0.55- 0.3) P=0.56 | 1.3 | 1.2 | 5.87 (0- 64) | NA | NA | 0.0024 P=0.83 |
MR-Egger | 70 | -0.17 (-0.77- 0.43) P=0.58 | 1.3 | 1.2 | 5.87 (0- 64) | 83 | 0.11 | 0.0024 P=0.83 |
Weighted median | 70 | -0.3 (-0.87- 0.27) P=0.31 | 1.3 | 1.2 | 5.87 (0- 64) | NA | NA | 0.0024 P=0.83 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.12 | 0.22 | -0.58 | 0.56 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 21 | 0.095 (-0.48- 0.67) P=0.75 | 1.7 | 0.47 | 12.7 (0- 78.5) | NA | NA | 0.0054 P=0.79 |
MR-Egger | 21 | 0.015 (-0.82- 0.85) P=0.97 | 1.7 | 0.47 | 12.7 (0- 78.5) | 23 | 0.24 | 0.0054 P=0.79 |
Weighted median | 21 | -0.03 (-0.73- 0.67) P=0.93 | 1.7 | 0.47 | 12.7 (0- 78.5) | NA | NA | 0.0054 P=0.79 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.09 | 0.29 | 0.32 | 0.75 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Quinolinic acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs76358452(G)/1:11052159 | CFL1P6 | (0.027, 0.6, P = 1.1e-06, N = 1925) | (0.46, -0.017, P = 0.73, N = 859) |
rs557549(C)/10:115138169* | intergenic | (0.99, 0.21, P = 1.7e-06, N = 1925) | (0.64, -0.062, P = 0.23, N = 859) |
rs16921251(T)/10:21201598 | NEBL | (0.012, -0.78, P = 1.8e-07, N = 1925) | (0.1, -0.15, P = 0.063, N = 859) |
rs35350651(AC)/12:111907431* | ATXN2 | (0.5, -0.11, P = 2.6e-06, N = 1925) | (0.93, 0.026, P = 0.77, N = 859) |
rs76795319(C)/12:24821381* | intergenic | (0.022, -0.62, P = 4e-06, N = 1925) | (0.07, 0.12, P = 0.2, N = 859) |
rs373374952(CGT)/12:76934267 | OSBPL8 | (0.023, -0.57, P = 4.9e-06, N = 1925) | (0.46, 0.077, P = 0.11, N = 859) |
rs12100998(A)/14:74050925 | intergenic | (0.018, -0.45, P = 7.3e-06, N = 1925) | (0.36, 0.058, P = 0.23, N = 859) |
rs576870357(CA)/16:9032196 | USP7 | (0.032, 0.37, P = 3e-06, N = 1925) | (0.13, 0.039, P = 0.58, N = 859) |
rs62123404(A)/19:23738581 | ZNF675 | (0.099, -0.31, P = 5.2e-07, N = 1925) | (0.013, 0.34, P = 0.11, N = 859) |
rs113615666(CT)/2:29375775* | CLIP4 | (0.34, 0.19, P = 4.2e-06, N = 1925) | (0.2, 0.0023, P = 0.97, N = 859) |
rs55849091(G)/2:60600972 | AC007381.2 | (0.14, 0.3, P = 9.7e-08, N = 1925) | (0.16, 0.13, P = 0.053, N = 859) |
rs13039318(C)/20:3737232 | C20orf27 | (0.26, -0.22, P = 7.8e-06, N = 1925) | (0.49, 0.067, P = 0.15, N = 859) |
rs137076(C)/22:42976456 | POLDIP3 | (0.11, -0.2, P = 8e-06, N = 1925) | (0.31, 0.075, P = 0.16, N = 859) |
rs5852001(CT)/3:115957699 | LSAMP | (0.44, -0.1, P = 3.6e-07, N = 1925) | (0.49, -0.016, P = 0.74, N = 859) |
rs78044678(G)/3:166732391 | intergenic | (0.023, -0.46, P = 5.2e-06, N = 1925) | (0.042, 0.067, P = 0.58, N = 859) |
rs6444180(C)/3:186607448* | intergenic | (0.96, 0.27, P = 6.6e-06, N = 1925) | (0.94, -0.19, P = 0.05, N = 859) |
rs529207629(AT)/3:189833176 | LEPREL1 | (0.098, -0.23, P = 5e-06, N = 1925) | (0.11, -0.071, P = 0.35, N = 859) |
rs140021783(T)/4:158544831 | intergenic | (0.032, 0.33, P = 7.3e-06, N = 1925) | (0.011, -0.45, P = 0.053, N = 859) |
rs143827831(G)/4:69556127 | intergenic | (0.17, -0.22, P = 3.7e-06, N = 1925) | (0.04, 0.085, P = 0.49, N = 859) |
rs2306447(G)/4:9499419 | UNC93B7 | (0.88, 0.25, P = 5e-06, N = 1925) | (0.57, -0.0013, P = 0.98, N = 859) |
rs35391681(C)/5:117845902 | CTD-2281M20.1 | (0.091, -0.28, P = 4.7e-06, N = 1925) | (0.089, -0.082, P = 0.34, N = 859) |
rs60689100(T)/5:159718987 | CCNJL | (0.097, -0.27, P = 2.5e-06, N = 1925) | (0.21, 0.12, P = 0.05, N = 859) |
rs10940993(G)/5:32020001* | PDZD2 | (0.63, 0.17, P = 8.2e-06, N = 1925) | (0.2, 0.012, P = 0.85, N = 859) |
rs34922076(C)/5:40897141 | intergenic | (0.24, -0.2, P = 2.5e-06, N = 1925) | (0.037, 0.17, P = 0.18, N = 859) |
rs62427973(A)/6:121904036 | RNU2-8P | (0.2, -0.17, P = 1.1e-06, N = 1925) | (0.03, -0.047, P = 0.74, N = 859) |
rs662138(G)/6:160564476* | SLC22A1 | (0.17, -0.29, P = 5.9e-08, N = 1925) | (0.054, -0.099, P = 0.35, N = 859) |
rs7761574(C)/6:33843039* | LINC01016 | (0.26, 0.19, P = 7.5e-06, N = 1925) | (0.45, 0.0096, P = 0.84, N = 859) |
rs35559950(G)/7:148162915 | intergenic | (0.24, 0.17, P = 9.7e-06, N = 1925) | (0.095, 0.04, P = 0.63, N = 859) |
rs35716920(A)/7:89574638 | STEAP2-AS1 | (0.07, 0.29, P = 5.6e-06, N = 1925) | (0.15, -0.11, P = 0.11, N = 859) |
rs4472563(C)/8:1893021 | ARHGEF10 | (0.034, -0.4, P = 9.1e-06, N = 1925) | (0.17, -0.015, P = 0.82, N = 859) |
rs149173925(G)/8:55718870 | RP11-56A10.1 | (0.011, -0.69, P = 8.5e-06, N = 1925) | (0.07, 0.17, P = 0.076, N = 859) |
rs1121220(G)/8:96592156* | KB-1047C11.2 | (0.41, -0.19, P = 7.3e-08, N = 1925) | (0.28, 0.027, P = 0.61, N = 859) |
rs2197049(T)/9:10143304 | PTPRD | (0.14, -0.21, P = 7.6e-06, N = 1925) | (0.11, 0.058, P = 0.45, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 33 | -0.074 (-0.15- -4.6e-05) P=0.05 | 24 | 40 | 19.9 (0- 67.1) | NA | NA | -0.017 P=0.54 |
MR-Egger | 33 | -0.03 (-0.19- 0.13) P=0.71 | 24 | 40 | 19.9 (0- 67.1) | 40 | 0.13 | -0.017 P=0.54 |
Weighted median | 33 | -0.094 (-0.2- 0.0089) P=0.073 | 24 | 40 | 19.9 (0- 67.1) | NA | NA | -0.017 P=0.54 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.07 | 0.04 | -1.96 | 0.06 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 24 | -0.063 (-0.15- 0.022) P=0.15 | 23 | 29 | 28.9 (0- 80.5) | NA | NA | -0.026 P=0.49 |
MR-Egger | 24 | -0.002 (-0.19- 0.19) P=0.98 | 23 | 29 | 28.9 (0- 80.5) | 33 | 0.06 | -0.026 P=0.49 |
Weighted median | 24 | -0.082 (-0.19- 0.027) P=0.14 | 23 | 29 | 28.9 (0- 80.5) | NA | NA | -0.026 P=0.49 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.06 | 0.04 | -1.45 | 0.16 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Salicyluric acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs2138800(A)/1:102981095* | intergenic | (0.98, -0.94, P = 1.5e-05, N = 7824) | (0.8, 0.03, P = 0.63, N = 859) |
rs10886877(T)/10:85425691 | intergenic | (0.91, -0.17, P = 1.7e-06, N = 7824) | (0.97, -0.32, P = 0.034, N = 859) |
rs11824477(T)/11:111103318 | intergenic | (0.58, 0.095, P = 9.6e-06, N = 7824) | (0.65, 0.002, P = 0.97, N = 859) |
rs2283208(A)/11:2743859* | KCNQ1 | (0.49, -0.081, P = 4.2e-05, N = 7824) | (0.24, 0.034, P = 0.53, N = 859) |
rs2126432(A)/11:38205040* | intergenic | (0.99, -0.46, P = 3.6e-05, N = 7824) | (0.77, -0.05, P = 0.38, N = 859) |
rs11105725(T)/12:91045724 | intergenic | (0.3, -0.11, P = 1.7e-05, N = 7824) | (0.041, -0.094, P = 0.44, N = 859) |
rs9599763(A)/13:35440514 | intergenic | (0.036, 0.24, P = 1.7e-05, N = 7824) | (0.3, -0.047, P = 0.38, N = 859) |
rs9534848(T)/13:48431473 | intergenic | (0.51, -0.23, P = 1.7e-05, N = 7824) | (0.15, 0.039, P = 0.56, N = 859) |
rs9599057(A)/13:66611146* | intergenic | (0.91, -0.14, P = 3.8e-05, N = 7824) | (0.99, -0.23, P = 0.33, N = 859) |
rs1713440(A)/14:20875269* | TEP1 | (0.34, -0.089, P = 4e-05, N = 7824) | (0.76, 0.077, P = 0.15, N = 859) |
rs1951656(T)/14:54530629* | intergenic | (0.99, -0.42, P = 2.2e-06, N = 7824) | (0.68, 0.1, P = 0.052, N = 859) |
rs6574873(C)/14:86611700 | intergenic | (0.02, 1.1, P = 1.1e-05, N = 7824) | (0.11, 0.016, P = 0.84, N = 859) |
rs17114742(C)/15:25058590* | intergenic | (0.13, 0.12, P = 3.6e-05, N = 7824) | (0.26, 0.024, P = 0.66, N = 859) |
rs1484976(T)/15:25839363* | intergenic | (0.98, -0.34, P = 9.5e-06, N = 7824) | (0.98, -0.14, P = 0.39, N = 859) |
rs7178993(A)/15:25844529* | intergenic | (0.98, -0.32, P = 1.2e-05, N = 7824) | (0.92, 0.011, P = 0.9, N = 859) |
rs3093322(C)/16:27445360 | IL21R | (0.18, -0.14, P = 2e-05, N = 7824) | (0.045, -0.1, P = 0.38, N = 859) |
rs37058(A)/16:58563199* | CNOT1 | (0.069, 0.19, P = 5.3e-06, N = 7824) | (0.023, 0.011, P = 0.94, N = 859) |
rs10420258(T)/19:33602757 | GPATCH1 | (0.14, 0.11, P = 4.3e-05, N = 7824) | (0.1, 0.019, P = 0.81, N = 859) |
rs735507(A)/19:58720360* | ZNF274 | (0.81, -0.11, P = 4.6e-06, N = 7824) | (0.82, -0.054, P = 0.39, N = 859) |
rs12461352(A)/19:58869180 | ZNF497 | (0.47, 0.087, P = 2.6e-05, N = 7824) | (0.19, -0.018, P = 0.77, N = 859) |
rs12982977(A)/19:9043021* | MUC16 | (0.95, -0.38, P = 1.5e-05, N = 7824) | (0.84, -0.027, P = 0.68, N = 859) |
rs2293220(T)/2:152728509* | CACNB4 | (0.014, 0.41, P = 1.5e-05, N = 7824) | (0.17, -0.13, P = 0.04, N = 859) |
rs219633(A)/21:27868059 | CYYR1 | (0.12, 0.15, P = 6e-07, N = 7824) | (0.47, -0.033, P = 0.5, N = 859) |
rs9977045(T)/21:43363686* | C2CD2 | (0.6, 0.086, P = 3.4e-05, N = 7824) | (0.51, 0.037, P = 0.45, N = 859) |
rs4858919(T)/3:162362878 | intergenic | (0.89, -0.13, P = 2.1e-05, N = 7824) | (0.97, -0.099, P = 0.5, N = 859) |
rs9848396(A)/3:164977695* | RP11-85M11.2 | (0.23, 0.095, P = 2.8e-05, N = 7824) | (0.13, -0.061, P = 0.39, N = 859) |
rs3964616(A)/3:181691234 | RP11-416O18.1 | (0.7, -0.25, P = 3.6e-05, N = 7824) | (0.75, -0.012, P = 0.83, N = 859) |
rs7663798(A)/4:141715430* | intergenic | (0.049, 0.2, P = 7.2e-06, N = 7824) | (0.068, 0.057, P = 0.55, N = 859) |
rs530424(T)/4:176124914* | intergenic | (0.97, -0.8, P = 2.6e-05, N = 7824) | (0.85, -0.13, P = 0.042, N = 859) |
rs919028(A)/4:99208331 | RAP1GDS1 | (0.95, -0.55, P = 8.7e-06, N = 7824) | (0.93, -0.052, P = 0.59, N = 859) |
rs6895553(T)/5:114821667 | CTB-161J7.1 | (0.95, -0.2, P = 1.3e-05, N = 7824) | (0.62, -0.021, P = 0.67, N = 859) |
rs2961632(A)/5:136640875 | SPOCK1 | (0.39, -0.081, P = 4.3e-05, N = 7824) | (0.43, -0.033, P = 0.5, N = 859) |
rs17317833(A)/5:67533624* | PIK3R1 | (0.14, -0.12, P = 1.4e-05, N = 7824) | (0.046, -0.048, P = 0.68, N = 859) |
rs3800052(T)/6:1773297* | GMDS | (0.085, 0.17, P = 5.5e-06, N = 7824) | (0.019, -0.096, P = 0.59, N = 859) |
rs17537088(T)/7:128027749 | IMPDH1 | (0.85, -0.12, P = 2.2e-05, N = 7824) | (0.96, -0.17, P = 0.18, N = 859) |
rs10258070(T)/7:15318473* | AGMO | (0.72, -0.09, P = 1.7e-05, N = 7824) | (0.18, -0.072, P = 0.25, N = 859) |
rs2470997(A)/7:47432942 | TNS3 | (0.72, -0.09, P = 1.8e-05, N = 7824) | (0.96, 0.06, P = 0.62, N = 859) |
rs6944358(T)/7:5814178* | RNF216 | (0.47, -0.084, P = 1.1e-05, N = 7824) | (0.3, 0.023, P = 0.66, N = 859) |
rs1179620(T)/7:75252714* | HIP1 | (0.55, 0.083, P = 1.2e-05, N = 7824) | (0.47, 0.045, P = 0.37, N = 859) |
rs17682068(A)/8:119398255* | SAMD12 | (0.92, -0.18, P = 1.5e-07, N = 7824) | (0.99, -0.12, P = 0.56, N = 859) |
rs7839700(A)/8:127096690 | intergenic | (0.96, -0.21, P = 2e-05, N = 7824) | (0.93, 0.048, P = 0.62, N = 859) |
rs2244320(A)/8:18670908 | PSD3 | (0.95, -0.22, P = 4.6e-05, N = 7824) | (0.95, -0.24, P = 0.026, N = 859) |
rs7003385(T)/8:41586750 | ANK1 | (0.66, -0.086, P = 1.5e-05, N = 7824) | (0.89, -0.026, P = 0.74, N = 859) |
rs7016707(T)/8:41586822 | ANK1 | (0.099, 0.14, P = 5.8e-06, N = 7824) | (0.36, -0.052, P = 0.3, N = 859) |
rs7049159(T)/9:91266181 | RP13-60M5.2 | (0.17, 0.3, P = 4.3e-05, N = 7824) | (0.49, 0.016, P = 0.74, N = 859) |
rs10993714(A)/9:93613106* | SYK | (0.98, -0.29, P = 4.3e-05, N = 7824) | (0.88, 0.0054, P = 0.94, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 46 | 0.013 (-0.044- 0.071) P=0.65 | 66 | 38 | 7.84 (0- 40.6) | NA | NA | 0.0037 P=0.8 |
MR-Egger | 46 | 0.005 (-0.084- 0.094) P=0.91 | 66 | 38 | 7.84 (0- 40.6) | 41 | 0.62 | 0.0037 P=0.8 |
Weighted median | 46 | 0.0079 (-0.084- 0.1) P=0.87 | 66 | 38 | 7.84 (0- 40.6) | NA | NA | 0.0037 P=0.8 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.01 | 0.03 | 0.45 | 0.65 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 22 | 0.027 (-0.063- 0.12) P=0.55 | 82 | 22 | 0 (0- 72.4) | NA | NA | 0.006 P=0.78 |
MR-Egger | 22 | 0.012 (-0.14- 0.16) P=0.88 | 82 | 22 | 0 (0- 72.4) | 17 | 0.64 | 0.006 P=0.78 |
Weighted median | 22 | 0.017 (-0.13- 0.16) P=0.82 | 82 | 22 | 0 (0- 72.4) | NA | NA | 0.006 P=0.78 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.03 | 0.05 | 0.59 | 0.56 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-Serine (Shin et al/Long et al) | eGFR (CSSCD) |
rs1163251(T)/1:120209755* | PHGDH | (0.6, 0.019, P = 7.1e-27, N = 7824) | (0.86, 0.026, P = 0.71, N = 859) |
rs3790707(T)/1:120264573* | PHGDH | (0.027, 0.27, P = 6.1e-09, N = 1957) | (0.069, -0.048, P = 0.62, N = 859) |
rs12144094(C)/1:120264823 | PHGDH | (0.85, -0.016, P = 1.8e-07, N = 7824) | (0.97, 0.046, P = 0.76, N = 859) |
rs921516(A)/1:195854637* | intergenic | (0.51, 0.0079, P = 8.4e-06, N = 7824) | (0.32, -0.027, P = 0.61, N = 859) |
rs10863629(A)/1:221682419* | RP11-103C3.1 | (0.74, 0.01, P = 1.8e-05, N = 7824) | (0.92, -0.07, P = 0.43, N = 859) |
rs454774(T)/1:30923203* | intergenic | (0.025, -0.047, P = 2.4e-05, N = 7824) | (0.28, -0.046, P = 0.41, N = 859) |
rs841845(T)/1:43404713* | SLC2A1 | (0.78, 0.011, P = 9.2e-06, N = 7824) | (0.65, -0.018, P = 0.71, N = 859) |
rs6576936(A)/1:84191562 | RP11-475O6.1 | (0.3, 0.016, P = 1.6e-05, N = 7824) | (0.3, 0.0092, P = 0.86, N = 859) |
rs12784903(A)/10:124956180* | intergenic | (0.19, 0.011, P = 1.2e-05, N = 7824) | (0.03, -0.22, P = 0.12, N = 859) |
rs11248451(T)/10:124973893 | AC012391.1 | (0.2, 0.0099, P = 4.6e-05, N = 7824) | (0.036, -0.14, P = 0.3, N = 859) |
rs943097(A)/10:13723773 | FRMD4A | (0.19, 0.01, P = 4.1e-05, N = 7824) | (0.028, -0.011, P = 0.94, N = 859) |
rs2277251(T)/10:31996242 | RP11-472N13.3 | (0.46, 0.0079, P = 9.7e-06, N = 7824) | (0.5, 0.035, P = 0.47, N = 859) |
rs7908297(A)/10:5251702* | AKR1C4 | (0.11, 0.016, P = 1.6e-06, N = 7824) | (0.033, -0.34, P = 0.013, N = 859) |
rs11000319(C)/10:53726843 | PRKG1 | (0.19, -0.23, P = 4.1e-06, N = 1957) | (0.11, 0.1, P = 0.17, N = 859) |
rs4747042(A)/10:72263690 | PALD1 | (0.48, -0.0076, P = 1.3e-05, N = 7824) | (0.39, 0.037, P = 0.44, N = 859) |
rs580333(A)/10:84643651* | NRG3 | (0.49, 0.0082, P = 1.8e-06, N = 7824) | (0.8, 0.084, P = 0.16, N = 859) |
rs2632003(A)/11:11338853* | GALNT18 | (0.95, -0.02, P = 2.7e-05, N = 7824) | (0.8, -0.07, P = 0.24, N = 859) |
rs450208(T)/11:2931981 | SLC22A18 | (0.79, 0.01, P = 2.8e-05, N = 7824) | (0.85, 0.0037, P = 0.96, N = 859) |
rs1874795(A)/11:80729659 | intergenic | (0.43, -0.0083, P = 2.3e-06, N = 7824) | (0.15, 0.024, P = 0.73, N = 859) |
rs7114828(T)/11:95717607 | MAML2 | (0.041, -0.022, P = 4.2e-05, N = 7824) | (0.4, -0.06, P = 0.22, N = 859) |
rs12369136(A)/12:20576874 | PDE3A | (0.99, 0.092, P = 2.1e-05, N = 7824) | (0.99, -0.18, P = 0.38, N = 859) |
rs1042725(T)/12:66358347* | HMGA2 | (0.5, -0.0085, P = 8e-07, N = 7824) | (0.38, -0.038, P = 0.44, N = 859) |
rs7305455(C)/12:73599986* | RP11-314D7.2 | (0.07, 0.018, P = 1.1e-05, N = 7824) | (0.26, 0.02, P = 0.71, N = 859) |
rs142170634(TATA)/12:94701019 | PLXNC1 | (0.19, -0.22, P = 3.2e-06, N = 1957) | (0.019, 0.016, P = 0.93, N = 859) |
rs10478(T)/13:30777202* | KATNAL1 | (0.54, -0.0071, P = 3.8e-05, N = 7824) | (0.88, -0.037, P = 0.62, N = 859) |
rs540497(T)/13:80905334 | SPRY2 | (0.033, -0.041, P = 1.9e-05, N = 7824) | (0.35, 0.013, P = 0.8, N = 859) |
rs440371(C)/13:89058784 | intergenic | (0.99, 0.038, P = 2.5e-05, N = 7824) | (0.93, -0.049, P = 0.61, N = 859) |
rs4773797(T)/13:95136420* | DCT | (0.55, 0.0072, P = 3.5e-05, N = 7824) | (0.29, 0.013, P = 0.81, N = 859) |
rs10483419(T)/14:33168063* | AKAP6 | (0.44, -0.0074, P = 2.1e-05, N = 7824) | (0.23, -0.087, P = 0.14, N = 859) |
rs12433855(A)/14:49051094 | intergenic | (0.51, -0.0073, P = 3.3e-05, N = 7824) | (0.54, -0.052, P = 0.29, N = 859) |
rs268817(A)/14:58029965* | SLC35F4 | (0.27, 0.01, P = 2e-05, N = 7824) | (0.047, 0.2, P = 0.078, N = 859) |
rs59356185(A)/15:30985526 | ARHGAP11B | (0.17, 0.76, P = 3.6e-06, N = 1957) | (0.3, -0.042, P = 0.42, N = 859) |
rs1457244(A)/15:37783906* | RP11-720L8.1 | (0.46, 0.0073, P = 2.9e-05, N = 7824) | (0.33, -0.0099, P = 0.84, N = 859) |
rs1143115(T)/15:93452297* | CHD2 | (0.53, -0.014, P = 3.5e-05, N = 7824) | (0.59, -0.054, P = 0.25, N = 859) |
rs1420235(T)/16:49691859 | ZNF423 | (0.16, -0.013, P = 2.5e-05, N = 7824) | (0.051, -0.11, P = 0.29, N = 859) |
rs6564181(A)/16:74905905* | WDR59 | (0.45, 0.0078, P = 8.2e-06, N = 7824) | (0.52, 0.0044, P = 0.93, N = 859) |
rs10514413(C)/16:77342569 | ADAMTS18 | (0.024, -0.27, P = 9.9e-06, N = 1957) | (0.029, 0.073, P = 0.62, N = 859) |
rs2959520(A)/18:19362376 | MIB1 | (0.98, -0.054, P = 3.7e-05, N = 7824) | (0.81, -0.072, P = 0.24, N = 859) |
rs4800190(T)/18:22453101* | RP11-449D8.5 | (0.85, 0.01, P = 4.4e-05, N = 7824) | (0.95, -0.036, P = 0.75, N = 859) |
rs11659824(T)/18:36729428 | intergenic | (0.5, 0.0071, P = 3.4e-05, N = 7824) | (0.23, 0.0068, P = 0.9, N = 859) |
rs1442089(A)/18:51107079* | RP11-202D1.2 | (0.91, -0.014, P = 1.9e-05, N = 7824) | (0.64, 0.028, P = 0.58, N = 859) |
rs34734297(A)/18:67283673 | DOK6 | (0.6, -0.26, P = 2e-06, N = 1957) | (0.55, -0.047, P = 0.33, N = 859) |
rs10426856(A)/19:33096406* | ANKRD27 | (0.9, -0.015, P = 4.2e-06, N = 7824) | (0.66, 0.058, P = 0.26, N = 859) |
rs12621772(T)/2:114913436 | intergenic | (0.23, 0.012, P = 1.2e-06, N = 7824) | (0.55, 0.044, P = 0.36, N = 859) |
rs6740983(T)/2:114913608 | intergenic | (0.78, -0.012, P = 1.2e-06, N = 7824) | (0.45, -0.043, P = 0.37, N = 859) |
rs6431176(T)/2:127533079 | intergenic | (0.36, -0.01, P = 8.3e-06, N = 7824) | (0.41, -0.011, P = 0.81, N = 859) |
rs7573748(T)/2:160701198* | LY75-CD302 | (0.83, -0.019, P = 2.4e-05, N = 7824) | (0.56, -0.074, P = 0.13, N = 859) |
rs12992925(A)/2:179860406 | CCDC141 | (0.58, 0.0084, P = 1.3e-06, N = 7824) | (0.21, 0.11, P = 0.052, N = 859) |
rs3900115(A)/2:202050677* | CASP10 | (0.48, 0.0074, P = 1.8e-05, N = 7824) | (0.5, 0.023, P = 0.62, N = 859) |
rs7579488(T)/2:207995116* | KLF7 | (0.9, 0.016, P = 3.7e-05, N = 7824) | (0.61, -0.035, P = 0.48, N = 859) |
rs715(T)/2:211543055* | CPS1 | (0.71, -0.022, P = 2.7e-21, N = 7824) | (0.81, -0.061, P = 0.33, N = 859) |
rs1990797(C)/2:211641068* | intergenic | (0.17, -0.011, P = 3.7e-05, N = 7824) | (0.024, -0.12, P = 0.45, N = 859) |
rs986294(A)/2:211671984* | intergenic | (0.24, 0.015, P = 1.7e-09, N = 7824) | (0.12, -0.13, P = 0.079, N = 859) |
rs4130275(T)/2:211730557* | intergenic | (0.83, 0.013, P = 8e-07, N = 7824) | (0.73, 0.011, P = 0.84, N = 859) |
rs13394054(A)/2:211742818* | intergenic | (0.39, -0.01, P = 1e-05, N = 7824) | (0.63, -0.064, P = 0.2, N = 859) |
rs4663379(A)/2:235209795 | intergenic | (0.89, 0.014, P = 7.8e-06, N = 7824) | (0.98, -0.12, P = 0.45, N = 859) |
rs1111967(T)/2:45443480 | LINC01121 | (0.77, 0.011, P = 1.6e-05, N = 7824) | (0.93, 0.18, P = 0.057, N = 859) |
rs11563112(T)/2:52038675* | AC007682.1 | (0.39, 0.0094, P = 3.7e-05, N = 7824) | (0.66, -0.099, P = 0.051, N = 859) |
rs1541543(T)/2:59799996 | RP11-444A22.1 | (0.62, 0.01, P = 1.9e-05, N = 7824) | (0.61, -0.089, P = 0.073, N = 859) |
rs13033420(T)/2:98758323 | VWA3B | (0.44, 0.0082, P = 1.9e-06, N = 7824) | (0.46, 0.033, P = 0.5, N = 859) |
rs390836(A)/20:15057002* | MACROD2 | (0.42, -0.0074, P = 2.1e-05, N = 7824) | (0.25, -0.03, P = 0.58, N = 859) |
rs6069057(C)/20:36806809* | intergenic | (0.87, 0.013, P = 4.3e-05, N = 7824) | (0.91, -0.087, P = 0.31, N = 859) |
rs4925188(A)/20:60195570* | CDH4 | (0.74, -0.0099, P = 2.2e-05, N = 7824) | (0.24, 0.033, P = 0.55, N = 859) |
rs1001972(C)/21:42147762* | DSCAM | (0.82, 0.011, P = 8.4e-06, N = 7824) | (0.88, -0.017, P = 0.82, N = 859) |
rs9981086(T)/21:45446328* | TRAPPC10 | (0.061, -0.22, P = 6.3e-06, N = 1957) | (0.24, 0.17, P = 0.0031, N = 859) |
rs17760136(A)/22:22380667* | PRAMENP | (0.18, -0.022, P = 1.5e-05, N = 7824) | (0.022, -0.33, P = 0.048, N = 859) |
rs5751770(T)/22:24252842* | AP000350.5 | (0.37, 0.014, P = 4.9e-05, N = 7824) | (0.46, -0.04, P = 0.41, N = 859) |
rs131460(A)/22:24931490* | GUCD1 | (0.17, -0.02, P = 1.8e-05, N = 7824) | (0.51, -0.0086, P = 0.86, N = 859) |
rs3184121(A)/3:124686733 | HEG1 | (0.21, -0.01, P = 2e-05, N = 7824) | (0.2, -0.068, P = 0.26, N = 859) |
rs9874508(A)/3:125902417* | ALDH1L1 | (0.46, -0.0084, P = 1.4e-06, N = 7824) | (0.67, 0.048, P = 0.34, N = 859) |
rs67138915(C)/3:13907483 | WNT7A | (0.17, -0.2, P = 1e-05, N = 1957) | (0.24, 0.022, P = 0.7, N = 859) |
rs11718229(A)/3:148487600* | intergenic | (0.15, 0.013, P = 2.1e-05, N = 7824) | (0.13, 0.16, P = 0.028, N = 859) |
rs701120(C)/3:154102004* | GPR149 | (0.85, 0.01, P = 4.2e-05, N = 7824) | (0.81, -0.086, P = 0.16, N = 859) |
rs9882567(T)/3:188988930 | TPRG1 | (0.05, -0.02, P = 1.1e-05, N = 7824) | (0.16, 0.032, P = 0.62, N = 859) |
rs941348(T)/3:22113690* | ZNF385D | (0.2, -0.011, P = 7.1e-06, N = 7824) | (0.19, -0.086, P = 0.16, N = 859) |
rs12715076(A)/3:26002178* | intergenic | (0.78, -0.01, P = 1.6e-05, N = 7824) | (0.85, 0.029, P = 0.67, N = 859) |
rs1388509(C)/3:68354402 | FAM19A1 | (0.075, -0.24, P = 5.7e-07, N = 1957) | (0.024, -0.045, P = 0.78, N = 859) |
rs11942744(T)/4:12360579* | intergenic | (0.98, 0.055, P = 4.5e-05, N = 7824) | (0.83, -0.051, P = 0.42, N = 859) |
rs2320467(A)/4:18179501 | intergenic | (0.26, 0.01, P = 1.2e-05, N = 7824) | (0.08, -0.0073, P = 0.93, N = 859) |
rs4241779(A)/4:184600601* | TRAPPC11 | (0.58, 0.0082, P = 2.8e-06, N = 7824) | (0.37, 0.035, P = 0.49, N = 859) |
rs16844542(A)/4:3524909 | LRPAP1 | (0.97, -0.03, P = 2.4e-05, N = 7824) | (0.96, -0.012, P = 0.92, N = 859) |
rs4865070(A)/4:57093826 | KIAA1211 | (0.11, -0.21, P = 8.5e-06, N = 1957) | (0.24, -0.053, P = 0.35, N = 859) |
rs36790(T)/5:109331459 | intergenic | (0.74, -0.25, P = 1.5e-06, N = 1957) | (0.44, 0.036, P = 0.45, N = 859) |
rs197442(A)/5:116861349 | LINC00992 | (0.6, 0.01, P = 7.6e-06, N = 7824) | (0.19, -0.093, P = 0.13, N = 859) |
rs403636(A)/5:1438354* | SLC6A3 | (0.15, -0.012, P = 5.9e-06, N = 7824) | (0.28, -0.064, P = 0.23, N = 859) |
rs10040689(A)/5:149097211 | RN7SL868P | (0.53, 0.0082, P = 1.8e-06, N = 7824) | (0.65, -0.02, P = 0.69, N = 859) |
rs342563(A)/5:16187424 | RP11-19O2.2 | (0.47, -0.01, P = 7.9e-06, N = 7824) | (0.56, -0.0027, P = 0.96, N = 859) |
rs17658389(T)/5:172205155* | RP11-779O18.3 | (0.36, -0.015, P = 3.3e-05, N = 7824) | (0.18, -2.8e-05, P = 1, N = 859) |
rs11953664(T)/5:23696111 | intergenic | (0.41, -0.007, P = 4.7e-05, N = 7824) | (0.44, -0.0018, P = 0.97, N = 859) |
rs710998(T)/5:3591916* | IRX1 | (0.92, 0.014, P = 5e-05, N = 7824) | (0.75, 0.033, P = 0.55, N = 859) |
rs1645273(T)/5:53383314 | ARL15 | (0.78, -0.01, P = 2.1e-05, N = 7824) | (0.55, 0.089, P = 0.071, N = 859) |
rs35107028(A)/5:93051362 | FAM172A | (0.1, -0.17, P = 5.4e-07, N = 1957) | (0.024, 0.14, P = 0.38, N = 859) |
rs9373846(A)/6:106778384 | ATG5 | (0.81, 0.011, P = 8.9e-06, N = 7824) | (0.88, 0.15, P = 0.051, N = 859) |
rs6933154(T)/6:129141684 | intergenic | (0.58, 0.0096, P = 2.4e-05, N = 7824) | (0.48, 0.1, P = 0.036, N = 859) |
rs12663563(C)/6:25339003 | LRRC16A | (0.047, -0.021, P = 8.2e-06, N = 7824) | (0.099, 0.039, P = 0.63, N = 859) |
rs2269713(A)/6:31141127* | POU5F1 | (0.98, 0.032, P = 1.1e-06, N = 7824) | (0.82, -0.013, P = 0.84, N = 859) |
rs2762343(A)/6:35066091* | intergenic | (0.51, 0.0083, P = 1.2e-06, N = 7824) | (0.78, -0.039, P = 0.5, N = 859) |
rs74394751(A)/6:76964078 | intergenic | (0.079, -0.97, P = 8.4e-06, N = 1957) | (0.015, 0.29, P = 0.15, N = 859) |
rs9450325(T)/6:86475814* | intergenic | (0.56, 0.007, P = 4.8e-05, N = 7824) | (0.53, -0.044, P = 0.37, N = 859) |
rs17154498(A)/7:107468125 | intergenic | (0.2, -0.011, P = 6.3e-06, N = 7824) | (0.12, 0.1, P = 0.18, N = 859) |
rs2189725(A)/7:15041873* | intergenic | (0.46, 0.0073, P = 4e-05, N = 7824) | (0.42, -0.12, P = 0.011, N = 859) |
rs4726207(T)/7:152496656 | ACTR3B | (0.63, 0.01, P = 1.5e-05, N = 7824) | (0.34, 0.015, P = 0.77, N = 859) |
rs6946890(T)/7:154384796* | DPP6 | (0.53, -0.0075, P = 1.6e-05, N = 7824) | (0.71, -0.057, P = 0.28, N = 859) |
rs4338001(A)/7:33701080 | intergenic | (0.042, 0.023, P = 4.9e-05, N = 7824) | (0.051, -0.04, P = 0.72, N = 859) |
rs4947534(T)/7:56079094* | PSPH | (0.25, -0.018, P = 2e-14, N = 7824) | (0.37, -0.046, P = 0.35, N = 859) |
rs4717437(A)/7:67633440* | RP5-945F2.3 | (0.31, -0.01, P = 3.8e-05, N = 7824) | (0.52, -0.036, P = 0.45, N = 859) |
rs7779884(A)/7:76949393* | GSAP | (0.51, 0.0072, P = 3.5e-05, N = 7824) | (0.78, 0.034, P = 0.56, N = 859) |
rs38971(A)/7:88956699* | ZNF804B | (0.83, 0.011, P = 1.9e-05, N = 7824) | (0.81, 0.013, P = 0.83, N = 859) |
rs11982782(A)/7:94063700* | COL1A2 | (0.082, -0.017, P = 7.9e-06, N = 7824) | (0.5, -0.03, P = 0.53, N = 859) |
rs17166293(A)/7:94081432 | intergenic | (0.081, -0.017, P = 1.3e-05, N = 7824) | (0.013, -0.19, P = 0.38, N = 859) |
rs12334472(G)/8:55452455 | intergenic | (0.52, 0.38, P = 5.4e-06, N = 1957) | (0.35, -0.019, P = 0.7, N = 859) |
rs2979710(A)/8:80652442 | intergenic | (0.88, -0.013, P = 3.4e-05, N = 7824) | (0.8, 0.087, P = 0.13, N = 859) |
rs10978424(A)/9:108877072 | intergenic | (0.047, 0.02, P = 2.9e-05, N = 7824) | (0.03, -0.016, P = 0.91, N = 859) |
rs315711(A)/9:114548451 | C9orf84 | (0.54, 0.0073, P = 2.7e-05, N = 7824) | (0.49, 0.024, P = 0.61, N = 859) |
rs7022371(T)/9:114601074* | RNU6-1013P | (0.5, 0.0086, P = 6.5e-07, N = 7824) | (0.71, -0.0059, P = 0.91, N = 859) |
rs28465292(T)/9:115708237 | intergenic | (0.21, -0.27, P = 9e-06, N = 1957) | (0.31, -0.045, P = 0.39, N = 859) |
rs10283912(T)/9:12285170 | RP11-71E22.1 | (0.51, -0.0076, P = 1.3e-05, N = 7824) | (0.76, 0.11, P = 0.056, N = 859) |
rs10812054(A)/9:24495241* | intergenic | (0.51, -0.0083, P = 2.6e-06, N = 7824) | (0.68, -0.021, P = 0.68, N = 859) |
rs10972101(T)/9:34417750* | FAM219A | (0.11, -0.014, P = 6.9e-06, N = 7824) | (0.013, 0.44, P = 0.03, N = 859) |
rs572099418(GTT)/9:34608298 | RPP25L | (0.042, -0.19, P = 3.7e-06, N = 1957) | (0.038, -0.14, P = 0.26, N = 859) |
rs144362640(A)/9:71839441 | TJP2 | (0.091, 0.25, P = 8.7e-06, N = 1957) | (0.04, 0.22, P = 0.073, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 121 | -0.053 (-0.15- 0.046) P=0.29 | 10 | 55 | 0.00115 (0- 96.1) | NA | NA | 0.0065 P=0.31 |
MR-Egger | 121 | -0.074 (-0.18- 0.033) P=0.18 | 10 | 55 | 0.00115 (0- 96.1) | 138 | 0.11 | 0.0065 P=0.31 |
Weighted median | 121 | -0.055 (-0.19- 0.078) P=0.42 | 10 | 55 | 0.00115 (0- 96.1) | NA | NA | 0.0065 P=0.31 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.05 | 0.05 | -1.05 | 0.3 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 59 | -0.03 (-0.13- 0.066) P=0.54 | 20 | 54 | 0 (0- 96.7) | NA | NA | 0.0085 P=0.37 |
MR-Egger | 59 | -0.053 (-0.16- 0.056) P=0.34 | 20 | 54 | 0 (0- 96.7) | 59 | 0.4 | 0.0085 P=0.37 |
Weighted median | 59 | -0.054 (-0.18- 0.076) P=0.41 | 20 | 54 | 0 (0- 96.7) | NA | NA | 0.0085 P=0.37 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.03 | 0.05 | -0.61 | 0.54 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Sorbitol (Shin et al/Long et al) | eGFR (CSSCD) |
rs1343274(T)/1:112875033* | RP5-965F6.2 | (0.95, 0.088, P = 1.6e-05, N = 7824) | (0.79, -0.0031, P = 0.96, N = 859) |
rs12720497(T)/1:186830420* | PLA2G4A | (0.29, -0.056, P = 1.7e-05, N = 7824) | (0.11, -0.21, P = 0.0088, N = 859) |
rs6687118(A)/1:86551785 | COL24A1 | (0.96, -0.17, P = 2e-05, N = 7824) | (0.68, -0.041, P = 0.42, N = 859) |
rs6657899(T)/1:86703902* | intergenic | (0.032, 0.19, P = 8e-06, N = 7824) | (0.038, 0.1, P = 0.41, N = 859) |
rs6658767(T)/1:94529895* | ABCA4 | (0.042, 0.095, P = 2.8e-05, N = 7824) | (0.014, 0.14, P = 0.49, N = 859) |
rs4917405(T)/10:105638232 | OBFC1 | (0.044, 0.097, P = 6.3e-06, N = 7824) | (0.087, 0.15, P = 0.083, N = 859) |
rs12269274(A)/10:2724048* | intergenic | (0.11, -0.059, P = 4.3e-05, N = 7824) | (0.059, 0.062, P = 0.56, N = 859) |
rs656587(A)/11:128624028* | FLI1 | (0.3, -0.078, P = 2.9e-05, N = 7824) | (0.094, -0.11, P = 0.2, N = 859) |
rs1516988(T)/11:35479735 | PAMR1 | (0.46, -0.037, P = 4.7e-05, N = 7824) | (0.31, 0.041, P = 0.45, N = 859) |
rs7303378(A)/12:22258068 | ST8SIA1 | (0.88, 0.062, P = 1.1e-05, N = 7824) | (0.98, -0.17, P = 0.33, N = 859) |
rs2900501(T)/12:22387507* | ST8SIA1 | (0.5, -0.04, P = 1.9e-05, N = 7824) | (0.51, 0.049, P = 0.31, N = 859) |
rs488225(A)/12:3229827 | TSPAN9 | (0.39, -0.041, P = 4.9e-06, N = 7824) | (0.37, -0.041, P = 0.42, N = 859) |
rs1570553(A)/13:76281653* | RP11-29G8.3 | (0.97, -0.19, P = 2.2e-05, N = 7824) | (0.79, 0.076, P = 0.21, N = 859) |
rs1998053(A)/14:101320034* | MEG3 | (0.086, 0.072, P = 5.6e-06, N = 7824) | (0.011, -0.04, P = 0.86, N = 859) |
rs17488344(T)/14:32909977* | AKAP6 | (0.9, -0.065, P = 1.8e-05, N = 7824) | (0.96, 0.12, P = 0.33, N = 859) |
rs7178693(A)/15:51394298 | TNFAIP8L3 | (0.038, 0.096, P = 3.7e-05, N = 7824) | (0.037, -0.1, P = 0.42, N = 859) |
rs4489954(T)/15:68072075* | MAP2K5 | (0.3, -0.041, P = 2.3e-05, N = 7824) | (0.35, 0.038, P = 0.46, N = 859) |
rs1053730(A)/16:1560886 | IFT140 | (0.74, -0.073, P = 3.1e-05, N = 7824) | (0.42, -0.08, P = 0.1, N = 859) |
rs7184992(T)/16:27432010* | IL21R | (0.3, 0.081, P = 1.3e-06, N = 7824) | (0.4, -0.035, P = 0.47, N = 859) |
rs1862858(A)/16:55320317 | RP11-26L20.3 | (0.024, 0.12, P = 4.8e-05, N = 7824) | (0.15, 0.041, P = 0.54, N = 859) |
rs1020065(T)/16:55369954* | RP11-26L20.3 | (0.021, 0.14, P = 1.2e-05, N = 7824) | (0.11, 0.057, P = 0.45, N = 859) |
rs2926133(C)/16:64282835* | AC012322.1 | (0.41, -0.038, P = 1.5e-05, N = 7824) | (0.35, 0.047, P = 0.36, N = 859) |
rs16967757(T)/16:64636513* | RP11-467L24.1 | (0.3, 0.05, P = 1.4e-06, N = 7824) | (0.27, 0.025, P = 0.64, N = 859) |
rs12934440(A)/16:82458443* | intergenic | (0.17, -0.059, P = 1.2e-05, N = 7824) | (0.29, -0.066, P = 0.23, N = 859) |
rs7240261(T)/18:5428938* | EPB41L3 | (0.56, 0.057, P = 7.5e-06, N = 7824) | (0.57, -0.053, P = 0.27, N = 859) |
rs317914(T)/19:11476599* | DKFZP761J1410 | (0.01, 0.35, P = 1.2e-05, N = 7824) | (0.11, -0.052, P = 0.5, N = 859) |
rs6434811(T)/2:196866420* | DNAH7 | (0.93, -0.079, P = 3.5e-06, N = 7824) | (0.28, 0.067, P = 0.2, N = 859) |
rs4831124(T)/3:115945873 | LSAMP | (0.68, 0.041, P = 4.2e-05, N = 7824) | (0.48, 0.018, P = 0.72, N = 859) |
rs6786557(A)/3:16766989* | intergenic | (0.02, 0.14, P = 1.9e-05, N = 7824) | (0.2, -0.039, P = 0.5, N = 859) |
rs1384953(T)/3:176178846 | intergenic | (0.63, -0.039, P = 4.1e-05, N = 7824) | (0.48, 0.007, P = 0.88, N = 859) |
rs10017961(A)/4:141000337 | MAML3 | (0.27, 0.049, P = 5.6e-06, N = 7824) | (0.15, 0.038, P = 0.58, N = 859) |
rs2365522(A)/4:72776163 | intergenic | (0.71, 0.044, P = 6.7e-06, N = 7824) | (0.75, 0.056, P = 0.32, N = 859) |
rs4859463(T)/4:77760785* | intergenic | (0.15, -0.053, P = 4.5e-05, N = 7824) | (0.19, -0.065, P = 0.28, N = 859) |
rs2306337(A)/5:141044472* | ARAP3 | (0.85, -0.056, P = 1.3e-05, N = 7824) | (0.88, 0.0035, P = 0.96, N = 859) |
rs4867710(T)/5:172845597* | CTB-32H22.1 | (0.3, 0.04, P = 4.6e-05, N = 7824) | (0.1, -0.034, P = 0.67, N = 859) |
rs1532331(T)/5:43116830 | ZNF131 | (0.7, -0.044, P = 1.9e-05, N = 7824) | (0.69, 0.058, P = 0.26, N = 859) |
rs1864037(A)/5:65590269 | RP11-305P14.1 | (0.85, 0.056, P = 1e-05, N = 7824) | (0.89, 0.053, P = 0.5, N = 859) |
rs9344148(T)/6:82018723* | intergenic | (0.75, 0.043, P = 4.9e-05, N = 7824) | (0.95, -0.0069, P = 0.95, N = 859) |
rs11487092(A)/7:107693740* | LAMB4 | (0.012, 0.25, P = 2.9e-06, N = 7824) | (0.58, -0.0046, P = 0.92, N = 859) |
rs7809511(A)/7:4240975* | SDK1 | (0.68, -0.041, P = 2.8e-05, N = 7824) | (0.5, 0.014, P = 0.78, N = 859) |
rs898931(A)/7:46390643* | intergenic | (0.15, 0.087, P = 2.1e-05, N = 7824) | (0.36, -0.053, P = 0.28, N = 859) |
rs1529225(T)/7:9322476* | intergenic | (0.08, -0.11, P = 4.8e-05, N = 7824) | (0.22, -0.053, P = 0.37, N = 859) |
rs4404993(T)/9:19367826* | DENND4C | (0.18, 0.096, P = 3.2e-06, N = 7824) | (0.038, 0.01, P = 0.93, N = 859) |
rs10811658(A)/9:22128600* | intergenic | (0.26, -0.061, P = 6.2e-06, N = 7824) | (0.45, -0.025, P = 0.6, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 44 | 0.0037 (-0.16- 0.17) P=0.97 | 9.3 | 5.2 | 0 (0- 43.9) | NA | NA | 0.0046 P=0.77 |
MR-Egger | 44 | -0.032 (-0.33- 0.27) P=0.83 | 9.3 | 5.2 | 0 (0- 43.9) | 38 | 0.65 | 0.0046 P=0.77 |
Weighted median | 44 | -0.029 (-0.29- 0.23) P=0.83 | 9.3 | 5.2 | 0 (0- 43.9) | NA | NA | 0.0046 P=0.77 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0 | 0.09 | 0.04 | 0.97 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 14 | 0.35 (-2.3e-06- 0.7) P=0.05 | 7.6 | 1.4 | 0 (0- 64.2) | NA | NA | -0.0049 P=0.87 |
MR-Egger | 14 | 0.4 (-0.36- 1.2) P=0.32 | 7.6 | 1.4 | 0 (0- 64.2) | 9.8 | 0.63 | -0.0049 P=0.87 |
Weighted median | 14 | 0.29 (-0.28- 0.85) P=0.32 | 7.6 | 1.4 | 0 (0- 64.2) | NA | NA | -0.0049 P=0.87 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.35 | 0.18 | 1.96 | 0.07 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Sucrose (Shin et al/Long et al) | eGFR (CSSCD) |
rs72860869(G)/1:9404367* | SPSB1 | (0.073, 1.4, P = 5.1e-07, N = 1439) | (0.31, 0.018, P = 0.73, N = 859) |
rs72731803(A)/1:96314983* | intergenic | (0.15, 1.7, P = 7.5e-06, N = 1439) | (0.43, 0.03, P = 0.54, N = 859) |
rs845088(C)/10:125208693* | RP11-282I1.1 | (0.79, 0.6, P = 9e-06, N = 1439) | (0.97, 0.34, P = 0.018, N = 859) |
rs1893360(C)/11:74399526* | RN7SKP297 | (0.75, 0.72, P = 7.3e-06, N = 1439) | (0.94, -0.08, P = 0.44, N = 859) |
rs840225(T)/13:107566858* | intergenic | (0.41, 0.63, P = 8.6e-06, N = 1439) | (0.63, -0.099, P = 0.044, N = 859) |
rs2765151(A)/13:24497442* | intergenic | (0.6, 1.4, P = 6.9e-06, N = 1439) | (0.18, -0.12, P = 0.058, N = 859) |
rs7151852(A)/14:67945022* | TMEM229B | (0.026, 1.3, P = 2e-06, N = 1439) | (0.036, 0.19, P = 0.14, N = 859) |
rs472591(G)/18:40483622* | RIT2 | (0.76, 1.7, P = 6.4e-06, N = 1439) | (0.32, 0.056, P = 0.27, N = 859) |
rs60172187(T)/18:9734084* | RAB31 | (0.05, 1.7, P = 1.9e-06, N = 1439) | (0.15, 0.039, P = 0.56, N = 859) |
rs34700006(G)/2:175149309* | intergenic | (0.41, 1.7, P = 5.9e-06, N = 1439) | (0.23, 0.1, P = 0.085, N = 859) |
rs1413421(A)/20:56580881* | intergenic | (0.37, 1.7, P = 5.2e-06, N = 1439) | (0.36, -0.11, P = 0.04, N = 859) |
rs4693441(C)/4:83386179* | ENOPH1 | (0.45, 0.22, P = 4.3e-06, N = 1439) | (0.74, 0.064, P = 0.25, N = 859) |
rs17085250(A)/6:149610639* | RN7SL234P | (0.11, -0.19, P = 7.5e-06, N = 1439) | (0.14, 0.025, P = 0.71, N = 859) |
rs7767685(A)/6:20276539* | RP11-239H6.2 | (0.27, 1.7, P = 9.9e-06, N = 1439) | (0.12, -0.041, P = 0.58, N = 859) |
rs4721056(G)/7:12251262* | TMEM106B | (0.55, 1.7, P = 6.8e-06, N = 1439) | (0.71, -0.049, P = 0.36, N = 859) |
rs6945187(C)/7:12509538* | AC013470.6 | (0.49, 1.7, P = 9.9e-06, N = 1439) | (0.6, 0.059, P = 0.23, N = 859) |
rs1593306(A)/7:131613963* | AC009518.4 | (0.92, 0.74, P = 2.8e-06, N = 1439) | (0.59, 0.011, P = 0.82, N = 859) |
rs6944685(T)/7:85356747* | intergenic | (0.31, 0.59, P = 3.4e-06, N = 1439) | (0.34, -0.028, P = 0.59, N = 859) |
rs1457777(T)/8:133272817* | KCNQ3 | (0.52, 1.7, P = 9.6e-06, N = 1439) | (0.17, -0.02, P = 0.76, N = 859) |
rs4872085(C)/8:23075488* | TNFRSF10A | (0.43, 1.5, P = 9.9e-06, N = 1439) | (0.15, -0.026, P = 0.7, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 20 | -0.00022 (-0.024- 0.024) P=0.99 | -1531 | 1323 | 24.2 (0- 89.6) | NA | NA | -0.013 P=0.77 |
MR-Egger | 20 | 0.0086 (-0.054- 0.071) P=0.79 | -1531 | 1323 | 24.2 (0- 89.6) | 30 | 0.04 | -0.013 P=0.77 |
Weighted median | 20 | 0.014 (-0.014- 0.042) P=0.32 | -1531 | 1323 | 24.2 (0- 89.6) | NA | NA | -0.013 P=0.77 |
Results from Univariable MRPRESSO of Sucrose & eGFR - model1
Results from Univariable Mendelian Randomization of Sucrose & eGFR - model2
Results from Univariable MRPRESSO of Sucrose & eGFR - model2
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | L-Tryptophan (Shin et al/Long et al) | eGFR (CSSCD) |
rs2798184(T)/1:109096332 | intergenic | (0.43, -0.0049, P = 6.4e-08, N = 7824) | (0.25, 0.0016, P = 0.98, N = 859) |
rs2432(T)/1:114631980 | SYT6 | (0.47, 0.0046, P = 4.3e-07, N = 7824) | (0.19, -0.019, P = 0.75, N = 859) |
rs148210(T)/1:114749024 | RP4-543J13.1 | (0.47, -0.0036, P = 4.9e-05, N = 7824) | (0.44, -0.024, P = 0.62, N = 859) |
rs12021645(T)/1:146716517 | CHD1L | (0.064, -0.35, P = 5.7e-06, N = 1959) | (0.26, -0.012, P = 0.83, N = 859) |
rs6426929(A)/1:154750989 | KCNN3 | (0.46, 0.0039, P = 1.4e-05, N = 7824) | (0.52, -0.021, P = 0.65, N = 859) |
rs11582932(T)/1:160369372 | VANGL2 | (0.64, 0.0039, P = 1.7e-05, N = 7824) | (0.68, -0.055, P = 0.3, N = 859) |
rs2819322(T)/1:162281028* | NOS1AP | (0.46, -0.0038, P = 3.3e-05, N = 7824) | (0.44, -0.035, P = 0.48, N = 859) |
rs2071921(T)/1:167825485 | ADCY10 | (0.59, 0.0037, P = 4.8e-05, N = 7824) | (0.54, 0.011, P = 0.82, N = 859) |
rs6685230(T)/1:168368154 | RP5-968D22.1 | (0.4, -0.0042, P = 7.8e-06, N = 7824) | (0.083, 0.0072, P = 0.93, N = 859) |
rs2977272(T)/1:17536952* | PADI1 | (0.34, 0.005, P = 5.7e-07, N = 7824) | (0.079, -0.028, P = 0.75, N = 859) |
rs12564117(T)/1:179625501 | TDRD5 | (0.6, 0.004, P = 1.1e-05, N = 7824) | (0.66, -0.028, P = 0.57, N = 859) |
rs16823952(T)/1:185342562 | intergenic | (0.91, -0.0083, P = 5.1e-06, N = 7824) | (0.91, 0.019, P = 0.82, N = 859) |
rs1412972(T)/1:190245977 | BRINP3 | (0.5, 0.0097, P = 1.6e-06, N = 7824) | (0.76, 0.079, P = 0.15, N = 859) |
rs17336405(T)/1:204875330 | NFASC | (0.25, -0.16, P = 5.9e-06, N = 1959) | (0.1, -0.06, P = 0.46, N = 859) |
rs12754274(T)/1:206670827 | IKBKE | (0.48, -0.0038, P = 2.9e-05, N = 7824) | (0.37, 0.098, P = 0.05, N = 859) |
rs6667202(A)/1:206957092 | intergenic | (0.56, 0.0039, P = 2.3e-05, N = 7824) | (0.47, -0.03, P = 0.53, N = 859) |
rs7552506(C)/1:209969902 | IRF6 | (0.35, 0.0037, P = 4.7e-05, N = 7824) | (0.25, -0.044, P = 0.43, N = 859) |
rs3845524(T)/1:215886709 | USH2A | (0.39, 0.0038, P = 2.3e-05, N = 7824) | (0.42, -0.001, P = 0.98, N = 859) |
rs10495209(T)/1:223656537 | intergenic | (0.49, 0.004, P = 8e-06, N = 7824) | (0.38, -0.081, P = 0.11, N = 859) |
rs881979(C)/1:231435280 | intergenic | (0.099, 0.0074, P = 2.5e-05, N = 7824) | (0.017, -0.29, P = 0.12, N = 859) |
rs10927101(A)/1:244173872 | RP11-278H7.1 | (0.37, -0.0046, P = 2.7e-07, N = 7824) | (0.51, 0.017, P = 0.74, N = 859) |
rs1704427(T)/1:245566986 | KIF26B | (0.43, 0.0037, P = 3.9e-05, N = 7824) | (0.42, 0.11, P = 0.022, N = 859) |
rs10802308(T)/1:246152478* | SMYD3 | (0.9, 0.0072, P = 3e-05, N = 7824) | (0.63, -0.11, P = 0.034, N = 859) |
rs502654(T)/1:31061501 | intergenic | (0.56, -0.0046, P = 2.6e-07, N = 7824) | (0.19, -0.036, P = 0.54, N = 859) |
rs4073324(T)/1:3797995 | DFFB | (0.55, -0.004, P = 1.4e-05, N = 7824) | (0.47, 0.018, P = 0.71, N = 859) |
rs688627(T)/1:44048283* | PTPRF | (0.59, 0.0042, P = 3.6e-06, N = 7824) | (0.29, -0.089, P = 0.093, N = 859) |
rs9793263(A)/1:46722389* | RAD54L | (0.41, 0.0037, P = 4e-05, N = 7824) | (0.64, -0.013, P = 0.8, N = 859) |
rs4926571(T)/1:53096614* | FAM159A | (0.52, -0.0048, P = 9e-08, N = 7824) | (0.14, 0.016, P = 0.81, N = 859) |
rs699856(T)/1:75089136* | C1orf173 | (0.37, 0.004, P = 8e-06, N = 7824) | (0.17, 0.065, P = 0.31, N = 859) |
rs11804149(T)/1:77457748 | ST6GALNAC5 | (0.47, 0.0041, P = 4.6e-06, N = 7824) | (0.21, -0.014, P = 0.82, N = 859) |
rs7545284(A)/1:8192898 | intergenic | (0.43, -0.0038, P = 3.5e-05, N = 7824) | (0.19, 0.019, P = 0.76, N = 859) |
rs2209695(A)/1:82974427 | intergenic | (0.53, -0.0038, P = 2.2e-05, N = 7824) | (0.69, 0.052, P = 0.32, N = 859) |
rs11802417(T)/1:84276046 | RP11-475O6.1 | (0.58, -0.0041, P = 4.5e-06, N = 7824) | (0.71, 0.012, P = 0.82, N = 859) |
rs17130048(A)/1:88051115 | intergenic | (0.99, -0.039, P = 4.3e-05, N = 7824) | (0.82, 0.033, P = 0.61, N = 859) |
rs2813760(A)/1:90569361* | intergenic | (0.58, 0.0044, P = 1.2e-06, N = 7824) | (0.63, -0.0062, P = 0.9, N = 859) |
rs284191(A)/1:92236048 | TGFBR3 | (0.61, -0.006, P = 2e-09, N = 7824) | (0.44, -0.074, P = 0.13, N = 859) |
rs7909316(A)/10:108518774 | SORCS1 | (0.14, 0.007, P = 1.9e-05, N = 7824) | (0.3, -0.05, P = 0.34, N = 859) |
rs11195297(A)/10:112498838 | RBM20 | (0.43, 0.0039, P = 1.8e-05, N = 7824) | (0.46, 0.044, P = 0.39, N = 859) |
rs151598(A)/10:115697178 | intergenic | (0.42, -0.0039, P = 1.1e-05, N = 7824) | (0.28, 0.039, P = 0.47, N = 859) |
rs2769419(A)/10:117395006 | ATRNL1 | (0.48, 0.004, P = 6.2e-06, N = 7824) | (0.43, 0.043, P = 0.36, N = 859) |
rs4611118(A)/10:122395120 | intergenic | (0.61, -0.0044, P = 9.4e-07, N = 7824) | (0.48, 0.0037, P = 0.94, N = 859) |
rs4751282(T)/10:129164681 | DOCK1 | (0.54, 0.0045, P = 7.4e-07, N = 7824) | (0.58, -0.042, P = 0.39, N = 859) |
rs4880221(C)/10:134729792 | TTC40 | (0.29, 0.2, P = 9.1e-06, N = 1959) | (0.15, 0.058, P = 0.39, N = 859) |
rs1879606(T)/10:14272502 | FRMD4A | (0.38, 0.004, P = 1.7e-05, N = 7824) | (0.24, 0.041, P = 0.48, N = 859) |
rs2688858(T)/10:14764993 | FAM107B | (0.57, 0.0043, P = 2.8e-06, N = 7824) | (0.82, -0.011, P = 0.87, N = 859) |
rs7072433(T)/10:15231980 | intergenic | (0.43, 0.0039, P = 3.3e-05, N = 7824) | (0.39, -0.1, P = 0.043, N = 859) |
rs4880888(A)/10:1661627 | ADARB2 | (0.48, -0.0046, P = 3.2e-07, N = 7824) | (0.58, 0.083, P = 0.09, N = 859) |
rs17294277(T)/10:1919532 | intergenic | (0.95, -0.011, P = 1.8e-05, N = 7824) | (0.92, 0.013, P = 0.88, N = 859) |
rs1409344(A)/10:20290956 | PLXDC2 | (0.53, 0.0037, P = 4e-05, N = 7824) | (0.34, -0.022, P = 0.66, N = 859) |
rs11012548(T)/10:21446033 | NEBL | (0.12, -0.0071, P = 4.2e-05, N = 7824) | (0.081, 0.1, P = 0.25, N = 859) |
rs2250411(T)/10:24833137 | KIAA1217 | (0.4, -0.004, P = 1.2e-05, N = 7824) | (0.28, 0.083, P = 0.12, N = 859) |
rs2367059(A)/10:24864127 | intergenic | (0.47, -0.0046, P = 4e-07, N = 7824) | (0.45, -0.079, P = 0.11, N = 859) |
rs2484178(T)/10:27691799 | PTCHD3 | (0.61, 0.0043, P = 1.7e-06, N = 7824) | (0.56, 0.0022, P = 0.96, N = 859) |
rs2388594(A)/10:3137445* | PFKP | (0.38, -0.0037, P = 3.5e-05, N = 7824) | (0.43, 0.042, P = 0.41, N = 859) |
rs1332772(A)/10:36891028 | intergenic | (0.39, 0.0037, P = 4.3e-05, N = 7824) | (0.29, -0.028, P = 0.62, N = 859) |
rs2505644(T)/10:44175098* | ZNF32-AS3 | (0.56, 0.005, P = 5.7e-07, N = 7824) | (0.58, -0.056, P = 0.25, N = 859) |
rs6480970(A)/10:54568664 | intergenic | (0.62, -0.0049, P = 4.3e-08, N = 7824) | (0.45, -0.072, P = 0.14, N = 859) |
rs11593406(T)/10:58772842* | intergenic | (0.55, 0.0037, P = 3.6e-05, N = 7824) | (0.14, -0.068, P = 0.31, N = 859) |
rs10822056(T)/10:64514111* | intergenic | (0.51, 0.0042, P = 2.7e-06, N = 7824) | (0.6, -0.077, P = 0.11, N = 859) |
rs938040(T)/10:65738183 | RP11-170M17.1 | (0.11, 0.0074, P = 9.1e-06, N = 7824) | (0.4, 0.033, P = 0.5, N = 859) |
rs10822442(A)/10:66844316 | intergenic | (0.5, 0.0037, P = 3.5e-05, N = 7824) | (0.47, -0.036, P = 0.45, N = 859) |
rs11201034(A)/10:81745367 | RP11-479O17.7 | (0.61, 0.0043, P = 1.9e-06, N = 7824) | (0.54, -0.048, P = 0.31, N = 859) |
rs2488631(A)/10:86349294 | intergenic | (0.37, 0.0038, P = 2.6e-05, N = 7824) | (0.26, -0.015, P = 0.79, N = 859) |
rs11256264(C)/10:9621246 | intergenic | (0.55, 0.0038, P = 1.9e-05, N = 7824) | (0.83, 0.077, P = 0.23, N = 859) |
rs1145411(T)/11:100246959 | intergenic | (0.56, -0.0037, P = 3.3e-05, N = 7824) | (0.2, -0.046, P = 0.44, N = 859) |
rs7120953(T)/11:101452193 | TRPC6 | (0.46, 0.0038, P = 2.5e-05, N = 7824) | (0.3, 0.033, P = 0.53, N = 859) |
rs6591150(A)/11:105941758 | KBTBD3 | (0.1, -0.0076, P = 1.1e-05, N = 7824) | (0.27, -0.053, P = 0.32, N = 859) |
rs17393784(T)/11:105982171 | RP11-677I18.4 | (0.89, 0.0073, P = 1.5e-05, N = 7824) | (0.96, -0.15, P = 0.23, N = 859) |
rs2510595(A)/11:106863491 | GUCY1A2 | (0.61, -0.0045, P = 5e-07, N = 7824) | (0.79, -0.027, P = 0.66, N = 859) |
rs2091289(A)/11:112187392 | RP11-356J5.12 | (0.59, 0.0043, P = 1.5e-06, N = 7824) | (0.91, 0.0029, P = 0.97, N = 859) |
rs603446(T)/11:116654435* | ZNF259 | (0.44, 0.0051, P = 1.4e-08, N = 7824) | (0.18, -0.11, P = 0.067, N = 859) |
rs7127212(T)/11:118953202* | HMBS | (0.4, 0.0038, P = 2.9e-05, N = 7824) | (0.65, 0.055, P = 0.27, N = 859) |
rs1946084(A)/11:126626203* | KIRREL3 | (0.39, -0.0037, P = 4.3e-05, N = 7824) | (0.53, 0.057, P = 0.24, N = 859) |
rs2970335(A)/11:14325401* | RRAS2 | (0.4, 0.0044, P = 1e-06, N = 7824) | (0.4, 0.0082, P = 0.86, N = 859) |
rs7109477(A)/11:21413780* | NELL1 | (0.46, -0.0047, P = 1.9e-07, N = 7824) | (0.81, 0.013, P = 0.83, N = 859) |
rs179785(A)/11:2781519 | KCNQ1 | (0.47, 0.0038, P = 2e-05, N = 7824) | (0.66, 0.074, P = 0.16, N = 859) |
rs10836364(T)/11:35306345* | SLC1A2 | (0.61, 0.005, P = 5.7e-07, N = 7824) | (0.88, -0.041, P = 0.59, N = 859) |
rs4755291(A)/11:44821921 | TSPAN18 | (0.46, -0.0041, P = 5.3e-06, N = 7824) | (0.58, -0.077, P = 0.11, N = 859) |
rs7934096(T)/11:5748396 | OR52P1P | (0.54, -0.0037, P = 4.1e-05, N = 7824) | (0.64, 0.067, P = 0.19, N = 859) |
rs2178260(T)/11:62069365 | SCGB1D4 | (0.43, 0.0042, P = 3.6e-06, N = 7824) | (0.17, 0.0093, P = 0.88, N = 859) |
rs590336(T)/11:73708521 | UCP3 | (0.51, -0.004, P = 6.5e-06, N = 7824) | (0.68, 0.049, P = 0.34, N = 859) |
rs1790398(T)/11:73801265 | C2CD3 | (0.52, 0.0048, P = 5.8e-08, N = 7824) | (0.12, 0.069, P = 0.36, N = 859) |
rs575257(A)/11:78869070 | TENM4 | (0.6, -0.0042, P = 3.5e-06, N = 7824) | (0.37, -0.04, P = 0.42, N = 859) |
rs7946613(A)/11:83789540 | DLG2 | (0.89, -0.0072, P = 2.1e-05, N = 7824) | (0.9, 0.0014, P = 0.99, N = 859) |
rs1871053(A)/11:88476191* | GRM5 | (0.45, -0.0044, P = 7.7e-07, N = 7824) | (0.82, 0.074, P = 0.23, N = 859) |
rs1349704(A)/11:96777666* | intergenic | (0.46, 0.0044, P = 8.3e-07, N = 7824) | (0.58, -0.022, P = 0.65, N = 859) |
rs12278762(T)/11:98781993 | intergenic | (0.52, 0.0043, P = 1.6e-06, N = 7824) | (0.49, -0.073, P = 0.13, N = 859) |
rs10750415(T)/11:99750593* | CNTN5 | (0.4, 0.0042, P = 2.8e-06, N = 7824) | (0.4, 0.0026, P = 0.96, N = 859) |
rs1861809(A)/12:110245588 | TRPV4 | (0.49, -0.0039, P = 1.3e-05, N = 7824) | (0.23, 0.024, P = 0.68, N = 859) |
rs10845331(C)/12:11474657 | intergenic | (0.59, -0.0038, P = 2.1e-05, N = 7824) | (0.92, 0.051, P = 0.54, N = 859) |
rs10846667(T)/12:124884424 | NCOR2 | (0.49, 0.0045, P = 1.7e-06, N = 7824) | (0.11, 0.087, P = 0.25, N = 859) |
rs3751181(A)/12:125626535* | AACS | (0.61, 0.0041, P = 5.2e-06, N = 7824) | (0.51, 0.07, P = 0.13, N = 859) |
rs871818(A)/12:130700729 | RP11-143E21.1 | (0.65, -0.0038, P = 3.5e-05, N = 7824) | (0.75, 0.031, P = 0.59, N = 859) |
rs4418881(A)/12:133058066 | intergenic | (0.65, 0.004, P = 2.5e-05, N = 7824) | (0.43, -0.039, P = 0.44, N = 859) |
rs725124(T)/12:23853069* | SOX5 | (0.64, -0.0038, P = 2.7e-05, N = 7824) | (0.44, -0.034, P = 0.48, N = 859) |
rs7965657(A)/12:27786415 | PPFIBP1 | (0.63, 0.0037, P = 4.8e-05, N = 7824) | (0.76, -0.038, P = 0.52, N = 859) |
rs11062520(T)/12:3241104 | TSPAN9 | (0.15, -0.0067, P = 3.8e-05, N = 7824) | (0.079, 0.016, P = 0.86, N = 859) |
rs7137875(A)/12:3697839* | PRMT8 | (0.62, 0.0038, P = 2.4e-05, N = 7824) | (0.62, -0.014, P = 0.78, N = 859) |
rs10881004(T)/12:47236571* | intergenic | (0.48, 0.0041, P = 3.4e-06, N = 7824) | (0.89, -0.031, P = 0.69, N = 859) |
rs17739600(T)/12:53210145 | KRT4 | (0.48, 0.0038, P = 2.6e-05, N = 7824) | (0.24, -0.065, P = 0.23, N = 859) |
rs12818321(T)/12:62120103* | FAM19A2 | (0.099, -0.0075, P = 1.4e-05, N = 7824) | (0.038, -0.2, P = 0.1, N = 859) |
rs10784496(A)/12:66160971 | RPSAP52 | (0.54, 0.0045, P = 5.1e-07, N = 7824) | (0.23, -0.028, P = 0.63, N = 859) |
rs17114354(A)/12:75291946* | intergenic | (0.99, 0.025, P = 3.5e-06, N = 7824) | (0.88, -0.074, P = 0.31, N = 859) |
rs9517869(T)/13:100398242 | CLYBL | (0.37, -0.0046, P = 3.5e-07, N = 7824) | (0.15, 0.078, P = 0.26, N = 859) |
rs1015795(A)/13:103225700 | intergenic | (0.51, 0.0043, P = 2.3e-06, N = 7824) | (0.18, 0.11, P = 0.09, N = 859) |
rs2391128(T)/13:105219349 | intergenic | (0.48, -0.0045, P = 4.7e-07, N = 7824) | (0.14, -0.021, P = 0.76, N = 859) |
rs2181766(A)/13:109057109 | intergenic | (0.35, 0.0037, P = 4e-05, N = 7824) | (0.36, 0.077, P = 0.12, N = 859) |
rs9511152(A)/13:19596767 | PHF2P2 | (0.56, -0.005, P = 3e-08, N = 7824) | (0.71, -0.087, P = 0.11, N = 859) |
rs8000457(T)/13:22871975* | intergenic | (0.97, 0.03, P = 4.7e-05, N = 7824) | (0.85, -0.023, P = 0.73, N = 859) |
rs1330918(A)/13:23373129 | RPL7AP73 | (0.61, 0.0042, P = 2.2e-06, N = 7824) | (0.76, -0.012, P = 0.83, N = 859) |
rs736081(T)/13:24659726 | SPATA13 | (0.45, 0.0039, P = 1.7e-05, N = 7824) | (0.66, -0.062, P = 0.23, N = 859) |
rs1220605(A)/13:24789809 | SPATA13 | (0.63, -0.0046, P = 9.3e-07, N = 7824) | (0.68, 0.016, P = 0.76, N = 859) |
rs9579653(T)/13:31344712 | intergenic | (0.84, 0.0064, P = 3.9e-05, N = 7824) | (0.85, -0.028, P = 0.67, N = 859) |
rs9541214(T)/13:35112824* | RP11-16D22.2 | (0.65, -0.0042, P = 3.8e-06, N = 7824) | (0.83, 0.049, P = 0.44, N = 859) |
rs9315440(A)/13:37293989 | intergenic | (0.58, 0.0048, P = 6.7e-08, N = 7824) | (0.51, -0.016, P = 0.73, N = 859) |
rs7318017(T)/13:52410120 | intergenic | (0.73, -0.0065, P = 1.3e-05, N = 7824) | (0.46, 0.0046, P = 0.92, N = 859) |
rs9543391(T)/13:74115140 | LINC00393 | (0.4, 0.0041, P = 6.4e-06, N = 7824) | (0.17, 0.035, P = 0.59, N = 859) |
rs1948293(A)/13:82401892 | intergenic | (0.4, -0.0039, P = 1.2e-05, N = 7824) | (0.41, 0.027, P = 0.59, N = 859) |
rs982568(T)/13:83438876 | intergenic | (0.43, 0.0037, P = 3.1e-05, N = 7824) | (0.37, 0.0052, P = 0.92, N = 859) |
rs9556349(A)/13:87690351 | intergenic | (0.095, 0.0075, P = 1.3e-05, N = 7824) | (0.029, 0.12, P = 0.39, N = 859) |
rs1335494(A)/13:89060622* | intergenic | (0.62, -0.0038, P = 2.9e-05, N = 7824) | (0.37, -0.013, P = 0.8, N = 859) |
rs9523030(T)/13:91262300 | intergenic | (0.63, 0.0043, P = 5.6e-06, N = 7824) | (0.41, 0.0097, P = 0.84, N = 859) |
rs885883(T)/14:107274052 | IGHVII-78-1 | (0.6, -0.0039, P = 1.3e-05, N = 7824) | (0.93, 0.0045, P = 0.96, N = 859) |
rs12891553(T)/14:20692188 | OR11H6 | (0.52, -0.0043, P = 2.4e-06, N = 7824) | (0.48, -0.013, P = 0.78, N = 859) |
rs718433(A)/14:22235890 | TRAV6 | (0.61, -0.0039, P = 1.5e-05, N = 7824) | (0.66, 0.038, P = 0.45, N = 859) |
rs8021242(T)/14:22398968* | intergenic | (0.59, 0.0049, P = 5.2e-08, N = 7824) | (0.79, -0.038, P = 0.51, N = 859) |
rs1241503(A)/14:25612502 | intergenic | (0.43, 0.0039, P = 1.7e-05, N = 7824) | (0.62, -0.044, P = 0.35, N = 859) |
rs3742929(T)/14:33165182 | AKAP6 | (0.51, -0.0044, P = 1e-06, N = 7824) | (0.8, 0.043, P = 0.47, N = 859) |
rs10483460(T)/14:36525290* | RP11-116N8.1 | (0.96, 0.014, P = 1.5e-05, N = 7824) | (0.8, -0.028, P = 0.64, N = 859) |
rs428185(T)/14:48321936 | intergenic | (0.59, -0.0045, P = 6.3e-07, N = 7824) | (0.32, -0.0099, P = 0.85, N = 859) |
rs4479142(T)/14:51530897 | TRIM9 | (0.6, -0.0037, P = 4.8e-05, N = 7824) | (0.67, -0.053, P = 0.29, N = 859) |
rs1254598(A)/14:52781195 | PTGER2 | (0.8, 0.15, P = 3.8e-06, N = 1959) | (0.39, -0.022, P = 0.66, N = 859) |
rs1254336(T)/14:60918777 | C14orf39 | (0.065, -0.29, P = 6.6e-06, N = 1959) | (0.28, -0.023, P = 0.66, N = 859) |
rs8006663(A)/14:69171003* | RAD51B | (0.46, -0.0046, P = 3e-07, N = 7824) | (0.36, 0.12, P = 0.016, N = 859) |
rs4899797(T)/14:82360895* | RP11-666E17.1 | (0.56, -0.0037, P = 3.1e-05, N = 7824) | (0.26, -0.02, P = 0.71, N = 859) |
rs12893435(A)/14:83311362* | intergenic | (0.38, 0.0038, P = 2.7e-05, N = 7824) | (0.56, 0.025, P = 0.6, N = 859) |
rs10151458(A)/14:89876847 | FOXN3 | (0.13, 0.007, P = 3.3e-05, N = 7824) | (0.45, 0.031, P = 0.53, N = 859) |
rs2230532(T)/14:97321689* | VRK1 | (0.35, 0.005, P = 5.7e-07, N = 7824) | (0.18, -0.0087, P = 0.89, N = 859) |
rs17744500(T)/15:101599246* | LRRK1 | (0.46, -0.0041, P = 4.2e-06, N = 7824) | (0.52, 0.14, P = 0.0069, N = 859) |
rs2444964(A)/15:33433259 | FMN1 | (0.41, -0.0038, P = 1.9e-05, N = 7824) | (0.29, 0.0053, P = 0.92, N = 859) |
rs837127(T)/15:37244186 | MEIS2 | (0.43, -0.0038, P = 2.3e-05, N = 7824) | (0.56, 0.1, P = 0.039, N = 859) |
rs692155(A)/15:41407061* | INO80 | (0.51, 0.0038, P = 2.6e-05, N = 7824) | (0.21, 0.027, P = 0.65, N = 859) |
rs645953(A)/15:42394368 | intergenic | (0.45, 0.0038, P = 2.6e-05, N = 7824) | (0.36, 0.037, P = 0.47, N = 859) |
rs682359(T)/15:42426833* | intergenic | (0.58, 0.0044, P = 6.5e-07, N = 7824) | (0.86, 0.066, P = 0.34, N = 859) |
rs8043246(C)/15:55330699* | intergenic | (0.16, -0.0071, P = 1.6e-05, N = 7824) | (0.13, 0.16, P = 0.025, N = 859) |
rs12595508(T)/15:61870977 | RP11-507B12.2 | (0.45, 0.0038, P = 1.8e-05, N = 7824) | (0.86, 0.029, P = 0.69, N = 859) |
rs6494862(A)/15:70671669 | intergenic | (0.53, 0.0039, P = 1.5e-05, N = 7824) | (0.61, 0.048, P = 0.33, N = 859) |
rs10519267(A)/15:79924714 | intergenic | (0.029, 0.014, P = 2.5e-05, N = 7824) | (0.021, 0.21, P = 0.21, N = 859) |
rs1347648(A)/15:80558947 | LINC00927 | (0.44, -0.0037, P = 2.9e-05, N = 7824) | (0.25, 0.11, P = 0.044, N = 859) |
rs4843144(A)/15:83584065 | HOMER2 | (0.47, -0.0037, P = 4.8e-05, N = 7824) | (0.83, 0.058, P = 0.36, N = 859) |
rs1455775(T)/15:93015278* | C15orf32 | (0.44, -0.0039, P = 1.2e-05, N = 7824) | (0.37, 0.0075, P = 0.88, N = 859) |
rs830727(A)/16:12309785* | SNX29 | (0.43, -0.0038, P = 2.6e-05, N = 7824) | (0.84, -0.076, P = 0.25, N = 859) |
rs928963(A)/16:13616231 | U91319.1 | (0.4, 0.0042, P = 3.6e-06, N = 7824) | (0.38, 0.15, P = 0.0027, N = 859) |
rs7206838(A)/16:17356812* | XYLT1 | (0.57, 0.0037, P = 4e-05, N = 7824) | (0.93, -0.1, P = 0.29, N = 859) |
rs7189972(A)/16:19490008 | TMC5 | (0.043, -0.011, P = 3e-05, N = 7824) | (0.18, -0.098, P = 0.12, N = 859) |
rs2520117(A)/16:26576299* | intergenic | (0.45, 0.0045, P = 5.1e-07, N = 7824) | (0.55, 0.016, P = 0.74, N = 859) |
rs10521275(T)/16:52907039 | intergenic | (0.47, -0.0042, P = 3.6e-06, N = 7824) | (0.49, 0.041, P = 0.39, N = 859) |
rs8056052(C)/16:52912738 | intergenic | (0.6, 0.0042, P = 3.3e-06, N = 7824) | (0.57, -0.04, P = 0.42, N = 859) |
rs2111118(T)/16:54049153 | FTO | (0.62, 0.0051, P = 1.2e-08, N = 7824) | (0.19, 0.064, P = 0.29, N = 859) |
rs8046426(A)/16:7232302 | RBFOX1 | (0.37, 0.004, P = 8.1e-06, N = 7824) | (0.32, -0.018, P = 0.72, N = 859) |
rs12919838(C)/16:7533330 | RBFOX1 | (0.51, 0.0039, P = 1.5e-05, N = 7824) | (0.89, -0.095, P = 0.23, N = 859) |
rs62059845(G)/16:75430713 | CFDP1 | (0.34, 0.08, P = 9.4e-06, N = 1959) | (0.35, -0.013, P = 0.79, N = 859) |
rs6500981(T)/16:7593575* | RBFOX1 | (0.9, -0.25, P = 3.5e-06, N = 1959) | (0.81, 0.032, P = 0.61, N = 859) |
rs881562(T)/16:7760884 | RBFOX1 | (0.5, 0.0044, P = 1.5e-06, N = 7824) | (0.74, 0.039, P = 0.5, N = 859) |
rs2966079(T)/16:81511806 | CMIP | (0.54, -0.0042, P = 2.5e-06, N = 7824) | (0.67, -0.042, P = 0.41, N = 859) |
rs4783276(T)/16:82826944* | CDH13 | (0.51, 0.0037, P = 4.6e-05, N = 7824) | (0.29, 0.019, P = 0.73, N = 859) |
rs4783024(T)/16:84624525 | COTL1 | (0.49, -0.004, P = 2.8e-05, N = 7824) | (0.59, -0.026, P = 0.6, N = 859) |
rs7198470(T)/16:87061782 | intergenic | (0.61, 0.004, P = 9e-06, N = 7824) | (0.68, 0.046, P = 0.37, N = 859) |
rs17698249(A)/16:87319938 | RP11-178L8.5 | (0.57, -0.0041, P = 5.5e-06, N = 7824) | (0.91, -0.071, P = 0.38, N = 859) |
rs205021(T)/17:11320392 | SHISA6 | (0.89, 0.0074, P = 1.5e-05, N = 7824) | (0.73, -0.047, P = 0.39, N = 859) |
rs11078180(A)/17:13622654* | intergenic | (0.52, -0.0037, P = 4.7e-05, N = 7824) | (0.4, 0.0079, P = 0.87, N = 859) |
rs2078340(T)/17:13807276 | COX10-AS1 | (0.53, 0.0039, P = 2.7e-05, N = 7824) | (0.5, -0.029, P = 0.56, N = 859) |
rs7217154(T)/17:14168109* | intergenic | (0.44, -0.0037, P = 4.1e-05, N = 7824) | (0.67, 0.033, P = 0.52, N = 859) |
rs2386434(G)/17:20470679 | COTL1P2 | (0.43, 0.18, P = 4.4e-06, N = 1959) | (0.52, 0.11, P = 0.026, N = 859) |
rs9635769(T)/17:33288363 | CCT6B | (0.57, 0.0037, P = 4.9e-05, N = 7824) | (0.28, 0.081, P = 0.13, N = 859) |
rs4790581(T)/17:4066657 | ANKFY1 | (0.4, -0.0037, P = 3.2e-05, N = 7824) | (0.69, 0.0013, P = 0.98, N = 859) |
rs17842784(C)/17:41440236 | intergenic | (0.95, 0.011, P = 1.7e-05, N = 7824) | (0.56, 0.012, P = 0.81, N = 859) |
rs1825734(T)/17:50332557 | intergenic | (0.85, 0.0069, P = 4.2e-05, N = 7824) | (0.76, -0.037, P = 0.52, N = 859) |
rs11654913(A)/17:52369879 | intergenic | (0.56, -0.004, P = 6.9e-06, N = 7824) | (0.5, 0.039, P = 0.43, N = 859) |
rs8073123(A)/17:5773900* | WSCD1 | (0.49, 0.0038, P = 3e-05, N = 7824) | (0.37, -0.11, P = 0.023, N = 859) |
rs9947364(A)/18:25425442 | intergenic | (0.64, -0.004, P = 1.2e-05, N = 7824) | (0.49, 0.0031, P = 0.95, N = 859) |
rs11564346(T)/18:25826962 | intergenic | (0.51, 0.0037, P = 2.9e-05, N = 7824) | (0.5, -0.083, P = 0.092, N = 859) |
rs17801274(A)/18:28858921 | intergenic | (0.044, 0.011, P = 1.5e-05, N = 7824) | (0.13, -0.069, P = 0.33, N = 859) |
rs1037419(T)/18:31557113 | NOL4 | (0.58, -0.0039, P = 1.9e-05, N = 7824) | (0.73, -0.013, P = 0.81, N = 859) |
rs9948912(A)/18:34853641* | CELF4 | (0.36, 0.004, P = 9.6e-06, N = 7824) | (0.29, 0.15, P = 0.0035, N = 859) |
rs7230740(A)/18:3636288* | DLGAP1 | (0.67, 0.0044, P = 1.6e-06, N = 7824) | (0.72, 0.12, P = 0.028, N = 859) |
rs540343(A)/18:41007699 | intergenic | (0.62, -0.0037, P = 4.8e-05, N = 7824) | (0.83, -0.037, P = 0.56, N = 859) |
rs9989564(A)/18:41305359 | intergenic | (0.51, -0.0042, P = 3.1e-06, N = 7824) | (0.34, 0.019, P = 0.7, N = 859) |
rs4890592(A)/18:43370963 | RP11-618K16.4 | (0.63, -0.0038, P = 3.2e-05, N = 7824) | (0.77, -0.057, P = 0.32, N = 859) |
rs1623892(A)/18:47456441* | MYO5B | (0.44, 0.0038, P = 2.1e-05, N = 7824) | (0.58, -0.017, P = 0.73, N = 859) |
rs993927(T)/18:50101294 | DCC | (0.38, 0.0042, P = 2.6e-06, N = 7824) | (0.13, 0.027, P = 0.71, N = 859) |
rs9959836(A)/18:50225499* | DCC | (0.098, -0.0069, P = 4.3e-05, N = 7824) | (0.26, 0.043, P = 0.44, N = 859) |
rs9950125(A)/18:50548544 | DCC | (0.45, -0.004, P = 7.7e-06, N = 7824) | (0.43, -0.06, P = 0.23, N = 859) |
rs2658761(T)/18:54059039* | intergenic | (0.43, -0.0048, P = 6.7e-08, N = 7824) | (0.44, 0.028, P = 0.57, N = 859) |
rs8088963(A)/18:59047314* | CDH20 | (0.64, 0.0044, P = 8.3e-07, N = 7824) | (0.63, 0.0095, P = 0.85, N = 859) |
rs11152350(A)/18:60240352 | ZCCHC2 | (0.47, -0.0038, P = 1.9e-05, N = 7824) | (0.47, 0.029, P = 0.54, N = 859) |
rs860916(A)/18:60665539 | intergenic | (0.42, -0.0047, P = 1.5e-07, N = 7824) | (0.9, 0.1, P = 0.2, N = 859) |
rs7505177(T)/18:75220892 | RP11-176N18.2 | (0.41, -0.0043, P = 5.9e-06, N = 7824) | (0.75, -0.00022, P = 1, N = 859) |
rs1249489(A)/18:8711942 | RP11-674N23.1 | (0.37, 0.0042, P = 3.7e-06, N = 7824) | (0.68, -0.024, P = 0.65, N = 859) |
rs8110890(T)/19:19848485* | ZNF14 | (0.47, 0.0045, P = 7.5e-07, N = 7824) | (0.64, -0.091, P = 0.06, N = 859) |
rs7246393(A)/19:23388805 | RP11-15H20.2 | (0.52, 0.0043, P = 1.6e-06, N = 7824) | (0.81, -0.035, P = 0.56, N = 859) |
rs1834970(A)/19:28615716 | CTD-2043I16.1 | (0.43, 0.0037, P = 4e-05, N = 7824) | (0.27, 0.055, P = 0.31, N = 859) |
rs7251154(A)/19:42305941 | CEACAM3 | (0.37, -0.0037, P = 4.5e-05, N = 7824) | (0.63, 0.051, P = 0.31, N = 859) |
rs6509523(T)/19:51767205 | SIGLECL1 | (0.5, 0.0043, P = 2.5e-06, N = 7824) | (0.79, -0.022, P = 0.71, N = 859) |
rs875283(A)/19:51767485 | SIGLECL1 | (0.49, -0.0043, P = 2.3e-06, N = 7824) | (0.2, 0.0046, P = 0.94, N = 859) |
rs10406056(T)/19:9536418* | ZNF266 | (0.58, 0.0039, P = 1.6e-05, N = 7824) | (0.66, 0.048, P = 0.35, N = 859) |
rs13001325(T)/2:102939036 | IL1RL1 | (0.38, -0.004, P = 7.4e-06, N = 7824) | (0.15, 0.033, P = 0.64, N = 859) |
rs6729061(A)/2:106182953* | intergenic | (0.37, 0.004, P = 1.1e-05, N = 7824) | (0.6, 0.061, P = 0.22, N = 859) |
rs4849291(C)/2:114594099* | AC104653.1 | (0.61, 0.0041, P = 5.9e-06, N = 7824) | (0.12, -0.041, P = 0.58, N = 859) |
rs7584842(T)/2:11756260* | GREB1 | (0.54, -0.005, P = 4.2e-08, N = 7824) | (0.43, 0.0034, P = 0.94, N = 859) |
rs2580344(T)/2:122047352* | TFCP2L1 | (0.62, 0.0044, P = 8e-07, N = 7824) | (0.53, -0.042, P = 0.38, N = 859) |
rs4063769(T)/2:132731387* | AJ239322.1 | (0.53, -0.0043, P = 1.3e-06, N = 7824) | (0.83, 0.02, P = 0.76, N = 859) |
rs1316293(A)/2:156659919* | intergenic | (0.6, -0.0039, P = 1.7e-05, N = 7824) | (0.62, 0.036, P = 0.47, N = 859) |
rs1534259(T)/2:156911378* | intergenic | (0.5, 0.0038, P = 2.8e-05, N = 7824) | (0.64, 0.033, P = 0.51, N = 859) |
rs16843561(T)/2:159875840 | TANC1 | (0.1, -0.0073, P = 1.7e-05, N = 7824) | (0.084, 0.21, P = 0.019, N = 859) |
rs4972588(A)/2:174444590 | AC013410.1 | (0.51, -0.0046, P = 3.7e-07, N = 7824) | (0.27, 0.016, P = 0.78, N = 859) |
rs577687(A)/2:174451691* | intergenic | (0.61, -0.0043, P = 2.3e-06, N = 7824) | (0.66, -0.013, P = 0.8, N = 859) |
rs7570357(A)/2:181079460 | intergenic | (0.45, -0.0037, P = 4.5e-05, N = 7824) | (0.25, 0.033, P = 0.55, N = 859) |
rs288354(A)/2:183679421* | intergenic | (0.59, -0.004, P = 1.1e-05, N = 7824) | (0.74, -0.056, P = 0.32, N = 859) |
rs10931041(T)/2:183685562 | intergenic | (0.58, -0.0042, P = 3.4e-06, N = 7824) | (0.47, 0.009, P = 0.85, N = 859) |
rs7421372(A)/2:1855717* | MYT1L | (0.48, 0.0037, P = 3.9e-05, N = 7824) | (0.7, -0.07, P = 0.19, N = 859) |
rs7597815(A)/2:188436536* | intergenic | (0.58, -0.0038, P = 2.7e-05, N = 7824) | (0.8, -0.088, P = 0.13, N = 859) |
rs992005(C)/2:199504765 | AC019330.1 | (0.58, -0.0039, P = 1.5e-05, N = 7824) | (0.81, -0.0098, P = 0.87, N = 859) |
rs295142(A)/2:201211716 | SPATS2L | (0.59, -0.0048, P = 1.5e-07, N = 7824) | (0.37, -0.03, P = 0.55, N = 859) |
rs2349729(A)/2:202521624 | MPP4 | (0.51, -0.0041, P = 6.4e-06, N = 7824) | (0.71, -0.03, P = 0.58, N = 859) |
rs6730726(A)/2:205154353 | intergenic | (0.53, -0.004, P = 7.2e-06, N = 7824) | (0.23, 0.034, P = 0.55, N = 859) |
rs1453165(A)/2:207813972 | CPO | (0.46, 0.0038, P = 2.6e-05, N = 7824) | (0.63, 0.072, P = 0.16, N = 859) |
rs2854717(A)/2:208996761 | CRYGC | (0.65, -0.0037, P = 4.9e-05, N = 7824) | (0.74, 0.064, P = 0.24, N = 859) |
rs2286963(T)/2:211060050* | ACADL | (0.65, 0.0039, P = 1.1e-05, N = 7824) | (0.87, 0.0011, P = 0.99, N = 859) |
rs6435723(T)/2:213580723* | AC079610.1 | (0.9, -0.008, P = 6.9e-06, N = 7824) | (0.91, 0.067, P = 0.42, N = 859) |
rs207938(A)/2:217041881 | XRCC5 | (0.4, -0.0043, P = 1.3e-06, N = 7824) | (0.2, -0.094, P = 0.12, N = 859) |
rs1835335(T)/2:218636444 | intergenic | (0.48, -0.0038, P = 1.8e-05, N = 7824) | (0.59, 0.046, P = 0.34, N = 859) |
rs6735596(A)/2:228093883* | COL4A3 | (0.63, -0.0038, P = 3.4e-05, N = 7824) | (0.7, -0.001, P = 0.98, N = 859) |
rs12468084(T)/2:230596352* | intergenic | (0.54, -0.0044, P = 1.2e-06, N = 7824) | (0.25, -0.034, P = 0.53, N = 859) |
rs11678851(T)/2:233825947 | NGEF | (0.41, 0.0041, P = 5.9e-06, N = 7824) | (0.27, -0.022, P = 0.69, N = 859) |
rs4663553(A)/2:236100852 | intergenic | (0.89, 0.0073, P = 1.5e-05, N = 7824) | (0.39, 0.012, P = 0.8, N = 859) |
rs6736036(T)/2:239834334 | intergenic | (0.1, -0.22, P = 2.6e-06, N = 1959) | (0.26, -0.02, P = 0.71, N = 859) |
rs719564(A)/2:242101368 | PPP1R7 | (0.61, 0.0044, P = 1.3e-06, N = 7824) | (0.88, 0.077, P = 0.29, N = 859) |
rs6746911(A)/2:2587538* | intergenic | (0.57, -0.0037, P = 3.7e-05, N = 7824) | (0.48, -0.0048, P = 0.92, N = 859) |
rs2304681(A)/2:27315252* | KHK | (0.37, -0.0037, P = 3.7e-05, N = 7824) | (0.31, 0.042, P = 0.43, N = 859) |
rs1260326(T)/2:27730940* | GCKR | (0.4, 0.0042, P = 2.7e-06, N = 7824) | (0.14, -0.019, P = 0.79, N = 859) |
rs829590(T)/2:30623062 | intergenic | (0.46, -0.0038, P = 1.8e-05, N = 7824) | (0.31, -0.021, P = 0.69, N = 859) |
rs7594598(A)/2:31026603 | CAPN13 | (0.43, 0.004, P = 9.5e-06, N = 7824) | (0.21, -0.025, P = 0.67, N = 859) |
rs7582140(T)/2:3326203 | TSSC1 | (0.64, 0.0038, P = 3e-05, N = 7824) | (0.39, -0.11, P = 0.022, N = 859) |
rs1448561(A)/2:33854344 | intergenic | (0.52, 0.0037, P = 4.1e-05, N = 7824) | (0.64, -0.0088, P = 0.87, N = 859) |
rs6747650(A)/2:3451507 | TRAPPC12 | (0.58, -0.0041, P = 4.4e-06, N = 7824) | (0.78, 0.045, P = 0.43, N = 859) |
rs6708411(T)/2:37718181* | intergenic | (0.52, -0.0038, P = 1.6e-05, N = 7824) | (0.54, 0.023, P = 0.64, N = 859) |
rs1371404(A)/2:43040577 | intergenic | (0.44, 0.0038, P = 2.5e-05, N = 7824) | (0.61, 0.062, P = 0.21, N = 859) |
rs3936042(T)/2:43107039* | intergenic | (0.39, 0.0038, P = 2.5e-05, N = 7824) | (0.18, 0.045, P = 0.46, N = 859) |
rs1530625(T)/2:46658067 | TMEM247 | (0.46, 0.0038, P = 2.3e-05, N = 7824) | (0.42, -0.031, P = 0.53, N = 859) |
rs17038105(A)/2:49266747 | FSHR | (0.98, -0.016, P = 2.2e-05, N = 7824) | (0.7, 0.087, P = 0.096, N = 859) |
rs4971590(A)/2:52528277* | AC007682.1 | (0.4, 0.0039, P = 1.6e-05, N = 7824) | (0.62, 0.00046, P = 0.99, N = 859) |
rs12329050(A)/2:55894428 | PNPT1 | (0.4, -0.0037, P = 4.6e-05, N = 7824) | (0.62, 0.0072, P = 0.88, N = 859) |
rs13008096(A)/2:62792689 | RSL24D1P2 | (0.4, -0.0042, P = 3.3e-06, N = 7824) | (0.81, 0.0011, P = 0.99, N = 859) |
rs6759991(T)/2:75696816 | AC007099.2 | (0.86, 0.0076, P = 2.5e-06, N = 7824) | (0.59, -0.017, P = 0.72, N = 859) |
rs11126537(T)/2:76744940* | intergenic | (0.55, 0.0036, P = 4.7e-05, N = 7824) | (0.33, 0.012, P = 0.82, N = 859) |
rs2861078(A)/2:77697995* | LRRTM4 | (0.54, 0.0038, P = 2.7e-05, N = 7824) | (0.63, 0.038, P = 0.45, N = 859) |
rs10171387(A)/2:80261406 | CTNNA2 | (0.91, 0.008, P = 5.1e-06, N = 7824) | (0.98, 0.25, P = 0.16, N = 859) |
rs3927971(T)/2:8776102 | intergenic | (0.52, 0.0042, P = 9e-06, N = 7824) | (0.42, -0.018, P = 0.71, N = 859) |
rs11691641(A)/2:98360443 | ZAP70 | (0.48, -0.0037, P = 4.1e-05, N = 7824) | (0.39, -0.041, P = 0.41, N = 859) |
rs6079133(A)/20:1419294 | NSFL1C | (0.43, 0.0038, P = 2.4e-05, N = 7824) | (0.28, -0.044, P = 0.42, N = 859) |
rs6074798(A)/20:14761710 | MACROD2 | (0.5, -0.0037, P = 3.3e-05, N = 7824) | (0.22, 0.02, P = 0.73, N = 859) |
rs6110544(T)/20:15166775 | MACROD2 | (0.44, 0.004, P = 7e-06, N = 7824) | (0.2, 0.047, P = 0.43, N = 859) |
rs2208167(A)/20:20239744 | C20orf26 | (0.53, 0.0037, P = 3.1e-05, N = 7824) | (0.57, 0.0029, P = 0.95, N = 859) |
rs6036180(A)/20:22679977 | intergenic | (0.58, -0.0037, P = 5e-05, N = 7824) | (0.89, -0.1, P = 0.2, N = 859) |
rs6075944(A)/20:22725941 | intergenic | (0.21, -0.0062, P = 4.3e-05, N = 7824) | (0.22, -0.0025, P = 0.97, N = 859) |
rs6130271(T)/20:41612425* | PTPRT | (0.54, -0.004, P = 7.4e-06, N = 7824) | (0.51, -0.038, P = 0.43, N = 859) |
rs7262469(A)/20:4184858 | intergenic | (0.53, 0.0039, P = 2.2e-05, N = 7824) | (0.091, 0.048, P = 0.57, N = 859) |
rs112259693(A)/20:42794090 | JPH2 | (0.072, 0.24, P = 5.4e-06, N = 1959) | (0.016, -0.17, P = 0.37, N = 859) |
rs2425672(A)/20:43526137 | YWHAB | (0.43, -0.0038, P = 2.6e-05, N = 7824) | (0.3, 0.024, P = 0.65, N = 859) |
rs459011(A)/20:44364020* | intergenic | (0.63, 0.0038, P = 3.7e-05, N = 7824) | (0.34, 0.019, P = 0.72, N = 859) |
rs6104350(A)/20:44423843* | DNTTIP1 | (0.65, 0.0037, P = 4.6e-05, N = 7824) | (0.36, 0.035, P = 0.47, N = 859) |
rs8183309(A)/20:49076893 | intergenic | (0.59, 0.0038, P = 2.7e-05, N = 7824) | (0.75, -0.055, P = 0.32, N = 859) |
rs4811174(T)/20:50048133 | NFATC2 | (0.47, -0.0037, P = 4.6e-05, N = 7824) | (0.77, -0.045, P = 0.43, N = 859) |
rs1276434(T)/20:55479307* | intergenic | (0.55, 0.0038, P = 2.3e-05, N = 7824) | (0.63, -0.016, P = 0.75, N = 859) |
rs1418942(A)/20:58164306* | PHACTR3 | (0.58, -0.004, P = 7.1e-06, N = 7824) | (0.85, 0.02, P = 0.76, N = 859) |
rs6101058(T)/20:59336158 | intergenic | (0.063, -0.0096, P = 3.4e-05, N = 7824) | (0.14, -0.024, P = 0.72, N = 859) |
rs1884639(T)/20:719854* | intergenic | (0.39, 0.0039, P = 1.7e-05, N = 7824) | (0.5, -0.097, P = 0.047, N = 859) |
rs6077611(T)/20:9893691 | intergenic | (0.48, -0.0041, P = 5.3e-06, N = 7824) | (0.25, 0.024, P = 0.67, N = 859) |
rs1663501(A)/21:28219307* | ADAMTS1 | (0.46, -0.0047, P = 2.4e-07, N = 7824) | (0.57, 0.08, P = 0.098, N = 859) |
rs1155158(C)/21:29039413 | intergenic | (0.5, 0.0037, P = 4.4e-05, N = 7824) | (0.35, 0.047, P = 0.35, N = 859) |
rs2834164(A)/21:34621948* | IFNAR2 | (0.5, -0.0045, P = 4.8e-07, N = 7824) | (0.55, 0.068, P = 0.16, N = 859) |
rs6517254(T)/21:36080290* | CLIC6 | (0.4, -0.0042, P = 3.1e-06, N = 7824) | (0.63, 0.037, P = 0.46, N = 859) |
rs460574(T)/21:39986245 | ERG | (0.43, 0.0038, P = 2.4e-05, N = 7824) | (0.29, 0.12, P = 0.033, N = 859) |
rs2836842(T)/21:40392537* | intergenic | (0.57, -0.0038, P = 2.2e-05, N = 7824) | (0.44, 0.02, P = 0.68, N = 859) |
rs1015993(T)/21:42005288* | DSCAM | (0.47, 0.0041, P = 7.3e-06, N = 7824) | (0.59, 0.034, P = 0.49, N = 859) |
rs6586235(A)/21:43174436 | RIPK4 | (0.46, 0.0043, P = 1.6e-06, N = 7824) | (0.42, 0.12, P = 0.012, N = 859) |
rs150795(A)/21:43462379* | intergenic | (0.56, 0.0039, P = 1.5e-05, N = 7824) | (0.65, 0.0054, P = 0.91, N = 859) |
rs234705(T)/21:44483772* | CBS | (0.35, 0.004, P = 1.2e-05, N = 7824) | (0.24, 0.013, P = 0.81, N = 859) |
rs9941787(A)/21:45116042* | RRP1B | (0.39, -0.0039, P = 2.6e-05, N = 7824) | (0.23, 0.014, P = 0.81, N = 859) |
rs2838569(C)/21:45898223* | MTND5P1 | (0.5, -0.0038, P = 2.6e-05, N = 7824) | (0.79, -0.021, P = 0.73, N = 859) |
rs4819811(A)/22:19609256 | intergenic | (0.37, 0.0038, P = 3e-05, N = 7824) | (0.23, 0.06, P = 0.3, N = 859) |
rs6001129(T)/22:22506340* | LL22NC03-30E12.10 | (0.13, -0.009, P = 6.8e-06, N = 7824) | (0.41, -0.047, P = 0.34, N = 859) |
rs5997110(T)/22:27036505 | ISCA2P1 | (0.52, -0.005, P = 5.7e-07, N = 7824) | (0.42, -0.021, P = 0.66, N = 859) |
rs1884134(A)/22:27831650 | intergenic | (0.63, 0.0039, P = 1.9e-05, N = 7824) | (0.66, -0.093, P = 0.064, N = 859) |
rs9613768(T)/22:29402832 | ZNRF3 | (0.41, 0.0038, P = 1.9e-05, N = 7824) | (0.076, -0.15, P = 0.11, N = 859) |
rs13056963(T)/22:33622667* | LARGE | (0.44, 0.0043, P = 5.6e-06, N = 7824) | (0.27, -0.12, P = 0.02, N = 859) |
rs9610322(A)/22:35980173 | intergenic | (0.52, -0.0043, P = 1.1e-06, N = 7824) | (0.41, 0.064, P = 0.19, N = 859) |
rs2144411(A)/22:47478839 | TBC1D22A | (0.38, -0.0037, P = 3.6e-05, N = 7824) | (0.46, 0.08, P = 0.099, N = 859) |
rs4824056(A)/22:49928073 | C22orf34 | (0.82, 0.011, P = 1.8e-05, N = 7824) | (0.33, -0.02, P = 0.71, N = 859) |
rs7621216(A)/3:112463310 | RP11-572C15.5 | (0.47, 0.0036, P = 4.8e-05, N = 7824) | (0.74, -0.19, P = 3e-04, N = 859) |
rs3772343(A)/3:1273716 | CNTN6 | (0.99, 0.028, P = 3.1e-06, N = 7824) | (0.99, -0.25, P = 0.24, N = 859) |
rs62284469(T)/3:151185595 | intergenic | (0.28, 0.13, P = 3.1e-06, N = 1959) | (0.15, -0.056, P = 0.4, N = 859) |
rs11719675(A)/3:168353685 | EGFEM1P | (0.4, -0.0041, P = 5.1e-06, N = 7824) | (0.5, 0.074, P = 0.12, N = 859) |
rs1798231(A)/3:169921441 | intergenic | (0.42, -0.0038, P = 3.2e-05, N = 7824) | (0.35, -0.049, P = 0.32, N = 859) |
rs16848052(A)/3:172247863* | intergenic | (0.016, -0.033, P = 2e-05, N = 7824) | (0.11, 0.00058, P = 0.99, N = 859) |
rs4129414(T)/3:178385917 | KCNMB2 | (0.6, -0.0039, P = 1.2e-05, N = 7824) | (0.82, -0.016, P = 0.8, N = 859) |
rs11720862(T)/3:1838974* | intergenic | (0.6, -0.0046, P = 3.6e-07, N = 7824) | (0.53, -0.015, P = 0.75, N = 859) |
rs12497219(T)/3:1861001 | intergenic | (0.55, -0.0045, P = 5.3e-07, N = 7824) | (0.72, -0.00026, P = 1, N = 859) |
rs4686980(T)/3:188302851 | LPP | (0.36, 0.005, P = 5.7e-07, N = 7824) | (0.41, 0.016, P = 0.74, N = 859) |
rs1013667(A)/3:191089680 | CCDC50 | (0.61, -0.0041, P = 5.7e-06, N = 7824) | (0.31, -0.025, P = 0.63, N = 859) |
rs972459(T)/3:191855497 | FGF12 | (0.58, 0.005, P = 2e-08, N = 7824) | (0.91, 0.022, P = 0.79, N = 859) |
rs9877345(A)/3:197808975 | ANKRD18DP | (0.56, -0.0039, P = 1.5e-05, N = 7824) | (0.59, 0.0041, P = 0.93, N = 859) |
rs1356792(A)/3:20378153* | intergenic | (0.58, 0.0037, P = 3.8e-05, N = 7824) | (0.76, 0.017, P = 0.77, N = 859) |
rs4306882(T)/3:21062584* | intergenic | (0.62, -0.0057, P = 2.5e-10, N = 7824) | (0.65, -0.025, P = 0.62, N = 859) |
rs116683205(A)/3:22515451 | intergenic | (0.2, 0.23, P = 6.7e-06, N = 1959) | (0.31, -0.033, P = 0.52, N = 859) |
rs4356783(C)/3:25004834 | AC133680.1 | (0.59, -0.0041, P = 6.7e-06, N = 7824) | (0.54, -0.034, P = 0.49, N = 859) |
rs9842801(C)/3:25047228* | AC133680.1 | (0.51, 0.0044, P = 7.9e-07, N = 7824) | (0.29, 0.017, P = 0.74, N = 859) |
rs6786397(A)/3:31721774 | OSBPL10 | (0.58, -0.0038, P = 2.5e-05, N = 7824) | (0.18, 0.011, P = 0.86, N = 859) |
rs430727(T)/3:41128564 | intergenic | (0.46, 0.0041, P = 5.1e-06, N = 7824) | (0.36, 0.055, P = 0.29, N = 859) |
rs4973952(C)/3:41525357* | ULK4 | (0.41, -0.0041, P = 6.5e-06, N = 7824) | (0.48, 0.019, P = 0.69, N = 859) |
rs6807794(T)/3:446221 | CHL1 | (0.033, 0.39, P = 5.5e-06, N = 1959) | (0.32, 0.031, P = 0.55, N = 859) |
rs7638383(A)/3:4994341 | BHLHE40-AS1 | (0.4, 0.0047, P = 1.6e-07, N = 7824) | (0.36, -0.083, P = 0.1, N = 859) |
rs341973(T)/3:5268162 | intergenic | (0.49, 0.005, P = 5.7e-07, N = 7824) | (0.66, 0.0074, P = 0.88, N = 859) |
rs3773729(T)/3:53204845* | PRKCD | (0.63, 0.004, P = 8.6e-06, N = 7824) | (0.3, 0.025, P = 0.64, N = 859) |
rs6793158(A)/3:55235233* | intergenic | (0.47, -0.0039, P = 1.1e-05, N = 7824) | (0.27, -0.021, P = 0.68, N = 859) |
rs1403699(T)/3:63415109 | SYNPR | (0.47, -0.0038, P = 1.7e-05, N = 7824) | (0.76, 0.073, P = 0.19, N = 859) |
rs11706832(A)/3:66502981 | LRIG1 | (0.52, -0.0038, P = 2e-05, N = 7824) | (0.86, 0.021, P = 0.76, N = 859) |
rs3864070(T)/3:7691250* | GRM7 | (0.61, -0.0037, P = 4.1e-05, N = 7824) | (0.57, 0.043, P = 0.38, N = 859) |
rs4684599(T)/3:8626572 | AC034187.2 | (0.63, -0.0042, P = 2.9e-06, N = 7824) | (0.73, 0.03, P = 0.57, N = 859) |
rs7675057(T)/4:104007996 | BDH2 | (0.81, -0.0064, P = 4.8e-05, N = 7824) | (0.68, 0.027, P = 0.6, N = 859) |
rs958962(A)/4:109974200 | COL25A1 | (0.64, 0.0038, P = 2.6e-05, N = 7824) | (0.3, 0.049, P = 0.35, N = 859) |
rs4989308(A)/4:115289204 | intergenic | (0.37, -0.0045, P = 8.4e-07, N = 7824) | (0.55, 0.039, P = 0.41, N = 859) |
rs11729831(T)/4:11735115 | RP11-281P23.2 | (0.61, 0.004, P = 8.6e-06, N = 7824) | (0.39, 0.032, P = 0.51, N = 859) |
rs7663985(T)/4:12105392 | intergenic | (0.38, 0.0038, P = 3e-05, N = 7824) | (0.41, 0.032, P = 0.51, N = 859) |
rs6858525(A)/4:127425634 | intergenic | (0.15, 0.014, P = 1.4e-05, N = 7824) | (0.13, -0.0025, P = 0.97, N = 859) |
rs6534667(C)/4:129066488 | LARP1B | (0.42, -0.0043, P = 1.5e-06, N = 7824) | (0.16, 0.13, P = 0.046, N = 859) |
rs4975249(A)/4:129676063 | snoU13 | (0.62, 0.0039, P = 1.6e-05, N = 7824) | (0.32, 0.028, P = 0.6, N = 859) |
rs17034862(C)/4:135178352 | RP11-400D2.2 | (0.52, -0.004, P = 6.9e-06, N = 7824) | (0.45, 0.097, P = 0.052, N = 859) |
rs6537156(T)/4:139067202* | SLC7A11-AS1 | (0.45, 0.004, P = 8.1e-06, N = 7824) | (0.36, 0.09, P = 0.082, N = 859) |
rs1995960(A)/4:142916958 | intergenic | (0.59, -0.0047, P = 1.6e-07, N = 7824) | (0.14, 0.022, P = 0.75, N = 859) |
rs1878284(A)/4:153919578 | intergenic | (0.39, 0.0037, P = 4e-05, N = 7824) | (0.69, -0.00083, P = 0.99, N = 859) |
rs4691944(T)/4:156753174* | ASIC5 | (0.9, 0.011, P = 2e-10, N = 7824) | (0.97, -0.0081, P = 0.96, N = 859) |
rs67803018(T)/4:156769319 | ASIC5 | (0.072, -0.33, P = 1.3e-06, N = 1959) | (0.024, 0.2, P = 0.21, N = 859) |
rs13122250(T)/4:156808288* | TDO2 | (0.55, 0.0062, P = 8.9e-12, N = 7824) | (0.2, 0.024, P = 0.69, N = 859) |
rs6826247(T)/4:161635568 | intergenic | (0.51, 0.0048, P = 8.8e-08, N = 7824) | (0.36, -0.11, P = 0.025, N = 859) |
rs34686132(A)/4:169547663 | PALLD | (0.54, 0.19, P = 2e-06, N = 1959) | (0.25, -0.023, P = 0.68, N = 859) |
rs1508513(C)/4:172003439 | intergenic | (0.64, 0.0042, P = 2.4e-06, N = 7824) | (0.36, 0.049, P = 0.34, N = 859) |
rs9884164(A)/4:182662819 | intergenic | (0.098, 0.0077, P = 1.1e-05, N = 7824) | (0.13, -0.066, P = 0.36, N = 859) |
rs7687160(A)/4:183170004 | TENM3 | (0.44, 0.0039, P = 2.2e-05, N = 7824) | (0.65, 0.025, P = 0.62, N = 859) |
rs6841061(A)/4:185999543* | RP11-386B13.3 | (0.64, 0.0038, P = 2.3e-05, N = 7824) | (0.68, 0.073, P = 0.16, N = 859) |
rs1519309(T)/4:187015089* | intergenic | (0.65, -0.0044, P = 1.2e-06, N = 7824) | (0.4, -0.00082, P = 0.99, N = 859) |
rs12650762(A)/4:188071662 | intergenic | (0.5, 0.0038, P = 2.1e-05, N = 7824) | (0.81, -0.056, P = 0.37, N = 859) |
rs937382(T)/4:189971532 | intergenic | (0.45, -0.0046, P = 2.3e-07, N = 7824) | (0.54, 0.053, P = 0.28, N = 859) |
rs6819555(A)/4:27342170 | intergenic | (0.59, -0.0043, P = 3.7e-06, N = 7824) | (0.92, -0.054, P = 0.53, N = 859) |
rs4355437(A)/4:32728207 | intergenic | (0.61, 0.0036, P = 4.6e-05, N = 7824) | (0.61, -0.047, P = 0.33, N = 859) |
rs16990420(T)/4:34855432 | intergenic | (0.63, 0.0039, P = 1.5e-05, N = 7824) | (0.21, -0.054, P = 0.38, N = 859) |
rs10517336(T)/4:34920784* | intergenic | (0.36, 0.0039, P = 1.5e-05, N = 7824) | (0.41, -0.054, P = 0.28, N = 859) |
rs4695289(A)/4:43965710 | intergenic | (0.35, -0.0045, P = 7.9e-07, N = 7824) | (0.42, 0.082, P = 0.1, N = 859) |
rs10007704(T)/4:44276751* | KCTD8 | (0.64, -0.0044, P = 1.2e-06, N = 7824) | (0.59, 0.033, P = 0.5, N = 859) |
rs4695138(A)/4:45956180 | intergenic | (0.54, 0.0052, P = 8e-09, N = 7824) | (0.75, 0.003, P = 0.96, N = 859) |
rs1512142(A)/4:47004305 | GABRB1 | (0.44, -0.0038, P = 2.6e-05, N = 7824) | (0.45, 0.024, P = 0.62, N = 859) |
rs16836288(A)/4:4807203 | intergenic | (0.044, 0.013, P = 5.6e-06, N = 7824) | (0.34, 0.04, P = 0.42, N = 859) |
rs6554068(A)/4:54032319 | SCFD2 | (0.62, 0.0038, P = 2.2e-05, N = 7824) | (0.68, 0.052, P = 0.31, N = 859) |
rs11729908(T)/4:55221410* | RP11-231C18.1 | (0.5, 0.0039, P = 1.6e-05, N = 7824) | (0.71, -0.044, P = 0.41, N = 859) |
rs6824858(A)/4:57439695 | THEGL | (0.95, -0.013, P = 1e-05, N = 7824) | (0.85, -0.0045, P = 0.95, N = 859) |
rs12649436(A)/4:59015876 | intergenic | (0.51, 0.0038, P = 2.7e-05, N = 7824) | (0.75, 0.027, P = 0.63, N = 859) |
rs13112589(A)/4:8525162 | intergenic | (0.42, -0.0038, P = 2.7e-05, N = 7824) | (0.16, 0.027, P = 0.68, N = 859) |
rs12109383(T)/5:105956344 | intergenic | (0.64, -0.0039, P = 2.1e-05, N = 7824) | (0.75, 0.024, P = 0.66, N = 859) |
rs1697901(A)/5:11019405* | CTNND2 | (0.35, 0.0049, P = 6.3e-08, N = 7824) | (0.18, -0.026, P = 0.67, N = 859) |
rs10900784(A)/5:125514918 | RP11-114J13.1 | (0.42, -0.0044, P = 9.7e-07, N = 7824) | (0.74, 0.017, P = 0.76, N = 859) |
rs968355(A)/5:126140350* | LMNB1 | (0.59, 0.0037, P = 4.1e-05, N = 7824) | (0.62, 0.067, P = 0.17, N = 859) |
rs10071669(T)/5:126271596* | MARCH3 | (0.47, -0.004, P = 1e-05, N = 7824) | (0.39, -0.04, P = 0.42, N = 859) |
rs813165(A)/5:127144681 | CTC-228N24.1 | (0.61, -0.0039, P = 4e-05, N = 7824) | (0.82, -0.095, P = 0.13, N = 859) |
rs1422444(C)/5:128114022 | SLC27A6 | (0.37, 0.0039, P = 1.3e-05, N = 7824) | (0.25, 0.022, P = 0.7, N = 859) |
rs1434630(T)/5:136557055 | SPOCK1 | (0.15, 0.0071, P = 1.3e-05, N = 7824) | (0.33, 0.016, P = 0.75, N = 859) |
rs16903000(T)/5:13995236 | intergenic | (0.71, -0.0067, P = 7.9e-06, N = 7824) | (0.76, 0.011, P = 0.85, N = 859) |
rs2569188(A)/5:140008419 | CD14 | (0.51, 0.0037, P = 3.3e-05, N = 7824) | (0.55, 0.016, P = 0.74, N = 859) |
rs33980(C)/5:141941993 | RPS12P10 | (0.91, -0.0077, P = 9.1e-06, N = 7824) | (0.68, 0.0051, P = 0.92, N = 859) |
rs258763(A)/5:142652361 | intergenic | (0.56, -0.0042, P = 2.3e-06, N = 7824) | (0.34, 0.059, P = 0.24, N = 859) |
rs1016522(A)/5:143193326 | HMHB1 | (0.58, 0.0058, P = 1.6e-10, N = 7824) | (0.86, -0.11, P = 0.12, N = 859) |
rs161551(T)/5:143270815 | intergenic | (0.4, 0.0042, P = 2.7e-06, N = 7824) | (0.3, 0.0049, P = 0.93, N = 859) |
rs1042713(A)/5:148206440 | ADRB2 | (0.36, 0.0039, P = 1.5e-05, N = 7824) | (0.49, 0.044, P = 0.36, N = 859) |
rs4958379(A)/5:154010041* | intergenic | (0.43, -0.005, P = 2.2e-08, N = 7824) | (0.32, -0.0063, P = 0.9, N = 859) |
rs6873777(T)/5:156488903 | HAVCR1 | (0.38, -0.0039, P = 1.9e-05, N = 7824) | (0.38, 0.027, P = 0.6, N = 859) |
rs154246(T)/5:16602451 | FAM134B | (0.61, -0.0049, P = 6.7e-08, N = 7824) | (0.47, -0.0016, P = 0.97, N = 859) |
rs1501803(T)/5:166430508 | intergenic | (0.42, 0.0042, P = 4.6e-06, N = 7824) | (0.23, 0.043, P = 0.45, N = 859) |
rs1875977(T)/5:168250429* | SLIT3 | (0.57, 0.0038, P = 2.4e-05, N = 7824) | (0.74, 0.092, P = 0.092, N = 859) |
rs875184(T)/5:170124362 | KCNIP1 | (0.4, -0.0041, P = 5.7e-06, N = 7824) | (0.18, -0.037, P = 0.54, N = 859) |
rs4867633(A)/5:170258093 | intergenic | (0.41, -0.0036, P = 4.9e-05, N = 7824) | (0.59, 0.046, P = 0.35, N = 859) |
rs1559063(C)/5:172348594* | ERGIC1 | (0.62, 0.0052, P = 7.8e-09, N = 7824) | (0.78, 0.087, P = 0.14, N = 859) |
rs1549225(T)/5:174611949 | intergenic | (0.61, 0.0045, P = 6.1e-07, N = 7824) | (0.36, 0.045, P = 0.38, N = 859) |
rs5025649(A)/5:20358539 | CDH18 | (0.45, 0.0037, P = 4.2e-05, N = 7824) | (0.83, -0.054, P = 0.4, N = 859) |
rs10942222(T)/5:26970581 | CDH9 | (0.57, -0.0039, P = 1.5e-05, N = 7824) | (0.9, 0.11, P = 0.16, N = 859) |
rs2261659(C)/5:413594 | AHRR | (0.44, -0.0043, P = 1.6e-06, N = 7824) | (0.53, 0.026, P = 0.6, N = 859) |
rs7706787(T)/5:56336189 | intergenic | (0.12, 0.017, P = 4.1e-05, N = 7824) | (0.34, -0.0039, P = 0.94, N = 859) |
rs10805503(T)/5:57390158 | intergenic | (0.63, 0.0043, P = 2e-06, N = 7824) | (0.4, 0.013, P = 0.78, N = 859) |
rs347661(T)/5:62549141* | intergenic | (0.44, -0.0042, P = 6.8e-06, N = 7824) | (0.31, 0.019, P = 0.72, N = 859) |
rs4615256(A)/5:62700867 | intergenic | (0.53, 0.0049, P = 5e-08, N = 7824) | (0.74, -0.045, P = 0.42, N = 859) |
rs7730404(T)/5:72242733* | intergenic | (0.86, -0.012, P = 3.7e-05, N = 7824) | (0.93, -0.2, P = 0.037, N = 859) |
rs6862529(T)/5:75551209* | SV2C | (0.46, 0.0037, P = 4.4e-05, N = 7824) | (0.41, 0.051, P = 0.29, N = 859) |
rs3797435(A)/5:75953678 | IQGAP2 | (0.47, 0.0037, P = 4.1e-05, N = 7824) | (0.58, -0.046, P = 0.35, N = 859) |
rs353957(T)/5:77113027 | TBCA | (0.44, -0.0036, P = 4.6e-05, N = 7824) | (0.39, 0.027, P = 0.59, N = 859) |
rs1373962(T)/5:83527862 | EDIL3 | (0.6, 0.005, P = 2.7e-08, N = 7824) | (0.72, 0.041, P = 0.45, N = 859) |
rs3822782(T)/5:9245629 | SEMA5A | (0.43, 0.0039, P = 1.4e-05, N = 7824) | (0.24, 0.0031, P = 0.96, N = 859) |
rs2662269(A)/5:98076517 | intergenic | (0.42, 0.0045, P = 7.1e-07, N = 7824) | (0.38, 0.039, P = 0.44, N = 859) |
rs970079(A)/5:98119864 | RGMB | (0.49, -0.0041, P = 4.8e-06, N = 7824) | (0.14, 0.069, P = 0.32, N = 859) |
rs1876564(T)/6:106292430 | intergenic | (0.57, 0.0037, P = 4.6e-05, N = 7824) | (0.31, 0.053, P = 0.31, N = 859) |
rs2126498(T)/6:110336225 | intergenic | (0.62, -0.0042, P = 2.8e-06, N = 7824) | (0.48, 0.0085, P = 0.86, N = 859) |
rs6901004(C)/6:111554822* | RP11-428F8.2 | (0.57, -0.0061, P = 1.1e-11, N = 7824) | (0.44, -0.042, P = 0.38, N = 859) |
rs12203093(T)/6:111585382* | KIAA1919 | (0.86, -0.0075, P = 3.9e-06, N = 7824) | (0.98, 0.094, P = 0.56, N = 859) |
rs1535353(T)/6:123925257* | TRDN | (0.85, 0.007, P = 1.4e-05, N = 7824) | (0.68, -0.086, P = 0.1, N = 859) |
rs6935961(A)/6:125636350* | intergenic | (0.56, -0.0056, P = 3.8e-10, N = 7824) | (0.23, -0.031, P = 0.59, N = 859) |
rs4374833(T)/6:129169353 | intergenic | (0.45, 0.0037, P = 3.7e-05, N = 7824) | (0.62, -0.066, P = 0.2, N = 859) |
rs9482945(A)/6:129170987 | intergenic | (0.55, -0.0037, P = 3.7e-05, N = 7824) | (0.31, 0.02, P = 0.71, N = 859) |
rs11154507(A)/6:130144867* | RP11-174C7.3 | (0.51, 0.0039, P = 4e-05, N = 7824) | (0.79, 0.046, P = 0.43, N = 859) |
rs9483215(G)/6:131415664 | intergenic | (0.54, 0.11, P = 1.9e-06, N = 1959) | (0.78, 0.031, P = 0.59, N = 859) |
rs9476538(A)/6:14349707 | intergenic | (0.47, 0.0039, P = 2.8e-05, N = 7824) | (0.49, -0.012, P = 0.81, N = 859) |
rs2473156(A)/6:144660881 | UTRN | (0.6, -0.004, P = 1.1e-05, N = 7824) | (0.92, 0.1, P = 0.25, N = 859) |
rs4870304(A)/6:154991843 | intergenic | (0.58, 0.0041, P = 8.3e-06, N = 7824) | (0.39, 0.014, P = 0.77, N = 859) |
rs13197644(A)/6:159122879 | SYTL3 | (0.47, -0.0037, P = 5e-05, N = 7824) | (0.54, 0.029, P = 0.56, N = 859) |
rs17620480(T)/6:16035382 | intergenic | (0.46, -0.0037, P = 3.9e-05, N = 7824) | (0.57, 0.042, P = 0.38, N = 859) |
rs623897(A)/6:16769798 | RP1-151F17.2 | (0.36, -0.004, P = 1.5e-05, N = 7824) | (0.2, 0.02, P = 0.73, N = 859) |
rs806971(G)/6:26144791* | intergenic | (0.013, -0.93, P = 1.8e-06, N = 1959) | (0.33, 0.011, P = 0.84, N = 859) |
rs10807322(A)/6:45542617* | RP1-166H4.2 | (0.59, 0.0043, P = 2e-06, N = 7824) | (0.39, 0.026, P = 0.61, N = 859) |
rs9464137(A)/6:54669826 | intergenic | (0.56, 0.0041, P = 4.4e-06, N = 7824) | (0.5, -0.0016, P = 0.97, N = 859) |
rs508920(A)/6:69574261 | BAI3 | (0.52, -0.0038, P = 2e-05, N = 7824) | (0.23, 0.053, P = 0.34, N = 859) |
rs9346328(T)/6:70382139* | LMBRD1 | (0.41, -0.0038, P = 2.8e-05, N = 7824) | (0.23, 0.0093, P = 0.87, N = 859) |
rs2063601(A)/6:78578306* | MEI4 | (0.25, -0.011, P = 5.2e-06, N = 7824) | (0.063, -0.31, P = 0.0023, N = 859) |
rs6454864(T)/6:92234894* | MIR4643 | (0.37, 0.004, P = 8.9e-06, N = 7824) | (0.29, 0.086, P = 0.1, N = 859) |
rs201262(T)/6:9987615* | OFCC1 | (0.56, 0.0047, P = 1.4e-07, N = 7824) | (0.59, 0.085, P = 0.085, N = 859) |
rs42162(T)/7:106475927 | intergenic | (0.55, 0.004, P = 8.2e-06, N = 7824) | (0.76, 0.042, P = 0.46, N = 859) |
rs40903(A)/7:108173891 | PNPLA8 | (0.62, -0.0039, P = 1.8e-05, N = 7824) | (0.79, 0.034, P = 0.56, N = 859) |
rs13228748(T)/7:109785262 | intergenic | (0.35, 0.004, P = 1.3e-05, N = 7824) | (0.098, -0.053, P = 0.52, N = 859) |
rs2709480(T)/7:114694662* | intergenic | (0.63, 0.0037, P = 3.8e-05, N = 7824) | (0.46, -0.096, P = 0.046, N = 859) |
rs10261671(T)/7:120783551* | CPED1 | (0.38, -0.0037, P = 3.8e-05, N = 7824) | (0.35, 0.027, P = 0.59, N = 859) |
rs10225863(T)/7:131910303* | PLXNA4 | (0.39, -0.004, P = 9.8e-06, N = 7824) | (0.57, 0.043, P = 0.37, N = 859) |
rs6946136(A)/7:135423424 | FAM180A | (0.61, 0.0037, P = 4e-05, N = 7824) | (0.89, -0.032, P = 0.69, N = 859) |
rs38271(A)/7:14307031 | DGKB | (0.59, -0.0051, P = 1.2e-08, N = 7824) | (0.18, -0.013, P = 0.84, N = 859) |
rs4725832(T)/7:149543751 | ZNF862 | (0.59, 0.0038, P = 3.1e-05, N = 7824) | (0.29, 0.087, P = 0.11, N = 859) |
rs11760861(G)/7:155938607 | intergenic | (0.19, 0.23, P = 6.4e-06, N = 1959) | (0.37, 0.032, P = 0.52, N = 859) |
rs1000137(T)/7:157644152* | PTPRN2 | (0.47, -0.005, P = 5.7e-07, N = 7824) | (0.59, 0.025, P = 0.61, N = 859) |
rs12533939(A)/7:158450965 | NCAPG2 | (0.39, 0.0045, P = 6.5e-07, N = 7824) | (0.58, 0.033, P = 0.49, N = 859) |
rs12531256(T)/7:17281820 | intergenic | (0.5, 0.0037, P = 3.6e-05, N = 7824) | (0.26, -0.039, P = 0.48, N = 859) |
rs3800908(T)/7:2159437 | MAD1L1 | (0.42, -0.0081, P = 4.2e-05, N = 7824) | (0.57, 0.033, P = 0.48, N = 859) |
rs2722380(A)/7:24376142 | intergenic | (0.59, 0.0042, P = 3.9e-06, N = 7824) | (0.45, -0.031, P = 0.53, N = 859) |
rs4720151(A)/7:34160523* | BMPER | (0.6, 0.0039, P = 1.7e-05, N = 7824) | (0.75, -0.085, P = 0.12, N = 859) |
rs2109365(C)/7:38303120 | TRGC1 | (0.33, 0.16, P = 6.4e-06, N = 1959) | (0.57, 9.9e-05, P = 1, N = 859) |
rs11535192(C)/7:39324349* | POU6F2 | (0.39, -0.0039, P = 1.4e-05, N = 7824) | (0.36, 0.048, P = 0.35, N = 859) |
rs12702179(T)/7:45913913 | intergenic | (0.5, 0.0038, P = 2.1e-05, N = 7824) | (0.41, 0.044, P = 0.39, N = 859) |
rs1997238(A)/7:48538770 | ABCA13 | (0.51, 0.0045, P = 6.1e-07, N = 7824) | (0.91, 0.097, P = 0.23, N = 859) |
rs10239854(A)/7:55714282* | TUBBP6 | (0.46, -0.0039, P = 1.4e-05, N = 7824) | (0.3, -0.11, P = 0.033, N = 859) |
rs6947698(C)/7:55954993* | MRPS17 | (0.46, -0.004, P = 8.3e-06, N = 7824) | (0.4, 0.1, P = 0.037, N = 859) |
rs3843530(T)/7:64732388 | AC092685.1 | (0.06, -0.0099, P = 5e-05, N = 7824) | (0.1, 0.076, P = 0.35, N = 859) |
rs10256726(T)/7:70547132 | intergenic | (0.5, -0.0039, P = 1.8e-05, N = 7824) | (0.48, -0.016, P = 0.74, N = 859) |
rs2158735(C)/7:70601065 | WBSCR17 | (0.51, 0.0038, P = 2.8e-05, N = 7824) | (0.41, 0.038, P = 0.43, N = 859) |
rs1179636(A)/7:75230392 | HIP1 | (0.54, -0.0045, P = 1.8e-06, N = 7824) | (0.89, 0.045, P = 0.55, N = 859) |
rs10247586(T)/7:7980650 | RPA3-AS1 | (0.41, 0.0039, P = 1.5e-05, N = 7824) | (0.5, -0.039, P = 0.42, N = 859) |
rs7810390(A)/7:82662097 | PCLO | (0.59, -0.0045, P = 5.6e-07, N = 7824) | (0.45, 0.079, P = 0.11, N = 859) |
rs1208853(A)/7:88904674 | ZNF804B | (0.61, 0.0039, P = 1.8e-05, N = 7824) | (0.53, 0.011, P = 0.83, N = 859) |
rs2051957(T)/7:89709883* | STEAP2-AS1 | (0.75, 0.0066, P = 1.7e-05, N = 7824) | (0.33, 0.042, P = 0.41, N = 859) |
rs651430(A)/7:99429843* | CYP3A43 | (0.53, 0.004, P = 1.4e-05, N = 7824) | (0.16, -0.043, P = 0.49, N = 859) |
rs1013482(A)/8:110505710 | PKHD1L1 | (0.38, 0.0047, P = 1.7e-07, N = 7824) | (0.54, -0.0066, P = 0.89, N = 859) |
rs7463805(T)/8:110753672 | intergenic | (0.52, -0.0053, P = 4.6e-09, N = 7824) | (0.36, 0.0033, P = 0.95, N = 859) |
rs4076446(T)/8:130706301 | intergenic | (0.47, -0.0038, P = 3.9e-05, N = 7824) | (0.48, -0.039, P = 0.42, N = 859) |
rs4144737(A)/8:130761182* | GSDMC | (0.58, 0.004, P = 9.9e-06, N = 7824) | (0.24, 0.067, P = 0.24, N = 859) |
rs9649963(T)/8:131697816* | intergenic | (0.63, 0.0041, P = 5.8e-06, N = 7824) | (0.81, -0.069, P = 0.26, N = 859) |
rs7006068(T)/8:142656636* | intergenic | (0.63, 0.0045, P = 4.8e-07, N = 7824) | (0.36, 0.093, P = 0.068, N = 859) |
rs2717586(A)/8:143897882 | RP11-706C16.8 | (0.4, 0.0043, P = 2.3e-06, N = 7824) | (0.27, -0.046, P = 0.38, N = 859) |
rs1366671(T)/8:15488238* | TUSC3 | (0.44, -0.0041, P = 4.9e-06, N = 7824) | (0.5, 0.013, P = 0.8, N = 859) |
rs2604365(T)/8:15614315 | TUSC3 | (0.64, 0.0044, P = 1.5e-06, N = 7824) | (0.87, 0.06, P = 0.4, N = 859) |
rs2055092(A)/8:16838292* | intergenic | (0.38, -0.004, P = 1.3e-05, N = 7824) | (0.41, -0.017, P = 0.72, N = 859) |
rs10087419(T)/8:236656* | intergenic | (0.6, -0.0039, P = 1.9e-05, N = 7824) | (0.3, 0.014, P = 0.78, N = 859) |
rs7012981(T)/8:29383034 | RP11-486M23.1 | (0.52, 0.17, P = 7.4e-06, N = 1959) | (0.1, -0.11, P = 0.15, N = 859) |
rs4355794(A)/8:3154167 | CSMD1 | (0.35, -0.0038, P = 1.9e-05, N = 7824) | (0.56, 0.039, P = 0.42, N = 859) |
rs2554639(T)/8:3939181 | CSMD1 | (0.54, 0.0039, P = 3.1e-05, N = 7824) | (0.23, -0.077, P = 0.19, N = 859) |
rs4736967(A)/8:41182841 | intergenic | (0.6, 0.0037, P = 4.9e-05, N = 7824) | (0.84, -0.019, P = 0.78, N = 859) |
rs13281365(T)/8:55477437 | RP11-53M11.3 | (0.39, 0.0038, P = 3.4e-05, N = 7824) | (0.1, 0.014, P = 0.87, N = 859) |
rs1849395(T)/8:5657312 | intergenic | (0.5, -0.0039, P = 1.3e-05, N = 7824) | (0.57, -0.039, P = 0.43, N = 859) |
rs6471830(A)/8:60713371 | intergenic | (0.54, 0.0038, P = 2.2e-05, N = 7824) | (0.76, -0.029, P = 0.61, N = 859) |
rs7009696(T)/8:72731717* | U8 | (0.62, 0.0041, P = 6.2e-06, N = 7824) | (0.49, -0.057, P = 0.23, N = 859) |
rs4588900(A)/8:73890425 | intergenic | (0.52, 0.0038, P = 2.6e-05, N = 7824) | (0.32, -0.043, P = 0.4, N = 859) |
rs10808793(T)/8:74060655 | intergenic | (0.49, -0.0038, P = 1.9e-05, N = 7824) | (0.73, 0.024, P = 0.67, N = 859) |
rs75534375(T)/8:76013726 | intergenic | (0.07, -0.33, P = 1.7e-06, N = 1959) | (0.014, 0.21, P = 0.31, N = 859) |
rs2941461(T)/8:76447309 | HNF4G | (0.24, 0.2, P = 5.7e-06, N = 1959) | (0.37, -0.036, P = 0.47, N = 859) |
rs7843149(T)/8:91474961 | AF070718.1 | (0.39, -0.0041, P = 6.6e-06, N = 7824) | (0.79, -0.011, P = 0.85, N = 859) |
rs7027650(A)/9:101741969 | COL15A1 | (0.63, 0.0037, P = 4.6e-05, N = 7824) | (0.34, 0.031, P = 0.54, N = 859) |
rs1929487(A)/9:104272503* | TMEM246 | (0.42, -0.0041, P = 4.9e-06, N = 7824) | (0.23, 0.0096, P = 0.87, N = 859) |
rs833413(T)/9:10555561 | PTPRD | (0.48, 0.0037, P = 4.6e-05, N = 7824) | (0.6, -0.02, P = 0.68, N = 859) |
rs893922(A)/9:112060144 | EPB41L4B | (0.37, 0.0042, P = 3.9e-06, N = 7824) | (0.15, -0.033, P = 0.64, N = 859) |
rs915281(T)/9:119967963* | ASTN2 | (0.51, -0.0041, P = 4.4e-06, N = 7824) | (0.25, -0.072, P = 0.19, N = 859) |
rs9299251(A)/9:120184143 | intergenic | (0.37, -0.0037, P = 3.6e-05, N = 7824) | (0.18, 0.038, P = 0.54, N = 859) |
rs10819114(T)/9:128846829 | RP11-343J18.2 | (0.26, 0.21, P = 1.7e-06, N = 1959) | (0.29, 0.022, P = 0.68, N = 859) |
rs7028558(T)/9:128918482* | RP11-343J18.2 | (0.48, 0.0039, P = 1.2e-05, N = 7824) | (0.25, -0.013, P = 0.81, N = 859) |
rs625958(G)/9:136842109 | VAV2 | (0.6, -0.15, P = 2.4e-06, N = 1959) | (0.65, -0.075, P = 0.13, N = 859) |
rs2224447(C)/9:17624700* | SH3GL2 | (0.53, 0.0037, P = 3.5e-05, N = 7824) | (0.78, -0.062, P = 0.29, N = 859) |
rs2383131(T)/9:19902822 | intergenic | (0.44, -0.0043, P = 3.1e-06, N = 7824) | (0.69, 0.031, P = 0.54, N = 859) |
rs12350168(T)/9:31257450 | SLC25A6P2 | (0.46, 0.0037, P = 4.1e-05, N = 7824) | (0.19, 0.012, P = 0.84, N = 859) |
rs3780494(T)/9:33126224 | B4GALT1 | (0.99, -0.023, P = 7e-06, N = 7824) | (0.98, 0.071, P = 0.71, N = 859) |
rs776008(C)/9:37921959* | SHB | (0.47, 0.004, P = 1e-05, N = 7824) | (0.4, 0.026, P = 0.59, N = 859) |
rs458552(T)/9:4833437 | RCL1 | (0.59, -0.0037, P = 4.2e-05, N = 7824) | (0.18, 0.026, P = 0.68, N = 859) |
rs1009282(A)/9:77752967 | OSTF1 | (0.43, 0.0037, P = 4.4e-05, N = 7824) | (0.75, 0.15, P = 0.0053, N = 859) |
rs1502682(C)/9:85617668* | RASEF | (0.49, -0.0037, P = 3.4e-05, N = 7824) | (0.47, 0.044, P = 0.35, N = 859) |
rs9330454(A)/9:92515514 | RP5-1050E16.2 | (0.4, -0.0066, P = 6e-06, N = 7824) | (0.54, 0.012, P = 0.8, N = 859) |
rs6478302(T)/9:98392340 | intergenic | (0.38, 0.004, P = 1.1e-05, N = 7824) | (0.34, 0.037, P = 0.47, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 505 | 0.0054 (-0.071- 0.082) P=0.89 | 1.2 | 30 | 0 (0- 89.1) | NA | NA | -0.0052 P=0.038 |
MR-Egger | 505 | 0.026 (-0.054- 0.11) P=0.53 | 1.2 | 30 | 0 (0- 89.1) | 488 | 0.67 | -0.0052 P=0.038 |
Weighted median | 505 | -0.0063 (-0.12- 0.11) P=0.91 | 1.2 | 30 | 0 (0- 89.1) | NA | NA | -0.0052 P=0.038 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.01 | 0.04 | 0.14 | 0.89 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 348 | 0.033 (-0.072- 0.14) P=0.54 | 1.6 | 27 | 0 (0- 27.3) | NA | NA | -0.0061 P=0.049 |
MR-Egger | 348 | 0.069 (-0.047- 0.18) P=0.25 | 1.6 | 27 | 0 (0- 27.3) | 308 | 0.93 | -0.0061 P=0.049 |
Weighted median | 348 | 0.076 (-0.083- 0.23) P=0.35 | 1.6 | 27 | 0 (0- 27.3) | NA | NA | -0.0061 P=0.049 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.03 | 0.05 | 0.61 | 0.54 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Uric acid (Shin et al/Long et al) | eGFR (CSSCD) |
rs9725388(A)/1:104894190 | intergenic | (0.19, 0.0072, P = 2.8e-05, N = 7824) | (0.25, -0.097, P = 0.077, N = 859) |
rs2143295(C)/1:11669919 | RP1-69M21.2 | (0.058, -0.31, P = 9.2e-06, N = 1958) | (0.081, 0.019, P = 0.83, N = 859) |
rs6427351(T)/1:157066950* | ETV3L | (0.94, 0.016, P = 2.7e-05, N = 7824) | (0.84, 0.063, P = 0.33, N = 859) |
rs1316637(T)/1:18024794 | ARHGEF10L | (0.58, 0.007, P = 4.3e-05, N = 7824) | (0.81, -0.022, P = 0.72, N = 859) |
rs17352664(A)/1:20559927* | intergenic | (0.11, -0.0095, P = 4.6e-05, N = 7824) | (0.1, -0.012, P = 0.88, N = 859) |
rs510032(T)/1:226724202 | intergenic | (0.17, 0.009, P = 6.8e-06, N = 7824) | (0.062, 0.074, P = 0.46, N = 859) |
rs12137216(A)/1:30632171 | intergenic | (0.89, 0.01, P = 3.7e-05, N = 7824) | (0.95, -0.078, P = 0.49, N = 859) |
rs13375139(T)/1:30691713* | intergenic | (0.17, -0.0075, P = 1.5e-05, N = 7824) | (0.42, 0.024, P = 0.63, N = 859) |
rs1323821(T)/1:58225872* | AL137855.1 | (0.43, 0.0067, P = 3.3e-05, N = 7824) | (0.66, 0.0075, P = 0.88, N = 859) |
rs12027847(A)/1:81766037* | intergenic | (0.11, 0.01, P = 3.3e-05, N = 7824) | (0.028, -0.15, P = 0.3, N = 859) |
rs12138486(T)/1:93865391* | intergenic | (0.79, 0.0074, P = 1.5e-05, N = 7824) | (0.25, -0.15, P = 0.011, N = 859) |
rs7906282(T)/10:19083596* | intergenic | (0.31, 0.008, P = 1.1e-06, N = 7824) | (0.25, 0.00041, P = 0.99, N = 859) |
rs35345503(AC)/10:28955618 | RNU6-1067P | (0.17, -0.28, P = 1.6e-07, N = 1958) | (0.37, -0.013, P = 0.79, N = 859) |
rs2659999(C)/10:68293030 | CTNNA3 | (0.81, -0.0073, P = 2.7e-05, N = 7824) | (0.43, -0.02, P = 0.7, N = 859) |
rs10490946(A)/10:9143876* | intergenic | (0.033, 0.017, P = 2.7e-05, N = 7824) | (0.097, -0.071, P = 0.39, N = 859) |
rs16924665(T)/11:11780607* | RP11-756D7.1 | (0.84, -0.0071, P = 4.2e-05, N = 7824) | (0.91, -0.043, P = 0.6, N = 859) |
rs353632(T)/11:35187348 | CD44 | (0.23, 0.013, P = 4.1e-05, N = 7824) | (0.3, 0.0015, P = 0.98, N = 859) |
rs4378353(T)/11:98429388 | intergenic | (0.49, 0.007, P = 1.3e-05, N = 7824) | (0.29, 0.061, P = 0.25, N = 859) |
rs12817597(T)/12:114132363 | RP11-438N16.1 | (0.021, 0.023, P = 2.5e-05, N = 7824) | (0.013, 0.3, P = 0.17, N = 859) |
rs12579148(T)/12:26803493 | ITPR2 | (0.19, -0.0077, P = 5.9e-06, N = 7824) | (0.031, 0.067, P = 0.63, N = 859) |
rs10844317(T)/12:32874640 | DNM1L | (0.16, -0.0086, P = 1.1e-06, N = 7824) | (0.22, -0.057, P = 0.32, N = 859) |
rs17782050(T)/12:4340106* | intergenic | (0.31, -0.0068, P = 3.3e-05, N = 7824) | (0.12, -0.069, P = 0.36, N = 859) |
rs7487146(A)/12:73794865 | intergenic | (0.88, -0.017, P = 2.5e-05, N = 7824) | (0.95, 0.014, P = 0.9, N = 859) |
rs35800043(C)/12:9029812 | A2ML1 | (0.26, -0.13, P = 9.3e-06, N = 1958) | (0.13, -0.085, P = 0.24, N = 859) |
rs1901044(C)/12:98218675 | intergenic | (0.17, 0.0071, P = 3.6e-05, N = 7824) | (0.47, 0.05, P = 0.29, N = 859) |
rs9557545(A)/13:101578114 | NALCN-AS1 | (0.032, 0.018, P = 7.8e-06, N = 7824) | (0.029, -0.067, P = 0.64, N = 859) |
rs4550321(A)/13:23823888* | SGCG | (0.36, 0.0065, P = 4.5e-05, N = 7824) | (0.23, 0.064, P = 0.26, N = 859) |
rs9510740(C)/13:24017110 | intergenic | (0.23, 0.0073, P = 1.4e-05, N = 7824) | (0.18, 0.04, P = 0.53, N = 859) |
rs9549021(T)/13:40543493* | intergenic | (0.61, -0.013, P = 2.9e-06, N = 7824) | (0.59, 0.0068, P = 0.89, N = 859) |
rs7327319(A)/13:40928617* | RP11-172E9.2 | (0.19, -0.01, P = 1.7e-05, N = 7824) | (0.15, -0.009, P = 0.89, N = 859) |
rs7329766(T)/13:54732465* | intergenic | (0.87, -0.017, P = 2e-05, N = 7824) | (0.8, -0.048, P = 0.42, N = 859) |
rs1540639(T)/13:82344020* | intergenic | (0.15, 0.0072, P = 4.5e-05, N = 7824) | (0.22, 0.026, P = 0.65, N = 859) |
rs10145908(C)/14:63753329* | RHOJ | (0.073, 0.28, P = 9.1e-06, N = 1958) | (0.73, -0.057, P = 0.29, N = 859) |
rs2535896(T)/14:73434531 | ZFYVE1 | (0.25, 0.013, P = 4.3e-05, N = 7824) | (0.51, 0.012, P = 0.8, N = 859) |
rs8011758(A)/14:89626459* | FOXN3 | (0.34, -0.0067, P = 4.8e-05, N = 7824) | (0.39, 0.009, P = 0.86, N = 859) |
rs1286087(T)/14:91437370 | RPS6KA5 | (0.84, 0.0077, P = 8.1e-06, N = 7824) | (0.84, -0.029, P = 0.66, N = 859) |
rs4594244(A)/15:101340649* | RP11-66B24.5 | (0.067, 0.014, P = 3e-05, N = 7824) | (0.17, -0.06, P = 0.34, N = 859) |
rs35907301(G)/15:29139319 | APBA2 | (0.32, -0.13, P = 6.6e-06, N = 1958) | (0.77, 0.075, P = 0.19, N = 859) |
rs1471226(T)/15:29888567 | intergenic | (0.26, -0.0067, P = 4.9e-05, N = 7824) | (0.3, -0.0049, P = 0.93, N = 859) |
rs12396(C)/15:52413316 | GNB5 | (0.54, 0.013, P = 4.5e-05, N = 7824) | (0.15, -0.073, P = 0.29, N = 859) |
rs17184999(T)/15:63818369* | USP3 | (0.85, -0.0076, P = 1.5e-05, N = 7824) | (0.98, 0.043, P = 0.81, N = 859) |
rs374181299(GTCTA)/16:23622399 | PALB2 | (0.14, 0.2, P = 8e-06, N = 1958) | (0.19, 0.077, P = 0.19, N = 859) |
rs12919486(A)/16:53093720* | CHD9 | (0.25, 0.0072, P = 2.4e-05, N = 7824) | (0.17, -0.028, P = 0.66, N = 859) |
rs16953268(A)/16:54286557 | RP11-324D17.1 | (0.069, -0.011, P = 7.7e-06, N = 7824) | (0.14, 0.14, P = 0.038, N = 859) |
rs62065022(C)/16:59029432 | RP11-410D17.2 | (0.29, 0.2, P = 1.2e-06, N = 1958) | (0.082, 0.11, P = 0.21, N = 859) |
rs7203578(A)/16:70758855* | VAC14 | (0.83, 0.0072, P = 3.1e-05, N = 7824) | (0.64, 0.083, P = 0.11, N = 859) |
rs17762472(A)/16:74860912* | intergenic | (0.71, -0.0067, P = 3.8e-05, N = 7824) | (0.91, 0.061, P = 0.48, N = 859) |
rs9923451(A)/16:78952439* | WWOX | (0.011, 0.056, P = 4e-05, N = 7824) | (0.23, -0.062, P = 0.27, N = 859) |
rs8080896(A)/17:14890929* | intergenic | (0.16, 0.0075, P = 1.7e-05, N = 7824) | (0.24, 0.0013, P = 0.98, N = 859) |
rs4793781(A)/17:52962115 | intergenic | (0.2, 0.0072, P = 2e-05, N = 7824) | (0.084, 0.064, P = 0.45, N = 859) |
rs35401841(G)/17:66378322 | ARSG | (0.086, 0.23, P = 5e-06, N = 1958) | (0.064, 0.074, P = 0.46, N = 859) |
rs112095783(C)/2:111785895 | ACOXL | (0.09, -0.29, P = 5.5e-07, N = 1958) | (0.016, 0.076, P = 0.7, N = 859) |
rs35613251(A)/2:130166917 | intergenic | (0.68, -0.13, P = 5.4e-06, N = 1958) | (0.12, 0.032, P = 0.66, N = 859) |
rs10490734(A)/2:138012183* | THSD7B | (0.83, 0.0077, P = 7.9e-06, N = 7824) | (0.75, 0.063, P = 0.25, N = 859) |
rs17642263(T)/2:138637196 | AC020601.1 | (0.47, -0.13, P = 5e-06, N = 1958) | (0.34, 0.037, P = 0.46, N = 859) |
rs16853726(A)/2:168396030* | AC074363.1 | (0.98, 0.047, P = 1.2e-05, N = 7824) | (0.87, 0.19, P = 0.0077, N = 859) |
rs6731691(A)/2:173331754* | ITGA6 | (0.17, -0.008, P = 5.3e-06, N = 7824) | (0.1, -0.035, P = 0.65, N = 859) |
rs10165148(C)/2:208707326 | PLEKHM3 | (0.34, 0.17, P = 4.2e-06, N = 1958) | (0.32, -0.0011, P = 0.98, N = 859) |
rs17010477(A)/2:31145844 | GALNT14 | (0.21, 0.0071, P = 4.7e-05, N = 7824) | (0.13, 0.0076, P = 0.92, N = 859) |
rs3770872(T)/2:36685242 | CRIM1 | (0.02, -0.63, P = 5.3e-07, N = 1958) | (0.047, -0.0052, P = 0.96, N = 859) |
rs7596989(G)/2:5421053* | intergenic | (0.61, -0.17, P = 1.4e-06, N = 1958) | (0.67, -0.043, P = 0.42, N = 859) |
rs2422441(G)/2:65370766 | intergenic | (0.72, -0.17, P = 7.4e-06, N = 1958) | (0.44, 0.038, P = 0.42, N = 859) |
rs2223710(C)/20:11968878 | intergenic | (0.17, 0.0072, P = 3e-05, N = 7824) | (0.45, -0.06, P = 0.21, N = 859) |
rs1569683(A)/20:12068758* | intergenic | (0.16, 0.0073, P = 3.4e-05, N = 7824) | (0.25, 0.074, P = 0.19, N = 859) |
rs742840(G)/20:2545527 | TMC2 | (0.11, -0.29, P = 7.6e-06, N = 1958) | (0.21, 0.013, P = 0.83, N = 859) |
rs6051416(C)/20:2798425 | C20orf141 | (0.023, 0.45, P = 6.5e-06, N = 1958) | (0.28, -0.036, P = 0.49, N = 859) |
rs16993414(T)/20:7308538* | intergenic | (0.98, 0.024, P = 4.6e-05, N = 7824) | (0.96, -0.067, P = 0.59, N = 859) |
rs2838690(A)/21:46222486* | UBE2G2 | (0.15, 0.0073, P = 3.1e-05, N = 7824) | (0.16, 0.097, P = 0.15, N = 859) |
rs235320(A)/21:46277214* | PTTG1IP | (0.82, -0.0079, P = 3.7e-06, N = 7824) | (0.76, 0.05, P = 0.37, N = 859) |
rs11913285(A)/22:19844492* | C22orf29 | (0.81, -0.0072, P = 2.9e-05, N = 7824) | (0.95, 0.11, P = 0.31, N = 859) |
rs2073079(A)/22:44385594 | SAMM50 | (0.82, 0.0072, P = 3.7e-05, N = 7824) | (0.79, -0.053, P = 0.37, N = 859) |
rs13318012(T)/3:106674944 | LINC00882 | (0.84, -0.0078, P = 8.4e-06, N = 7824) | (0.86, -0.0023, P = 0.97, N = 859) |
rs145484282(A)/3:159102816 | IQCJ-SCHIP1 | (0.062, 0.31, P = 2.7e-06, N = 1958) | (0.015, -0.38, P = 0.049, N = 859) |
rs10936697(A)/3:171391416 | PLD1 | (0.21, -0.0075, P = 1e-05, N = 7824) | (0.23, 0.092, P = 0.098, N = 859) |
rs73197782(G)/3:190853411 | intergenic | (0.21, 0.19, P = 9.2e-06, N = 1958) | (0.1, -0.12, P = 0.13, N = 859) |
rs1523125(A)/3:43115161 | intergenic | (0.17, 0.007, P = 5e-05, N = 7824) | (0.041, -0.32, P = 0.0094, N = 859) |
rs11130013(T)/3:43833177* | intergenic | (0.15, -0.0081, P = 5.1e-06, N = 7824) | (0.14, 0.026, P = 0.71, N = 859) |
rs872114(A)/3:68603563* | intergenic | (0.97, -0.021, P = 2.3e-06, N = 7824) | (0.85, -0.078, P = 0.24, N = 859) |
rs2133450(A)/3:7336452* | GRM7 | (0.55, -0.007, P = 1.2e-05, N = 7824) | (0.75, 0.032, P = 0.56, N = 859) |
rs6849273(T)/4:10021595 | SLC2A9 | (0.57, 0.017, P = 1.7e-26, N = 7824) | (0.37, 0.099, P = 0.049, N = 859) |
rs9926(A)/4:10076860* | WDR1 | (0.22, 0.015, P = 1.3e-19, N = 7824) | (0.076, -0.043, P = 0.62, N = 859) |
rs1978274(T)/4:10245087* | intergenic | (0.79, 0.029, P = 1e-66, N = 7824) | (0.78, 0.071, P = 0.21, N = 859) |
rs1558488(A)/4:10327414 | intergenic | (0.29, 0.0069, P = 2.8e-05, N = 7824) | (0.49, 0.0072, P = 0.88, N = 859) |
rs2868941(T)/4:10509699 | CLNK | (0.28, -0.01, P = 1.2e-09, N = 7824) | (0.15, 0.049, P = 0.45, N = 859) |
rs6835088(T)/4:114357856* | intergenic | (0.74, -0.0069, P = 3.5e-05, N = 7824) | (0.91, 0.094, P = 0.28, N = 859) |
rs706344(A)/4:140549479* | intergenic | (0.77, -0.0074, P = 3.7e-05, N = 7824) | (0.79, -0.042, P = 0.47, N = 859) |
rs62333080(G)/4:161389764 | intergenic | (0.26, 0.22, P = 4.3e-06, N = 1958) | (0.11, -0.095, P = 0.22, N = 859) |
rs17055114(A)/4:170658731* | C4orf27 | (0.8, -0.0073, P = 3.4e-05, N = 7824) | (0.69, -0.023, P = 0.67, N = 859) |
rs10866262(A)/4:184383036 | intergenic | (0.65, -0.11, P = 3.9e-06, N = 1958) | (0.73, 0.041, P = 0.44, N = 859) |
rs10517140(A)/4:28341254* | intergenic | (0.14, -0.0073, P = 3e-05, N = 7824) | (0.03, 0.0057, P = 0.97, N = 859) |
rs10024206(A)/4:33782293 | RNU7-131P | (0.94, 0.024, P = 1.8e-05, N = 7824) | (0.73, 0.051, P = 0.35, N = 859) |
rs1158742(C)/4:58139506* | intergenic | (0.75, 0.0072, P = 1.4e-05, N = 7824) | (0.73, 0.014, P = 0.8, N = 859) |
rs13110980(T)/4:63337758 | intergenic | (0.29, -0.21, P = 6.3e-06, N = 1958) | (0.079, -0.19, P = 0.028, N = 859) |
rs6857147(A)/4:71250769 | SMR3B | (0.96, 0.014, P = 3.9e-05, N = 7824) | (0.92, 0.18, P = 0.035, N = 859) |
rs2231142(T)/4:89052323* | ABCG2 | (0.11, 0.012, P = 8.4e-07, N = 7824) | (0.027, -0.18, P = 0.23, N = 859) |
rs1825043(A)/4:9573740* | intergenic | (0.96, 0.019, P = 5.3e-07, N = 7824) | (0.69, -0.046, P = 0.38, N = 859) |
rs7678732(T)/4:9693253* | FAM86MP | (0.037, -0.019, P = 2.1e-06, N = 7824) | (0.042, -0.022, P = 0.85, N = 859) |
rs938554(C)/4:9925692* | SLC2A9 | (0.23, -0.035, P = 5.8e-93, N = 7824) | (0.46, -0.014, P = 0.77, N = 859) |
rs233340(A)/5:13592425 | intergenic | (0.071, -0.013, P = 2.5e-06, N = 7824) | (0.11, 0.18, P = 0.024, N = 859) |
rs13159834(C)/5:141045281* | ARAP3 | (0.84, -0.0072, P = 4.4e-05, N = 7824) | (0.88, 0.0085, P = 0.91, N = 859) |
rs11749230(T)/5:149146535* | PPARGC1B | (0.054, -0.024, P = 3.4e-05, N = 7824) | (0.25, 0.033, P = 0.56, N = 859) |
rs9313506(T)/5:169948896* | KCNIP1 | (0.67, -0.0069, P = 2e-05, N = 7824) | (0.78, -0.011, P = 0.86, N = 859) |
rs11741189(T)/5:179543546* | RASGEF1C | (0.18, -0.0087, P = 3.8e-07, N = 7824) | (0.14, 0.00046, P = 0.99, N = 859) |
rs11750694(A)/5:29023304* | intergenic | (0.16, 0.0074, P = 2.7e-05, N = 7824) | (0.048, -0.014, P = 0.9, N = 859) |
rs2956574(A)/5:36498183* | intergenic | (0.73, 0.0068, P = 4.7e-05, N = 7824) | (0.5, -0.0049, P = 0.92, N = 859) |
rs10058947(T)/5:74227503 | CTD-2503O16.1 | (0.79, 0.22, P = 5.2e-07, N = 1958) | (0.41, -0.018, P = 0.71, N = 859) |
rs6927639(A)/6:108009018 | intergenic | (0.85, -0.0078, P = 9.3e-06, N = 7824) | (0.88, -0.15, P = 0.04, N = 859) |
rs4712645(T)/6:21970303 | CASC15 | (0.97, -0.47, P = 9.9e-06, N = 1958) | (0.62, -0.054, P = 0.28, N = 859) |
rs12614(T)/6:31914179* | CFB | (0.083, -0.26, P = 3.8e-06, N = 1958) | (0.33, 0.08, P = 0.12, N = 859) |
rs1338715(C)/6:87243828 | intergenic | (0.69, -0.14, P = 5e-06, N = 1958) | (0.37, -0.017, P = 0.74, N = 859) |
rs6941452(T)/6:90678323 | BACH2 | (0.28, -0.0071, P = 4.5e-05, N = 7824) | (0.46, -0.0089, P = 0.85, N = 859) |
rs10229191(T)/7:143796891* | OR2A12 | (0.88, -0.022, P = 1.2e-05, N = 7824) | (0.64, 0.0064, P = 0.89, N = 859) |
rs4724354(T)/7:45104623* | CCM2 | (0.78, -0.0075, P = 1.3e-05, N = 7824) | (0.74, 0.0045, P = 0.94, N = 859) |
rs9785033(T)/7:92537054 | AC002454.1 | (0.17, 0.0076, P = 1.6e-05, N = 7824) | (0.5, -0.016, P = 0.73, N = 859) |
rs11786665(A)/8:144550160* | ZC3H3 | (0.068, -0.011, P = 4.4e-05, N = 7824) | (0.019, -0.041, P = 0.81, N = 859) |
rs6982652(T)/8:4977252* | intergenic | (0.73, 0.0071, P = 1.8e-05, N = 7824) | (0.38, -0.077, P = 0.12, N = 859) |
rs10957085(T)/8:60217240 | intergenic | (0.15, 0.17, P = 6.1e-06, N = 1958) | (0.52, -0.033, P = 0.49, N = 859) |
rs6980733(T)/8:84738607 | intergenic | (0.5, -0.007, P = 1.5e-05, N = 7824) | (0.86, -0.031, P = 0.66, N = 859) |
rs11791985(A)/9:102507514 | RP11-554F20.1 | (0.15, -0.0075, P = 2.2e-05, N = 7824) | (0.034, -0.065, P = 0.61, N = 859) |
rs10981877(C)/9:116431022 | RP11-18B16.2 | (0.68, 0.007, P = 2.4e-05, N = 7824) | (0.44, 0.05, P = 0.3, N = 859) |
rs10982829(T)/9:118347052* | intergenic | (0.035, -0.64, P = 2.4e-08, N = 1958) | (0.11, 0.019, P = 0.81, N = 859) |
rs10513281(C)/9:119812714 | ASTN2 | (0.83, -0.0075, P = 1.6e-05, N = 7824) | (0.83, -0.12, P = 0.067, N = 859) |
rs13288611(C)/9:28501477* | LINGO2 | (0.3, -0.0072, P = 1.4e-05, N = 7824) | (0.34, 0.028, P = 0.6, N = 859) |
rs10973300(A)/9:37331037 | ZCCHC7 | (0.16, 0.0079, P = 3.9e-05, N = 7824) | (0.076, 0.16, P = 0.083, N = 859) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 124 | -0.026 (-0.11- 0.06) P=0.55 | 5.8 | 35 | 0 (0- 87.5) | NA | NA | 0.0023 P=0.73 |
MR-Egger | 124 | -0.035 (-0.14- 0.065) P=0.49 | 5.8 | 35 | 0 (0- 87.5) | 128 | 0.34 | 0.0023 P=0.73 |
Weighted median | 124 | -0.034 (-0.16- 0.094) P=0.61 | 5.8 | 35 | 0 (0- 87.5) | NA | NA | 0.0023 P=0.73 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.03 | 0.04 | -0.59 | 0.55 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 64 | -0.0055 (-0.12- 0.11) P=0.92 | 9 | 29 | 0.000742 (0- 98.9) | NA | NA | 0.0025 P=0.82 |
MR-Egger | 64 | -0.015 (-0.15- 0.12) P=0.83 | 9 | 29 | 0.000742 (0- 98.9) | 80 | 0.063 | 0.0025 P=0.82 |
Weighted median | 64 | -0.012 (-0.15- 0.13) P=0.87 | 9 | 29 | 0.000742 (0- 98.9) | NA | NA | 0.0025 P=0.82 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.01 | 0.06 | -0.1 | 0.92 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Deoxycholic acid glycine conjugate (Shin et al/Long et al) | Cholecystectomy (CSSCD) |
rs1776220(T)/1:10874522* | intergenic | (0.55, -0.066, P = 1e-05, N = 1457) | (0.28, -0.23, P = 0.13, N = 1084) |
rs6585252(C)/10:115723678* | intergenic | (0.96, -0.15, P = 8.5e-07, N = 1457) | (0.76, -0.23, P = 0.14, N = 1084) |
rs10741178(T)/10:130903004* | intergenic | (0.21, 0.092, P = 3.6e-05, N = 868) | (0.72, 0.13, P = 0.4, N = 1084) |
rs2647530(A)/11:9105636* | SCUBE2 | (0.88, -0.084, P = 3.9e-05, N = 1457) | (0.84, -0.16, P = 0.38, N = 1084) |
rs963167(A)/11:9111558* | SCUBE2 | (0.12, 0.093, P = 1.6e-05, N = 1457) | (0.16, 0.0033, P = 0.99, N = 1084) |
rs833718(A)/12:103071086* | intergenic | (0.47, -0.056, P = 2.6e-05, N = 1457) | (0.37, -0.065, P = 0.63, N = 1084) |
rs9669375(T)/12:15188765* | intergenic | (0.34, -0.089, P = 2.3e-05, N = 868) | (0.31, 0.24, P = 0.11, N = 1084) |
rs806784(T)/12:32438189* | BICD1 | (0.72, -0.095, P = 1.5e-06, N = 868) | (0.45, -0.055, P = 0.7, N = 1084) |
rs10506675(T)/12:75481828* | KCNC2 | (0.096, 0.088, P = 4e-05, N = 1457) | (0.12, -0.23, P = 0.27, N = 1084) |
rs9301881(T)/13:94105286* | GPC6 | (0.57, 0.059, P = 5.8e-06, N = 1457) | (0.74, 0.055, P = 0.71, N = 1084) |
rs8016700(A)/14:100695157* | RP11-638I2.4 | (0.045, 0.14, P = 4.7e-05, N = 1457) | (0.1, -0.026, P = 0.91, N = 1084) |
rs17124276(T)/14:88685076* | KCNK10 | (0.22, 0.07, P = 1.9e-05, N = 1457) | (0.14, 0.26, P = 0.19, N = 1084) |
rs3825678(T)/14:88693676* | KCNK10 | (0.26, 0.061, P = 4.9e-05, N = 1457) | (0.37, 0.22, P = 0.1, N = 1084) |
rs11642055(A)/16:56644265* | MT2A | (0.15, -0.093, P = 1.9e-05, N = 1457) | (0.026, -0.58, P = 0.18, N = 1084) |
rs16966727(A)/16:63943790* | intergenic | (0.033, 0.22, P = 1.8e-05, N = 868) | (0.081, 0.0045, P = 0.99, N = 1084) |
rs7190849(A)/16:79472854* | intergenic | (0.92, -0.1, P = 4e-05, N = 1457) | (0.84, 0.15, P = 0.42, N = 1084) |
rs4432315(T)/18:31293792* | ASXL3 | (0.5, -0.054, P = 3.1e-05, N = 1457) | (0.58, -0.067, P = 0.63, N = 1084) |
rs11660001(A)/18:55220229* | FECH | (0.21, 0.077, P = 2.8e-05, N = 1457) | (0.12, 0.085, P = 0.69, N = 1084) |
rs4808544(T)/19:17083711* | CPAMD8 | (0.22, 0.069, P = 2.2e-05, N = 1457) | (0.38, -0.036, P = 0.8, N = 1084) |
rs7257166(T)/19:17788804* | UNC13A | (0.83, -0.075, P = 2.2e-05, N = 1457) | (0.44, 0.27, P = 0.048, N = 1084) |
rs737094(A)/2:100089078* | REV1 | (0.28, -0.062, P = 1.7e-05, N = 1457) | (0.095, -0.06, P = 0.8, N = 1084) |
rs7561272(T)/2:121856858* | intergenic | (0.98, -0.27, P = 3.1e-05, N = 868) | (0.78, -0.095, P = 0.54, N = 1084) |
rs10490230(A)/2:50538327* | NRXN1 | (0.13, 0.084, P = 3.3e-05, N = 1457) | (0.29, -0.07, P = 0.64, N = 1084) |
rs12477733(T)/2:72347041* | intergenic | (0.052, 0.13, P = 8.2e-06, N = 1457) | (0.21, 0.017, P = 0.91, N = 1084) |
rs2420201(A)/2:72356370* | CYP26B1 | (0.049, 0.15, P = 1.9e-06, N = 1457) | (0.14, -0.25, P = 0.18, N = 1084) |
rs6081530(A)/20:19179535* | intergenic | (0.27, 0.086, P = 2.3e-05, N = 868) | (0.028, -0.62, P = 0.11, N = 1084) |
rs1741315(A)/20:4155948* | SMOX | (0.42, -0.059, P = 2e-05, N = 1457) | (0.15, 0.14, P = 0.45, N = 1084) |
rs133588(A)/22:48666450* | MIR3201 | (0.84, -0.077, P = 2e-05, N = 1457) | (0.51, -0.17, P = 0.2, N = 1084) |
rs2360865(A)/3:143407129* | SLC9A9 | (0.35, -0.061, P = 1.1e-05, N = 1457) | (0.12, -0.3, P = 0.13, N = 1084) |
rs6797793(T)/3:147087164* | RP11-649A16.1 | (0.83, -0.1, P = 2.1e-05, N = 868) | (0.5, 0.038, P = 0.78, N = 1084) |
rs7609993(A)/3:5858488* | intergenic | (0.83, 0.076, P = 1.8e-05, N = 1457) | (0.83, 0.033, P = 0.86, N = 1084) |
rs6445500(T)/3:65712905* | MAGI1 | (0.3, 0.059, P = 3.9e-05, N = 1457) | (0.5, 0.12, P = 0.38, N = 1084) |
rs329044(A)/3:7748565* | GRM7 | (0.97, -0.18, P = 4.5e-05, N = 1457) | (0.87, -0.23, P = 0.24, N = 1084) |
rs230526(A)/4:103458825* | NFKB1 | (0.4, 0.057, P = 2.3e-05, N = 1457) | (0.42, -0.044, P = 0.74, N = 1084) |
rs13124866(A)/4:137834834* | RP11-138I17.1 | (0.41, -0.066, P = 1.3e-05, N = 1457) | (0.3, 0.14, P = 0.34, N = 1084) |
rs9312547(T)/4:174620399* | intergenic | (0.55, -0.06, P = 2.5e-05, N = 1457) | (0.71, 0.35, P = 0.022, N = 1084) |
rs17746543(A)/4:55227440* | intergenic | (0.51, -0.088, P = 3.7e-06, N = 868) | (0.095, 0.25, P = 0.3, N = 1084) |
rs420460(T)/5:150548930* | intergenic | (0.37, -0.061, P = 2.3e-05, N = 1457) | (0.44, 0.076, P = 0.58, N = 1084) |
rs2591578(A)/5:165407709* | intergenic | (0.3, 0.06, P = 2.5e-05, N = 1457) | (0.18, -0.17, P = 0.34, N = 1084) |
rs6881524(T)/5:174168668* | intergenic | (0.29, -0.12, P = 4.8e-05, N = 868) | (0.47, 0.2, P = 0.13, N = 1084) |
rs11949031(A)/5:2370336* | intergenic | (0.16, 0.075, P = 3.5e-05, N = 1457) | (0.21, -0.0025, P = 0.99, N = 1084) |
rs2524222(T)/6:30511170* | GNL1 | (0.23, -0.07, P = 2.1e-05, N = 1457) | (0.058, 0.078, P = 0.79, N = 1084) |
rs7746971(T)/6:52742295* | RP11-392A23.5 | (0.96, -0.18, P = 4e-05, N = 868) | (0.74, 0.26, P = 0.093, N = 1084) |
rs4338010(T)/7:152624870* | intergenic | (0.079, -0.11, P = 5.7e-06, N = 1457) | (0.32, 0.0034, P = 0.98, N = 1084) |
rs3905501(T)/7:76542080* | UPK3B | (0.83, 0.11, P = 1.3e-05, N = 868) | (0.89, -0.42, P = 0.066, N = 1084) |
rs10253564(T)/7:85262972* | AC092013.1 | (0.27, -0.095, P = 2.6e-05, N = 868) | (0.83, 0.46, P = 0.013, N = 1084) |
rs818555(A)/8:49999211* | intergenic | (0.5, -0.056, P = 3.3e-05, N = 1457) | (0.32, 0.019, P = 0.9, N = 1084) |
rs4734519(T)/8:92358729* | SLC26A7 | (0.67, 0.061, P = 1.6e-05, N = 1457) | (0.52, -0.02, P = 0.89, N = 1084) |
rs12349595(T)/9:121310484* | intergenic | (0.86, 0.081, P = 3.1e-05, N = 1457) | (0.8, -0.097, P = 0.57, N = 1084) |
rs7856830(T)/9:136457146* | intergenic | (0.15, -0.089, P = 2.3e-06, N = 1457) | (0.5, 0.16, P = 0.25, N = 1084) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 50 | 0.76 (0.47- 1.2) P=0.28 | 2.6 | 11 | 11.1 (0- 52.3) | NA | NA | -0.018 P=0.77 |
MR-Egger | 50 | 0.89 (0.28- 2.9) P=0.85 | 2.6 | 11 | 11.1 (0- 52.3) | 57 | 0.18 | -0.018 P=0.77 |
Weighted median | 50 | 1 (0.48- 2.2) P=0.95 | 2.6 | 11 | 11.1 (0- 52.3) | NA | NA | -0.018 P=0.77 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.27 | 0.25 | -1.08 | 0.29 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Results from Univariable Mendelian Randomization of Deoxycholic acid glycine conjugate & Cholecystectomy - model2
Results from Univariable MRPRESSO of Deoxycholic acid glycine conjugate & Cholecystectomy - model2
Association of Variant with… (EAF, Beta, P Value, N)
|
|||
---|---|---|---|
SNP (hg19) | Gene Region | Taurodeoxycholic acid (Shin et al/Long et al) | Cholecystectomy (CSSCD) |
rs1942235(C)/1:116083074* | intergenic | (0.9, 0.32, P = 3.7e-06, N = 1943) | (0.55, -0.034, P = 0.8, N = 1084) |
rs1737349(T)/1:15124318 | KAZN | (0.56, 0.054, P = 4.6e-05, N = 963) | (0.59, 0.34, P = 0.013, N = 1084) |
rs2805468(G)/1:237721111* | RYR2 | (0.7, -0.13, P = 7.7e-06, N = 1943) | (0.43, -0.16, P = 0.25, N = 1084) |
rs4294448(T)/1:248847828* | OR14I1 | (0.88, 0.081, P = 4.2e-05, N = 963) | (0.68, -0.093, P = 0.52, N = 1084) |
rs16829526(T)/1:42907711 | ZMYND12 | (0.14, -0.062, P = 2.6e-05, N = 1543) | (0.045, -0.25, P = 0.44, N = 1084) |
rs691135(A)/1:87266383* | intergenic | (0.037, -0.11, P = 1.9e-05, N = 1543) | (0.089, -0.16, P = 0.48, N = 1084) |
rs1220398(A)/1:9994339* | LZIC | (0.13, -0.062, P = 4.2e-05, N = 1543) | (0.51, 0.11, P = 0.4, N = 1084) |
rs10741178(T)/10:130903004* | intergenic | (0.21, 0.065, P = 4.3e-05, N = 963) | (0.72, 0.13, P = 0.4, N = 1084) |
rs12781751(T)/10:31872826* | intergenic | (0.54, 0.13, P = 5.7e-06, N = 1943) | (0.48, 0.099, P = 0.46, N = 1084) |
rs3004260(A)/10:43487986* | intergenic | (0.4, -0.046, P = 1.4e-05, N = 1543) | (0.32, 0.23, P = 0.12, N = 1084) |
rs7067796(A)/10:86843226 | intergenic | (0.78, 0.05, P = 2.7e-05, N = 1543) | (0.52, -0.095, P = 0.48, N = 1084) |
rs17403795(A)/11:10581217* | LYVE1 | (0.12, 0.073, P = 5.6e-06, N = 1543) | (0.022, -0.43, P = 0.37, N = 1084) |
rs508479(A)/11:119775811* | intergenic | (0.19, 0.055, P = 2.1e-05, N = 1543) | (0.46, 0.13, P = 0.37, N = 1084) |
rs11234448(A)/11:85568363 | CCDC83 | (0.046, -0.51, P = 3e-07, N = 1943) | (0.058, -0.31, P = 0.28, N = 1084) |
rs10898422(T)/11:85582459 | CCDC83 | (0.047, -0.49, P = 4.9e-07, N = 1943) | (0.11, 0.36, P = 0.1, N = 1084) |
rs11234461(T)/11:85596772 | CCDC83 | (0.047, -0.5, P = 1.3e-07, N = 1943) | (0.087, -0.2, P = 0.42, N = 1084) |
rs2647873(A)/12:103081192* | intergenic | (0.49, 0.043, P = 2.6e-05, N = 1543) | (0.16, 0.23, P = 0.22, N = 1084) |
rs7961079(A)/12:109123064* | CORO1C | (0.62, 0.053, P = 1.5e-06, N = 1543) | (0.92, 0.22, P = 0.38, N = 1084) |
rs11170624(T)/12:54030238 | RP11-972K6.1 | (0.16, 0.057, P = 4.4e-05, N = 1543) | (0.51, -0.42, P = 0.0011, N = 1084) |
rs7299605(G)/12:77285134 | intergenic | (0.15, -0.27, P = 3.2e-06, N = 1943) | (0.15, 0.31, P = 0.11, N = 1084) |
rs17022499(A)/12:94901589* | intergenic | (0.23, 0.054, P = 9.7e-06, N = 1543) | (0.082, 0.043, P = 0.86, N = 1084) |
rs12428322(T)/13:83109538* | intergenic | (0.14, 0.063, P = 3.8e-05, N = 1543) | (0.13, -0.012, P = 0.95, N = 1084) |
rs7984555(A)/13:90887749* | KRT18P27 | (0.16, -0.061, P = 2e-05, N = 1543) | (0.089, -0.23, P = 0.32, N = 1084) |
rs10146068(A)/14:51820214 | RP11-255G12.2 | (0.18, -0.23, P = 2.8e-06, N = 1943) | (0.32, -0.2, P = 0.17, N = 1084) |
rs7140891(T)/14:97171176 | intergenic | (0.98, -0.19, P = 2.2e-05, N = 963) | (0.88, -0.031, P = 0.88, N = 1084) |
rs3803481(A)/15:61278958* | RORA | (0.81, -0.068, P = 3.4e-05, N = 963) | (0.71, -0.073, P = 0.62, N = 1084) |
rs1532761(G)/15:97323639 | SPATA8 | (0.45, -0.15, P = 3.7e-06, N = 1943) | (0.51, 0.15, P = 0.25, N = 1084) |
rs1362633(A)/16:50062572* | CNEP1R1 | (0.73, -0.046, P = 3.3e-05, N = 1543) | (0.42, 0.043, P = 0.76, N = 1084) |
rs7184864(A)/16:50188783 | PAPD5 | (0.8, -0.058, P = 9.1e-06, N = 1543) | (0.62, -0.03, P = 0.82, N = 1084) |
rs732329(A)/16:83392422* | CDH13 | (0.12, 0.066, P = 1.9e-05, N = 1543) | (0.25, 0.027, P = 0.86, N = 1084) |
rs12452524(T)/17:36581020 | ARHGAP23 | (0.81, 0.068, P = 3.8e-05, N = 1543) | (0.56, -0.14, P = 0.3, N = 1084) |
rs75587136(A)/18:65460203 | RP11-638L3.1 | (0.11, -0.23, P = 3.8e-06, N = 1943) | (0.03, -0.93, P = 0.018, N = 1084) |
rs12968034(T)/18:7023548 | LAMA1 | (0.031, -0.13, P = 4.4e-05, N = 1543) | (0.049, -0.15, P = 0.63, N = 1084) |
rs5022665(A)/19:15783162 | CYP4F12 | (0.89, 0.074, P = 3.3e-05, N = 1543) | (0.89, 0.034, P = 0.87, N = 1084) |
rs7251585(T)/19:17800702 | UNC13A | (0.058, 0.092, P = 3.3e-05, N = 1543) | (0.041, -0.41, P = 0.25, N = 1084) |
rs10490431(T)/2:17108634* | intergenic | (0.052, -0.093, P = 3e-05, N = 1543) | (0.031, -0.49, P = 0.21, N = 1084) |
rs1153699(T)/2:175922786* | intergenic | (0.24, 0.06, P = 3.9e-06, N = 1543) | (0.4, -0.088, P = 0.53, N = 1084) |
rs371887376(TA)/2:183851142 | NCKAP1 | (0.02, -0.64, P = 6e-06, N = 1943) | (0.13, -0.13, P = 0.51, N = 1084) |
rs1898906(A)/2:188892386* | LINC01090 | (0.03, 0.14, P = 4.1e-06, N = 1543) | (0.1, -0.15, P = 0.5, N = 1084) |
rs1377635(T)/2:5261555* | intergenic | (0.61, 0.14, P = 9.7e-06, N = 1943) | (0.52, 0.021, P = 0.87, N = 1084) |
rs17588324(T)/2:68310748 | C1D | (0.87, -0.063, P = 4.8e-05, N = 1543) | (0.95, 0.32, P = 0.33, N = 1084) |
rs11906184(C)/20:58785070* | RP5-1043L13.1 | (0.022, -0.55, P = 3.5e-06, N = 1943) | (0.081, -0.27, P = 0.29, N = 1084) |
rs1297246(T)/21:16726906* | intergenic | (0.43, -0.045, P = 2.7e-05, N = 1543) | (0.14, 0.15, P = 0.45, N = 1084) |
rs2032297(C)/21:22455320* | NCAM2 | (0.79, 0.057, P = 3.9e-06, N = 1543) | (0.57, -0.019, P = 0.89, N = 1084) |
rs2776341(A)/21:42490274* | intergenic | (0.48, -0.045, P = 2.2e-05, N = 1543) | (0.6, -0.1, P = 0.46, N = 1084) |
rs8137495(A)/22:23972409 | C22orf43 | (0.74, 0.06, P = 7.8e-06, N = 1543) | (0.74, 0.0029, P = 0.98, N = 1084) |
rs28453905(C)/3:135665019 | intergenic | (0.31, 0.19, P = 8.7e-06, N = 1943) | (0.49, 0.094, P = 0.49, N = 1084) |
rs1799598(A)/3:172409798 | NCEH1 | (0.79, 0.068, P = 1.3e-05, N = 963) | (0.75, 0.022, P = 0.89, N = 1084) |
rs112391358(CA)/3:184673755 | VPS8 | (0.1, -0.3, P = 4.6e-07, N = 1943) | (0.94, 0.2, P = 0.48, N = 1084) |
rs11131020(A)/3:65411716* | MAGI1 | (0.53, 0.048, P = 4.6e-05, N = 1543) | (0.92, 0.055, P = 0.84, N = 1084) |
rs11712688(A)/3:71379546* | FOXP1 | (0.47, 0.043, P = 1.4e-05, N = 1543) | (0.13, -0.081, P = 0.69, N = 1084) |
rs1445516(A)/4:137797233 | RP11-138I17.1 | (0.29, 0.047, P = 3.3e-05, N = 1543) | (0.15, -0.1, P = 0.57, N = 1084) |
rs4076797(T)/4:159225610 | intergenic | (0.051, 0.098, P = 2e-05, N = 1543) | (0.31, 0.17, P = 0.23, N = 1084) |
rs4632709(T)/4:159246141 | RXFP1 | (0.95, -0.15, P = 4e-07, N = 963) | (0.68, -0.19, P = 0.17, N = 1084) |
rs4692552(C)/4:169764631* | PALLD | (0.28, 0.2, P = 6.6e-06, N = 1943) | (0.096, -0.089, P = 0.7, N = 1084) |
rs929617(A)/4:18240774* | intergenic | (0.17, 0.062, P = 1.6e-05, N = 1543) | (0.02, 0.42, P = 0.41, N = 1084) |
rs11728685(A)/4:18465884* | intergenic | (0.35, -0.056, P = 3e-05, N = 963) | (0.21, 0.032, P = 0.85, N = 1084) |
rs6553268(T)/4:189956524* | intergenic | (0.074, 0.098, P = 4.8e-05, N = 963) | (0.25, -0.17, P = 0.27, N = 1084) |
rs2291530(A)/4:20756007 | KCNIP4 | (0.02, 0.16, P = 2.7e-05, N = 1543) | (0.042, 0.4, P = 0.22, N = 1084) |
rs10464005(C)/5:103769981 | RP11-6N13.1 | (0.3, -0.23, P = 2e-06, N = 1943) | (0.23, 0.23, P = 0.16, N = 1084) |
rs1820806(A)/5:108720463 | PJA2 | (0.94, 0.087, P = 4.4e-05, N = 1543) | (0.61, 0.015, P = 0.92, N = 1084) |
rs289027(A)/5:114109101* | intergenic | (0.34, 0.045, P = 3.7e-05, N = 1543) | (0.14, -0.07, P = 0.73, N = 1084) |
rs11241933(A)/5:126944341 | intergenic | (0.27, -0.061, P = 1.1e-06, N = 1543) | (0.14, -0.054, P = 0.78, N = 1084) |
rs3733672(A)/5:149439494* | CSF1R | (0.11, 0.068, P = 2.6e-05, N = 1543) | (0.1, -0.39, P = 0.092, N = 1084) |
rs905177(T)/5:18833784 | intergenic | (0.6, -0.068, P = 4.8e-05, N = 963) | (0.79, 0.17, P = 0.29, N = 1084) |
rs11949031(A)/5:2370336* | intergenic | (0.16, 0.066, P = 1.5e-06, N = 1543) | (0.21, -0.0025, P = 0.99, N = 1084) |
rs12654530(T)/5:77490596* | AP3B1 | (0.052, 0.075, P = 4e-05, N = 1543) | (0.038, -0.16, P = 0.64, N = 1084) |
rs7718530(A)/5:92485295 | intergenic | (0.32, -0.14, P = 8e-06, N = 1943) | (0.53, 0.2, P = 0.15, N = 1084) |
rs4896370(A)/6:138818837 | NHSL1 | (0.35, 0.056, P = 4.2e-06, N = 1543) | (0.39, -0.014, P = 0.92, N = 1084) |
rs7763112(A)/6:159699814 | intergenic | (0.82, 0.056, P = 2.6e-05, N = 1543) | (0.53, -0.15, P = 0.25, N = 1084) |
rs9347691(A)/6:163249645* | PACRG | (0.95, 0.094, P = 2.3e-05, N = 1543) | (0.94, 0.016, P = 0.96, N = 1084) |
rs10246722(A)/7:18965590 | HDAC9 | (0.77, 0.049, P = 3.1e-05, N = 1543) | (0.89, -0.28, P = 0.18, N = 1084) |
rs17150615(T)/7:29219062 | CPVL | (0.084, -0.079, P = 1.5e-05, N = 1543) | (0.015, 0.24, P = 0.68, N = 1084) |
rs4719970(C)/7:29423773* | CHN2 | (0.45, -0.18, P = 5.9e-06, N = 1943) | (0.5, -0.033, P = 0.81, N = 1084) |
rs17374391(T)/7:3507092* | SDK1 | (0.9, -0.067, P = 4.7e-05, N = 1543) | (0.78, -0.051, P = 0.76, N = 1084) |
rs6959191(A)/7:52165673* | intergenic | (0.016, 0.23, P = 1.9e-05, N = 963) | (0.1, -0.25, P = 0.23, N = 1084) |
rs2374374(A)/7:90579226 | CDK14 | (0.8, 0.16, P = 4e-07, N = 1943) | (0.88, 0.083, P = 0.69, N = 1084) |
rs1207732(T)/7:96649668 | DLX5 | (0.76, 0.05, P = 3.5e-05, N = 1543) | (0.82, -0.069, P = 0.7, N = 1084) |
rs7845099(T)/8:39316048 | ADAM3A | (0.89, 0.086, P = 3.2e-05, N = 1543) | (0.67, 0.044, P = 0.77, N = 1084) |
rs75543373(T)/8:70043220 | GS1-44D20.1 | (0.086, -0.28, P = 6.2e-06, N = 1943) | (0.027, 0.67, P = 0.13, N = 1084) |
rs10820542(A)/9:106517270 | intergenic | (0.15, -0.15, P = 4.2e-06, N = 1943) | (0.18, 0.077, P = 0.66, N = 1084) |
rs925837(T)/9:108868577 | intergenic | (0.59, -0.044, P = 2.9e-05, N = 1543) | (0.18, -0.03, P = 0.87, N = 1084) |
rs1780158(C)/9:15133616* | RP11-54D18.3 | (0.089, -0.073, P = 3.9e-05, N = 1543) | (0.31, -0.044, P = 0.76, N = 1084) |
rs144820845(CGT)/9:16855132 | BNC2 | (0.047, -0.42, P = 5.9e-06, N = 1943) | (0.023, -0.42, P = 0.33, N = 1084) |
rs3847229(A)/9:1801822 | intergenic | (0.74, -0.052, P = 2e-05, N = 1543) | (0.25, 0.028, P = 0.86, N = 1084) |
rs993233(G)/9:25890226 | intergenic | (0.64, -0.1, P = 9e-06, N = 1943) | (0.39, 0.28, P = 0.039, N = 1084) |
rs10975331(T)/9:5877594* | KIAA2026 | (0.036, 0.12, P = 9.6e-06, N = 1543) | (0.12, 0.44, P = 0.029, N = 1084) |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
IVW(re) | 87 | 1 (0.79- 1.3) P=0.95 | 8.8 | 41 | 4.13 (0- 43.2) | NA | NA | -0.033 P=0.26 |
MR-Egger | 87 | 1.2 (0.82- 1.7) P=0.38 | 8.8 | 41 | 4.13 (0- 43.2) | 88 | 0.39 | -0.033 P=0.26 |
Weighted median | 87 | 1.2 (0.82- 1.8) P=0.33 | 8.8 | 41 | 4.13 (0- 43.2) | NA | NA | -0.033 P=0.26 |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | 0.01 | 0.13 | 0.06 | 0.95 |
beta.exposure | Outlier-corrected | NA | NA | NA | NA |
Heterogeneity Statistics
|
||||||||
---|---|---|---|---|---|---|---|---|
Method | nSNP | Beta (95% CI) Pval | F | Var_ex | I2 | Q | Q_pval | Egger intercept (Beta Pval) |
taurodeoxycholate | cholecystectomy | IVW(re) | 0.95 (0.67- 1.3) P=0.77 | 20.1 (0- 73.6) | 45 | 12 | 28 | NA |
taurodeoxycholate | cholecystectomy | MR-Egger | 1.2 (0.75- 2.1) P=0.4 | 20.1 (0- 73.6) | 45 | 12 | 28 | 58 |
taurodeoxycholate | cholecystectomy | Weighted median | 1.2 (0.76- 2) P=0.39 | 20.1 (0- 73.6) | 45 | 12 | 28 | NA |
Exposure | MR.Analysis | Causal.Estimate | Sd | T.stat | P.value |
---|---|---|---|---|---|
beta.exposure | Raw | -0.05 | 0.18 | -0.30 | 0.77 |
beta.exposure | Outlier-corrected | -0.02 | 0.16 | -0.12 | 0.90 |